Wall clock time and date at job start Mon Mar 30 2020 02:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47490 * 2 1 4 4 N 1.46895 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.46843 * 111.00176 * 45.79114 * 4 3 2 6 6 C 1.53036 * 109.52293 * 185.83992 * 5 4 3 7 7 C 1.53117 * 109.27815 * 300.81512 * 6 5 4 8 8 C 1.53126 * 109.15840 * 57.65820 * 7 6 5 9 9 O 1.42896 * 109.53708 * 62.30475 * 8 7 6 10 10 C 1.50704 * 109.50001 * 182.40507 * 8 7 6 11 11 H 1.08002 * 119.99888 * 115.69697 * 10 8 7 12 12 C 1.37877 * 120.00155 * 295.68868 * 10 8 7 13 13 N 1.31520 * 119.99610 * 6.09705 * 12 10 8 14 14 Si 1.86793 * 120.00067 * 186.10245 * 12 10 8 15 15 H 1.48504 * 109.47103 * 84.99486 * 14 12 10 16 16 H 1.48505 * 109.47003 * 204.99385 * 14 12 10 17 17 H 1.48499 * 109.47319 * 324.99589 * 14 12 10 18 18 C 1.46856 * 110.99817 * 169.99680 * 4 3 2 19 19 H 1.08996 * 109.47529 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.46882 * 300.00270 * 1 2 3 21 21 H 1.09000 * 109.46830 * 59.99579 * 1 2 3 22 22 H 1.09000 * 109.46830 * 120.00421 * 2 1 3 23 23 H 1.09002 * 109.46396 * 239.99709 * 2 1 3 24 24 H 1.09007 * 109.46602 * 300.00108 * 3 2 1 25 25 H 1.08998 * 109.47442 * 59.99656 * 3 2 1 26 26 H 1.08997 * 109.46158 * 305.85125 * 5 4 3 27 27 H 1.08992 * 109.46836 * 65.82300 * 5 4 3 28 28 H 1.09001 * 109.50498 * 180.87633 * 6 5 4 29 29 H 1.09002 * 109.50395 * 60.75698 * 6 5 4 30 30 H 1.08997 * 109.52627 * 297.75273 * 7 6 5 31 31 H 1.09002 * 109.57627 * 177.59072 * 7 6 5 32 32 H 0.96701 * 113.99820 * 64.36878 * 9 8 7 33 33 H 0.97003 * 119.99421 * 179.97438 * 13 12 10 34 34 H 1.08994 * 109.46221 * 294.17474 * 18 4 3 35 35 H 1.08997 * 109.45826 * 54.15397 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 3.5091 1.4423 -0.0006 5 6 4.0349 0.4865 -0.9836 6 6 5.5578 0.4068 -0.8556 7 6 6.1585 1.7950 -1.0939 8 6 5.5583 2.7816 -0.0884 9 8 5.9038 2.3808 1.2389 10 6 6.0999 4.1626 -0.3541 11 1 5.4341 4.9523 -0.6697 12 6 7.4454 4.4180 -0.1942 13 7 8.2745 3.4327 0.0729 14 14 8.0904 6.1635 -0.3568 15 1 7.9476 6.8671 0.9432 16 1 9.5233 6.1275 -0.7453 17 1 7.3134 6.8836 -1.3973 18 6 4.0354 2.7925 -0.2388 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8934 -0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.6768 1.9562 -0.8901 25 1 1.6768 1.9563 0.8899 26 1 3.6031 -0.4974 -0.8004 27 1 3.7718 0.8170 -1.9884 28 1 5.9493 -0.2910 -1.5958 29 1 5.8214 0.0631 0.1447 30 1 5.9280 2.1225 -2.1076 31 1 7.2396 1.7527 -0.9617 32 1 6.8522 2.4131 1.4252 33 1 9.2211 3.6123 0.1850 34 1 3.7722 3.1122 -1.2470 35 1 3.6040 3.4833 0.4855 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260718987.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:41 Heat of formation + Delta-G solvation = -60.196790 kcal Electronic energy + Delta-G solvation = -15233.932312 eV Core-core repulsion = 12845.290395 eV Total energy + Delta-G solvation = -2388.641916 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.56348 -35.68376 -33.14057 -31.93933 -30.98435 -29.06021 -25.72456 -25.11175 -22.52826 -21.73563 -19.96596 -18.51279 -16.87790 -15.32423 -15.03058 -14.91203 -14.37792 -13.76653 -13.40471 -13.18661 -13.08638 -12.44560 -11.97936 -11.60834 -11.55351 -11.31054 -11.27656 -11.00722 -10.93586 -10.55995 -10.49469 -10.17363 -10.07852 -9.83223 -9.53167 -8.91162 -8.52837 -7.85726 -7.48185 -6.12098 -4.23386 3.26014 3.32455 3.35093 4.32277 4.60962 5.11113 5.13849 5.21036 5.47665 5.72839 5.72939 5.87060 5.90749 5.97670 6.09541 6.12935 6.18026 6.34002 6.39331 6.45047 6.50670 6.64016 6.77187 6.83020 7.09760 7.27974 7.58254 7.71918 7.84562 7.91324 8.07947 8.26128 8.78808 9.45810 9.74028 10.90089 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.054603 B = 0.008138 C = 0.007581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.671006 B = 3439.874379 C = 3692.545234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.054 3.946 4 N -0.528 5.528 5 C 0.057 3.943 6 C -0.115 4.115 7 C -0.136 4.136 8 C 0.260 3.740 9 O -0.577 6.577 10 C -0.539 4.539 11 H 0.058 0.942 12 C 0.070 3.930 13 N -0.896 5.896 14 Si 0.899 3.101 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.080 3.920 19 H 0.051 0.949 20 H 0.053 0.947 21 H 0.050 0.950 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.022 0.978 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.018 0.982 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.091 0.909 32 H 0.374 0.626 33 H 0.266 0.734 34 H 0.027 0.973 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.371 -5.172 -1.719 9.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.074 4.074 4 N -0.252 5.252 5 C -0.071 4.071 6 C -0.152 4.152 7 C -0.175 4.175 8 C 0.219 3.781 9 O -0.384 6.384 10 C -0.578 4.578 11 H 0.076 0.924 12 C -0.131 4.131 13 N -0.537 5.537 14 Si 0.726 3.274 15 H -0.204 1.204 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.047 4.047 19 H 0.071 0.929 20 H 0.072 0.928 21 H 0.069 0.931 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.040 0.960 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.036 0.964 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.109 0.891 32 H 0.224 0.776 33 H 0.076 0.924 34 H 0.045 0.955 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.676 -5.428 -1.182 10.302 hybrid contribution 0.737 1.364 -1.072 1.885 sum -7.939 -4.065 -2.255 9.199 Atomic orbital electron populations 1.21742 0.96141 1.01223 1.01602 1.21690 0.95041 0.97283 1.02503 1.22141 0.89082 0.96169 0.99996 1.61980 1.05075 1.08479 1.49653 1.22144 0.96737 0.95812 0.92374 1.21590 0.93464 0.98990 1.01188 1.22225 1.03419 0.93105 0.98715 1.18508 0.87641 0.91048 0.80871 1.86184 1.29958 1.90282 1.32025 1.21756 0.93473 0.96346 1.46220 0.92418 1.24968 0.96579 0.97456 0.94082 1.69636 1.03918 1.30739 1.49401 0.86512 0.77806 0.84522 0.78534 1.20383 1.21183 1.20012 1.22121 0.97190 0.87659 0.97764 0.92945 0.92758 0.93086 0.91203 0.91887 0.95957 0.91286 0.91665 0.96419 0.93836 0.91394 0.94548 0.89077 0.77629 0.92358 0.95490 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 37.16 0.37 -1.26 16 2 C -0.13 -1.73 5.18 -26.73 -0.14 -1.86 16 3 C 0.05 0.89 5.27 -3.83 -0.02 0.87 16 4 N -0.53 -10.61 4.69 -234.68 -1.10 -11.71 16 5 C 0.06 1.07 4.85 -3.84 -0.02 1.05 16 6 C -0.11 -2.35 5.94 -26.65 -0.16 -2.51 16 7 C -0.14 -3.27 4.79 -26.61 -0.13 -3.40 16 8 C 0.26 6.62 0.69 -91.69 -0.06 6.56 16 9 O -0.58 -15.55 12.30 -35.23 -0.43 -15.98 16 10 C -0.54 -14.75 8.22 -34.44 -0.28 -15.03 16 11 H 0.06 1.57 7.75 -52.49 -0.41 1.16 16 12 C 0.07 1.89 5.19 -17.82 -0.09 1.80 16 13 N -0.90 -24.21 9.75 55.43 0.54 -23.67 16 14 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 C 0.08 1.82 4.34 -3.83 -0.02 1.80 16 19 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 20 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.06 0.84 6.21 -51.93 -0.32 0.52 16 24 H 0.02 0.36 8.08 -51.93 -0.42 -0.06 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.07 1.07 5.81 -51.93 -0.30 0.77 16 27 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.48 7.80 -51.93 -0.41 1.08 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.09 2.38 6.26 -51.93 -0.33 2.06 16 32 H 0.37 10.29 6.97 45.56 0.32 10.61 16 33 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 1.50 8.12 -51.93 -0.42 1.07 16 LS Contribution 270.59 15.07 4.08 4.08 Total: -1.00 -27.66 270.59 -7.71 -35.37 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.22 Total: 8.02 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -0.55 Total: -11.99 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: -0.56 Total: -35.39 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.43 Total: -15.98 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.66 -7.71 -35.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260718987.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.827 kcal (2) G-P(sol) polarization free energy of solvation -27.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds