Wall clock time and date at job start Mon Mar 30 2020 02:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47122 * 2 1 4 4 N 1.46902 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.46845 * 110.99968 * 293.95534 * 4 3 2 6 6 C 1.53038 * 109.52044 * 174.15922 * 5 4 3 7 7 C 1.53115 * 109.28035 * 59.18160 * 6 5 4 8 8 C 1.53120 * 109.15809 * 302.34488 * 7 6 5 9 9 O 1.42897 * 109.50372 * 297.67250 * 8 7 6 10 10 C 1.50702 * 109.50347 * 177.59548 * 8 7 6 11 11 H 1.08002 * 120.00299 * 240.00257 * 10 8 7 12 12 C 1.37884 * 119.99942 * 59.71816 * 10 8 7 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 8 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 8 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 C 1.46851 * 111.00066 * 169.74433 * 4 3 2 19 19 H 1.08994 * 109.46873 * 299.99984 * 1 2 3 20 20 H 1.09000 * 109.46889 * 59.99675 * 1 2 3 21 21 H 1.08997 * 109.47144 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46666 * 240.00226 * 2 1 3 23 23 H 1.09000 * 109.46889 * 120.00325 * 2 1 3 24 24 H 1.09007 * 109.47353 * 60.00106 * 3 2 1 25 25 H 1.09000 * 109.47504 * 299.99948 * 3 2 1 26 26 H 1.08998 * 109.46296 * 54.14491 * 5 4 3 27 27 H 1.08995 * 109.45530 * 294.17074 * 5 4 3 28 28 H 1.08997 * 109.50335 * 299.23805 * 6 5 4 29 29 H 1.09000 * 109.53419 * 179.14013 * 6 5 4 30 30 H 1.08994 * 109.52296 * 182.43706 * 7 6 5 31 31 H 1.08999 * 109.52240 * 62.24634 * 7 6 5 32 32 H 0.96703 * 113.99849 * 299.92623 * 9 8 7 33 33 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 34 34 H 1.08995 * 109.46009 * 65.82312 * 18 4 3 35 35 H 1.09003 * 109.45938 * 305.85792 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0358 0.8856 1.2519 6 6 5.5587 0.7665 1.1580 7 6 6.1593 2.1512 0.9009 8 6 5.5580 2.7292 -0.3833 9 8 5.9033 1.8937 -1.4899 10 6 6.0996 4.1168 -0.6122 11 1 5.4251 4.9590 -0.6579 12 6 7.4568 4.3119 -0.7576 13 7 8.2781 3.2862 -0.7020 14 14 8.1287 6.0327 -1.0338 15 1 7.7633 6.8974 0.1170 16 1 9.6073 5.9727 -1.1585 17 1 7.5498 6.5963 -2.2798 18 6 4.0353 2.7915 -0.2447 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6768 1.9563 -0.8900 26 1 3.6041 -0.1008 1.4207 27 1 3.7734 1.5435 2.0803 28 1 5.8215 0.0979 0.3383 29 1 5.9514 0.3675 2.0932 30 1 7.2401 2.0647 0.7902 31 1 5.9295 2.8092 1.7389 32 1 6.8555 1.8076 -1.6356 33 1 9.2329 3.4234 -0.8046 34 1 3.7728 3.4404 0.5908 35 1 3.6030 3.1893 -1.1629 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260718984.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:36 Heat of formation + Delta-G solvation = -81.839054 kcal Electronic energy + Delta-G solvation = -15220.163528 eV Core-core repulsion = 12830.583133 eV Total energy + Delta-G solvation = -2389.580395 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.20467 -37.30234 -34.64333 -34.06228 -32.49199 -30.89529 -27.16766 -26.93194 -23.88603 -23.33068 -21.56373 -20.33216 -18.86836 -16.99616 -16.82527 -16.26142 -16.06318 -15.43105 -15.12450 -14.72249 -14.62863 -13.90534 -13.58446 -13.34536 -13.11889 -12.88439 -12.78172 -12.60986 -12.45881 -12.21798 -12.09615 -11.85996 -11.74289 -11.44333 -11.35428 -10.74249 -10.53577 -9.88754 -9.06004 -8.14660 -6.34675 1.41099 1.42303 1.49978 2.38974 3.05158 3.10904 3.97662 4.05029 4.15837 4.29204 4.33313 4.46966 4.55626 4.60039 4.66426 4.77087 4.80635 4.87748 4.89984 5.04593 5.11154 5.23085 5.28467 5.36278 5.39879 5.47438 5.57390 5.76194 6.05634 6.12168 6.34221 6.41737 6.72183 7.37051 7.60991 8.85408 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.053318 B = 0.008143 C = 0.007613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.025300 B = 3437.547170 C = 3676.941504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C 0.053 3.947 4 N -0.543 5.543 5 C 0.063 3.937 6 C -0.108 4.108 7 C -0.131 4.131 8 C 0.246 3.754 9 O -0.584 6.584 10 C -0.569 4.569 11 H 0.049 0.951 12 C 0.031 3.969 13 N -0.910 5.910 14 Si 0.959 3.041 15 H -0.273 1.273 16 H -0.279 1.279 17 H -0.276 1.276 18 C 0.088 3.912 19 H 0.057 0.943 20 H 0.055 0.945 21 H 0.067 0.933 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.031 0.969 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.024 0.976 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.367 0.633 33 H 0.269 0.731 34 H 0.027 0.973 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.311 -4.661 3.835 11.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.075 4.075 4 N -0.267 5.267 5 C -0.065 4.065 6 C -0.146 4.146 7 C -0.170 4.170 8 C 0.207 3.793 9 O -0.391 6.391 10 C -0.607 4.607 11 H 0.067 0.933 12 C -0.169 4.169 13 N -0.550 5.550 14 Si 0.784 3.216 15 H -0.198 1.198 16 H -0.204 1.204 17 H -0.201 1.201 18 C -0.040 4.040 19 H 0.076 0.924 20 H 0.074 0.926 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.049 0.951 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.215 0.785 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.633 -5.059 3.403 11.401 hybrid contribution 1.062 1.717 0.464 2.071 sum -8.572 -3.342 3.867 9.980 Atomic orbital electron populations 1.21698 0.94021 1.02439 1.02003 1.21494 0.96502 0.95019 1.02214 1.22228 0.86687 0.98374 1.00209 1.61872 1.07491 1.22252 1.35094 1.22099 0.95375 0.99664 0.89313 1.21518 0.94875 0.97579 1.00645 1.22057 1.02123 0.94985 0.97827 1.18739 0.89520 0.87318 0.83760 1.86184 1.28544 1.71538 1.52862 1.22017 0.93045 0.94694 1.50951 0.93292 1.25653 0.96900 1.00798 0.93582 1.69713 1.03887 1.31334 1.50102 0.85616 0.77209 0.80153 0.78614 1.19824 1.20398 1.20117 1.21872 0.95451 0.88328 0.98325 0.92386 0.92634 0.91370 0.92294 0.91711 0.95077 0.91675 0.89225 0.95787 0.92888 0.91247 0.91394 0.95171 0.78540 0.92179 0.95501 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.91 71.98 0.71 -2.04 16 2 C -0.11 -2.87 5.87 30.60 0.18 -2.69 16 3 C 0.05 1.63 4.96 86.30 0.43 2.05 16 4 N -0.54 -21.11 4.54 -896.37 -4.07 -25.18 16 5 C 0.06 2.23 5.29 86.33 0.46 2.69 16 6 C -0.11 -4.31 5.94 30.65 0.18 -4.13 16 7 C -0.13 -6.32 4.72 30.67 0.14 -6.18 16 8 C 0.25 12.69 0.68 -11.49 -0.01 12.68 16 9 O -0.58 -31.99 12.30 -148.98 -1.83 -33.82 16 10 C -0.57 -31.58 8.25 25.60 0.21 -31.37 16 11 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 12 C 0.03 1.66 5.22 84.66 0.44 2.10 16 13 N -0.91 -49.62 9.72 21.45 0.21 -49.41 16 14 Si 0.96 42.96 29.54 68.60 2.03 44.99 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 16 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 C 0.09 4.01 4.37 86.32 0.38 4.38 16 19 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 20 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 21 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.06 1.55 6.44 -2.39 -0.02 1.53 16 24 H 0.03 0.91 8.12 -2.38 -0.02 0.89 16 25 H 0.06 2.03 7.98 -2.39 -0.02 2.01 16 26 H 0.09 2.68 6.22 -2.39 -0.01 2.67 16 27 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 2.26 7.80 -2.39 -0.02 2.24 16 29 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.07 3.59 6.14 -2.39 -0.01 3.58 16 31 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.37 20.59 7.17 -74.05 -0.53 20.06 16 33 H 0.27 13.93 8.31 -92.70 -0.77 13.16 16 34 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 2.46 8.01 -2.39 -0.02 2.44 16 Total: -1.00 -58.38 271.70 -0.02 -58.40 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.52 Total: 27.52 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 3.13 Total: -22.50 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -3.86 Total: -74.59 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -1.83 Total: -33.82 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -58.38 -0.02 -58.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260718984.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.442 kcal (2) G-P(sol) polarization free energy of solvation -58.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds