Wall clock time and date at job start Mon Mar 30 2020 02:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47122 * 2 1 4 4 N 1.46902 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.46845 * 110.99968 * 293.95534 * 4 3 2 6 6 C 1.53038 * 109.52044 * 174.15922 * 5 4 3 7 7 C 1.53115 * 109.28035 * 59.18160 * 6 5 4 8 8 C 1.53120 * 109.15809 * 302.34488 * 7 6 5 9 9 O 1.42897 * 109.50372 * 297.67250 * 8 7 6 10 10 C 1.50702 * 109.50347 * 177.59548 * 8 7 6 11 11 H 1.08002 * 120.00299 * 240.00257 * 10 8 7 12 12 C 1.37884 * 119.99942 * 59.71816 * 10 8 7 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 8 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 8 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 C 1.46851 * 111.00066 * 169.74433 * 4 3 2 19 19 H 1.08994 * 109.46873 * 299.99984 * 1 2 3 20 20 H 1.09000 * 109.46889 * 59.99675 * 1 2 3 21 21 H 1.08997 * 109.47144 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46666 * 240.00226 * 2 1 3 23 23 H 1.09000 * 109.46889 * 120.00325 * 2 1 3 24 24 H 1.09007 * 109.47353 * 60.00106 * 3 2 1 25 25 H 1.09000 * 109.47504 * 299.99948 * 3 2 1 26 26 H 1.08998 * 109.46296 * 54.14491 * 5 4 3 27 27 H 1.08995 * 109.45530 * 294.17074 * 5 4 3 28 28 H 1.08997 * 109.50335 * 299.23805 * 6 5 4 29 29 H 1.09000 * 109.53419 * 179.14013 * 6 5 4 30 30 H 1.08994 * 109.52296 * 182.43706 * 7 6 5 31 31 H 1.08999 * 109.52240 * 62.24634 * 7 6 5 32 32 H 0.96703 * 113.99849 * 299.92623 * 9 8 7 33 33 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 34 34 H 1.08995 * 109.46009 * 65.82312 * 18 4 3 35 35 H 1.09003 * 109.45938 * 305.85792 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0358 0.8856 1.2519 6 6 5.5587 0.7665 1.1580 7 6 6.1593 2.1512 0.9009 8 6 5.5580 2.7292 -0.3833 9 8 5.9033 1.8937 -1.4899 10 6 6.0996 4.1168 -0.6122 11 1 5.4251 4.9590 -0.6579 12 6 7.4568 4.3119 -0.7576 13 7 8.2781 3.2862 -0.7020 14 14 8.1287 6.0327 -1.0338 15 1 7.7633 6.8974 0.1170 16 1 9.6073 5.9727 -1.1585 17 1 7.5498 6.5963 -2.2798 18 6 4.0353 2.7915 -0.2447 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6768 1.9563 -0.8900 26 1 3.6041 -0.1008 1.4207 27 1 3.7734 1.5435 2.0803 28 1 5.8215 0.0979 0.3383 29 1 5.9514 0.3675 2.0932 30 1 7.2401 2.0647 0.7902 31 1 5.9295 2.8092 1.7389 32 1 6.8555 1.8076 -1.6356 33 1 9.2329 3.4234 -0.8046 34 1 3.7728 3.4404 0.5908 35 1 3.6030 3.1893 -1.1629 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260718984.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:36 Heat of formation + Delta-G solvation = -63.015288 kcal Electronic energy + Delta-G solvation = -15219.347268 eV Core-core repulsion = 12830.583133 eV Total energy + Delta-G solvation = -2388.764136 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -38.50702 -35.60187 -33.18360 -31.97537 -30.95627 -29.04920 -25.73510 -25.07266 -22.39368 -21.64692 -20.20330 -18.50247 -16.85239 -15.24799 -15.00700 -14.90605 -14.36134 -13.76488 -13.43105 -13.20120 -13.05031 -12.48417 -11.95773 -11.59559 -11.54753 -11.27167 -11.21504 -11.03224 -10.94510 -10.58502 -10.45675 -10.16999 -10.09623 -9.86199 -9.55518 -8.91760 -8.49158 -7.85799 -7.50632 -6.11047 -4.22522 3.26962 3.31716 3.34692 4.32451 4.59228 5.12904 5.16592 5.27461 5.52307 5.70496 5.73386 5.87996 5.92114 5.99321 6.12249 6.13666 6.17483 6.32717 6.41025 6.47636 6.53414 6.63634 6.76411 6.82733 7.09462 7.26246 7.58585 7.71196 7.83495 7.90863 8.08265 8.28316 8.79673 9.46283 9.74237 10.91439 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.053318 B = 0.008143 C = 0.007613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.025300 B = 3437.547170 C = 3676.941504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.054 3.946 4 N -0.528 5.528 5 C 0.061 3.939 6 C -0.114 4.114 7 C -0.138 4.138 8 C 0.260 3.740 9 O -0.576 6.576 10 C -0.538 4.538 11 H 0.057 0.943 12 C 0.071 3.929 13 N -0.897 5.897 14 Si 0.899 3.101 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.080 3.920 19 H 0.049 0.951 20 H 0.053 0.947 21 H 0.051 0.949 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.021 0.979 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.018 0.982 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.093 0.907 31 H 0.036 0.964 32 H 0.373 0.627 33 H 0.266 0.734 34 H 0.027 0.973 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.311 -4.308 3.117 9.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.074 4.074 4 N -0.252 5.252 5 C -0.067 4.067 6 C -0.152 4.152 7 C -0.177 4.177 8 C 0.220 3.780 9 O -0.384 6.384 10 C -0.577 4.577 11 H 0.075 0.925 12 C -0.131 4.131 13 N -0.537 5.537 14 Si 0.726 3.274 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.047 4.047 19 H 0.068 0.932 20 H 0.072 0.928 21 H 0.070 0.930 22 H 0.088 0.912 23 H 0.077 0.923 24 H 0.040 0.960 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.036 0.964 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.055 0.945 32 H 0.222 0.778 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.615 -4.695 2.679 10.171 hybrid contribution 0.751 1.622 0.696 1.918 sum -7.865 -3.073 3.375 9.093 Atomic orbital electron populations 1.21741 0.96284 1.01196 1.01491 1.21541 0.94611 0.97184 1.02520 1.22114 0.89070 0.96321 0.99906 1.61908 1.05126 1.24113 1.34045 1.22074 0.96767 0.98124 0.89750 1.21582 0.93406 1.00221 0.99983 1.22236 1.03628 0.92987 0.98826 1.18516 0.87646 0.88190 0.83683 1.86193 1.29148 1.71154 1.51904 1.21722 0.92427 0.93820 1.49732 0.92511 1.24963 0.96767 0.97320 0.94004 1.69613 1.03740 1.29920 1.50463 0.86553 0.77670 0.84302 0.78830 1.20291 1.21154 1.20131 1.22110 0.97200 0.86566 0.98852 0.93181 0.92813 0.92955 0.91180 0.92257 0.96037 0.91362 0.92095 0.96364 0.91405 0.93796 0.88858 0.94523 0.77764 0.92349 0.95496 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.67 5.87 -26.73 -0.16 -1.82 16 3 C 0.05 0.89 4.96 -3.83 -0.02 0.87 16 4 N -0.53 -10.58 4.54 -234.67 -1.07 -11.64 16 5 C 0.06 1.14 5.29 -3.83 -0.02 1.12 16 6 C -0.11 -2.34 5.94 -26.65 -0.16 -2.49 16 7 C -0.14 -3.31 4.72 -26.61 -0.13 -3.44 16 8 C 0.26 6.61 0.68 -91.69 -0.06 6.55 16 9 O -0.58 -15.49 12.30 -35.23 -0.43 -15.92 16 10 C -0.54 -14.73 8.25 -34.44 -0.28 -15.01 16 11 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.07 1.90 5.22 -17.82 -0.09 1.81 16 13 N -0.90 -24.21 9.72 55.43 0.54 -23.67 16 14 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 C 0.08 1.81 4.37 -3.84 -0.02 1.80 16 19 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 20 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 23 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 24 H 0.02 0.34 8.12 -51.92 -0.42 -0.08 16 25 H 0.07 1.10 7.98 -51.93 -0.41 0.69 16 26 H 0.06 1.01 6.22 -51.93 -0.32 0.69 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 1.47 7.80 -51.93 -0.40 1.07 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.09 2.43 6.14 -51.93 -0.32 2.11 16 31 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.37 10.20 7.17 45.56 0.33 10.53 16 33 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 1.49 8.01 -51.93 -0.42 1.07 16 LS Contribution 271.70 15.07 4.09 4.09 Total: -1.00 -27.58 271.70 -7.68 -35.26 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.23 Total: 7.89 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -0.57 Total: -11.91 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: -0.53 Total: -35.31 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.43 Total: -15.92 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.58 -7.68 -35.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260718984.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.754 kcal (2) G-P(sol) polarization free energy of solvation -27.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds