Wall clock time and date at job start Mon Mar 30 2020 02:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47252 * 2 1 4 4 N 1.46895 * 109.47228 * 119.99958 * 2 1 3 5 5 C 1.47447 * 110.99921 * 59.15592 * 4 2 1 6 6 C 1.54326 * 107.23119 * 123.25887 * 5 4 2 7 7 C 1.55144 * 103.01770 * 22.28560 * 6 5 4 8 8 C 1.47846 * 111.00328 * 180.02562 * 4 2 1 9 9 H 1.08999 * 110.37000 * 332.57413 * 8 4 2 10 10 C 1.53003 * 110.37401 * 94.80394 * 8 4 2 11 11 O 1.42900 * 109.46786 * 65.00647 * 10 8 4 12 12 C 1.34924 * 116.99778 * 179.97438 * 11 10 8 13 13 H 1.08005 * 119.99986 * 359.97438 * 12 11 10 14 14 C 1.38633 * 120.00265 * 179.97438 * 12 11 10 15 15 N 1.31588 * 119.99667 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00461 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47485 * 179.97438 * 16 14 12 18 18 H 1.48505 * 109.46497 * 299.99635 * 16 14 12 19 19 H 1.48500 * 109.47264 * 59.99454 * 16 14 12 20 20 H 1.08993 * 109.46868 * 300.00146 * 1 2 3 21 21 H 1.08998 * 109.47020 * 60.00227 * 1 2 3 22 22 H 1.09000 * 109.47218 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47427 * 239.99989 * 2 1 3 24 24 H 1.08990 * 109.47033 * 180.02562 * 3 2 1 25 25 H 1.09005 * 109.46910 * 300.00240 * 3 2 1 26 26 H 1.09002 * 109.46914 * 59.99675 * 3 2 1 27 27 H 1.09004 * 109.88840 * 242.66306 * 5 4 2 28 28 H 1.08997 * 109.88732 * 3.69215 * 5 4 2 29 29 H 1.09002 * 110.70038 * 140.66503 * 6 5 4 30 30 H 1.08997 * 110.70198 * 263.72360 * 6 5 4 31 31 H 1.09004 * 110.98532 * 206.25271 * 7 6 5 32 32 H 1.08993 * 110.99341 * 82.44049 * 7 6 5 33 33 H 1.09002 * 109.47255 * 305.00123 * 10 8 4 34 34 H 1.08999 * 109.46752 * 184.99888 * 10 8 4 35 35 H 0.97001 * 119.99805 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.5304 -2.0827 1.2436 6 6 2.7681 -3.0002 1.3336 7 6 3.8598 -2.0591 1.9075 8 6 3.4976 -0.7117 1.2339 9 1 3.9013 -0.6707 0.2223 10 6 4.0263 0.4590 2.0651 11 8 3.6244 0.2962 3.4268 12 6 4.0127 1.2502 4.2983 13 1 4.6009 2.0884 3.9547 14 6 3.6568 1.1546 5.6347 15 7 2.9398 0.1336 6.0532 16 14 4.1938 2.4757 6.8412 17 1 3.6881 2.1429 8.1972 18 1 5.6768 2.5471 6.8692 19 1 3.6429 3.7876 6.4163 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 0.8984 -2.2256 2.1201 28 1 0.9653 -2.3059 0.3387 29 1 2.5818 -3.8330 2.0117 30 1 3.0500 -3.3648 0.3458 31 1 4.8553 -2.3892 1.6103 32 1 3.7819 -1.9865 2.9922 33 1 3.6213 1.3932 1.6759 34 1 5.1145 0.4830 2.0079 35 1 2.6600 -0.5519 5.4264 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260353199.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:22 Heat of formation + Delta-G solvation = -61.210782 kcal Electronic energy + Delta-G solvation = -15226.429103 eV Core-core repulsion = 12837.743217 eV Total energy + Delta-G solvation = -2388.685886 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.60712 -37.98881 -35.33656 -33.90115 -31.47900 -30.11234 -27.86780 -26.55271 -25.60013 -22.52345 -21.53454 -20.70486 -20.00351 -17.47507 -16.99790 -16.37279 -16.00392 -15.74113 -15.38729 -15.10842 -14.45200 -14.18573 -14.07629 -13.28828 -13.15842 -12.91911 -12.70643 -12.33309 -12.25397 -12.04513 -11.98427 -11.91129 -11.87403 -11.76629 -11.54879 -11.20743 -11.03409 -10.04571 -9.09663 -8.58483 -5.84574 1.51497 1.64170 1.81871 2.55240 2.93236 3.25508 3.57680 3.67468 3.92377 3.97988 4.10809 4.13872 4.31891 4.36772 4.44453 4.57070 4.67315 4.68707 4.78867 4.81480 4.88946 4.93000 4.96308 4.98515 5.05268 5.15147 5.30754 5.37987 5.41151 5.47238 6.15166 6.36262 6.55451 7.27939 8.06014 8.91238 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.034150 B = 0.009060 C = 0.008273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.707670 B = 3089.884557 C = 3383.800033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.071 3.929 3 C -0.144 4.144 4 N -0.540 5.540 5 C 0.046 3.954 6 C -0.129 4.129 7 C -0.122 4.122 8 C 0.086 3.914 9 H 0.081 0.919 10 C 0.082 3.918 11 O -0.329 6.329 12 C -0.455 4.455 13 H 0.050 0.950 14 C -0.067 4.067 15 N -0.942 5.942 16 Si 1.139 2.861 17 H -0.279 1.279 18 H -0.267 1.267 19 H -0.270 1.270 20 H 0.040 0.960 21 H 0.080 0.920 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.082 0.918 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.033 0.967 34 H 0.017 0.983 35 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.371 -2.350 -14.249 14.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.037 4.037 3 C -0.202 4.202 4 N -0.266 5.266 5 C -0.081 4.081 6 C -0.167 4.167 7 C -0.161 4.161 8 C -0.022 4.022 9 H 0.098 0.902 10 C 0.005 3.995 11 O -0.245 6.245 12 C -0.534 4.534 13 H 0.067 0.933 14 C -0.259 4.259 15 N -0.583 5.583 16 Si 0.958 3.042 17 H -0.204 1.204 18 H -0.192 1.192 19 H -0.195 1.195 20 H 0.059 0.941 21 H 0.099 0.901 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.035 0.965 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.748 -1.758 -12.230 12.479 hybrid contribution 0.521 -0.654 -2.159 2.315 sum -1.227 -2.412 -14.389 14.641 Atomic orbital electron populations 1.21858 0.93451 1.02310 1.02003 1.21878 0.96518 0.94918 0.90415 1.21980 1.00716 0.95858 1.01615 1.63359 1.07784 1.15971 1.39494 1.22763 0.97331 0.86750 1.01259 1.22738 0.94370 0.97750 1.01892 1.22577 0.99405 0.94013 1.00056 1.22505 0.88188 0.94659 0.96867 0.90168 1.22440 0.95244 0.97429 0.84413 1.85358 1.76357 1.47173 1.15657 1.22090 1.35244 1.03744 0.92330 0.93259 1.27836 0.96910 1.03842 0.97321 1.70698 1.37574 1.12253 1.37770 0.82618 0.76582 0.71651 0.73334 1.20387 1.19221 1.19505 0.94122 0.90076 0.91872 0.92802 0.93094 0.89926 0.94599 0.93083 0.90313 0.90562 0.89111 0.89950 0.93722 0.94892 0.96501 0.93718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.05 71.98 0.65 -2.85 16 2 C 0.07 2.03 2.27 44.92 0.10 2.13 16 3 C -0.14 -4.27 7.93 71.98 0.57 -3.70 16 4 N -0.54 -19.59 4.67 -835.53 -3.90 -23.49 16 5 C 0.05 1.44 6.15 86.65 0.53 1.97 16 6 C -0.13 -3.66 6.94 31.78 0.22 -3.44 16 7 C -0.12 -4.44 6.43 31.99 0.21 -4.24 16 8 C 0.09 3.18 2.24 45.40 0.10 3.29 16 9 H 0.08 2.48 7.60 -2.39 -0.02 2.47 16 10 C 0.08 3.83 5.54 71.98 0.40 4.23 16 11 O -0.33 -19.69 7.92 -81.93 -0.65 -20.34 16 12 C -0.46 -28.44 9.89 67.91 0.67 -27.77 16 13 H 0.05 2.96 7.77 -2.91 -0.02 2.93 16 14 C -0.07 -4.16 5.49 84.82 0.47 -3.70 16 15 N -0.94 -63.34 13.70 21.61 0.30 -63.04 16 16 Si 1.14 53.05 29.92 68.60 2.05 55.10 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 21 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.06 1.45 6.45 -2.39 -0.02 1.43 16 23 H 0.05 1.32 8.09 -2.39 -0.02 1.30 16 24 H 0.05 1.55 5.67 -2.39 -0.01 1.54 16 25 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.03 1.28 7.98 -2.39 -0.02 1.26 16 27 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.08 1.94 6.28 -2.39 -0.02 1.92 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 32 H 0.04 2.09 7.05 -2.39 -0.02 2.07 16 33 H 0.03 1.53 5.24 -2.39 -0.01 1.52 16 34 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.25 17.88 7.97 -92.71 -0.74 17.14 16 Total: -1.00 -74.89 274.71 2.79 -72.10 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 1.07 Total: 13.74 kcal Atomic # 6 Polarization: -38.00 SS G_CDS: 3.92 Total: -34.08 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -3.61 Total: -86.53 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.65 Total: -20.34 kcal Atomic # 14 Polarization: 53.05 SS G_CDS: 2.05 Total: 55.10 kcal Total: -74.89 2.79 -72.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260353199.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.894 kcal (2) G-P(sol) polarization free energy of solvation -74.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds