Wall clock time and date at job start Mon Mar 30 2020 02:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47490 * 2 1 4 4 N 1.46895 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.46843 * 111.00176 * 45.79114 * 4 3 2 6 6 C 1.53036 * 109.52293 * 185.83992 * 5 4 3 7 7 C 1.53117 * 109.27815 * 300.81512 * 6 5 4 8 8 C 1.53126 * 109.15840 * 57.65820 * 7 6 5 9 9 O 1.42896 * 109.53708 * 62.30475 * 8 7 6 10 10 C 1.50704 * 109.50001 * 182.40507 * 8 7 6 11 11 H 1.08002 * 119.99888 * 115.69697 * 10 8 7 12 12 C 1.37877 * 120.00155 * 295.68868 * 10 8 7 13 13 N 1.31520 * 119.99610 * 6.09705 * 12 10 8 14 14 Si 1.86793 * 120.00067 * 186.10245 * 12 10 8 15 15 H 1.48504 * 109.47103 * 84.99486 * 14 12 10 16 16 H 1.48505 * 109.47003 * 204.99385 * 14 12 10 17 17 H 1.48499 * 109.47319 * 324.99589 * 14 12 10 18 18 C 1.46856 * 110.99817 * 169.99680 * 4 3 2 19 19 H 1.08996 * 109.47529 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.46882 * 300.00270 * 1 2 3 21 21 H 1.09000 * 109.46830 * 59.99579 * 1 2 3 22 22 H 1.09000 * 109.46830 * 120.00421 * 2 1 3 23 23 H 1.09002 * 109.46396 * 239.99709 * 2 1 3 24 24 H 1.09007 * 109.46602 * 300.00108 * 3 2 1 25 25 H 1.08998 * 109.47442 * 59.99656 * 3 2 1 26 26 H 1.08997 * 109.46158 * 305.85125 * 5 4 3 27 27 H 1.08992 * 109.46836 * 65.82300 * 5 4 3 28 28 H 1.09001 * 109.50498 * 180.87633 * 6 5 4 29 29 H 1.09002 * 109.50395 * 60.75698 * 6 5 4 30 30 H 1.08997 * 109.52627 * 297.75273 * 7 6 5 31 31 H 1.09002 * 109.57627 * 177.59072 * 7 6 5 32 32 H 0.96701 * 113.99820 * 64.36878 * 9 8 7 33 33 H 0.97003 * 119.99421 * 179.97438 * 13 12 10 34 34 H 1.08994 * 109.46221 * 294.17474 * 18 4 3 35 35 H 1.08997 * 109.45826 * 54.15397 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 3.5091 1.4423 -0.0006 5 6 4.0349 0.4865 -0.9836 6 6 5.5578 0.4068 -0.8556 7 6 6.1585 1.7950 -1.0939 8 6 5.5583 2.7816 -0.0884 9 8 5.9038 2.3808 1.2389 10 6 6.0999 4.1626 -0.3541 11 1 5.4341 4.9523 -0.6697 12 6 7.4454 4.4180 -0.1942 13 7 8.2745 3.4327 0.0729 14 14 8.0904 6.1635 -0.3568 15 1 7.9476 6.8671 0.9432 16 1 9.5233 6.1275 -0.7453 17 1 7.3134 6.8836 -1.3973 18 6 4.0354 2.7925 -0.2388 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8934 -0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.6768 1.9562 -0.8901 25 1 1.6768 1.9563 0.8899 26 1 3.6031 -0.4974 -0.8004 27 1 3.7718 0.8170 -1.9884 28 1 5.9493 -0.2910 -1.5958 29 1 5.8214 0.0631 0.1447 30 1 5.9280 2.1225 -2.1076 31 1 7.2396 1.7527 -0.9617 32 1 6.8522 2.4131 1.4252 33 1 9.2211 3.6123 0.1850 34 1 3.7722 3.1122 -1.2470 35 1 3.6040 3.4833 0.4855 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260718987.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:40 Heat of formation + Delta-G solvation = -79.248947 kcal Electronic energy + Delta-G solvation = -15234.758475 eV Core-core repulsion = 12845.290395 eV Total energy + Delta-G solvation = -2389.468080 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.25050 -37.39302 -34.61234 -34.02606 -32.52067 -30.89329 -27.19081 -26.93587 -23.98527 -23.43613 -21.36959 -20.32643 -18.89115 -17.02722 -16.86031 -16.23743 -16.10887 -15.46709 -15.10810 -14.69997 -14.66698 -13.88247 -13.59798 -13.33598 -13.09665 -12.91318 -12.80451 -12.67924 -12.45438 -12.22186 -12.07906 -11.88441 -11.67339 -11.43000 -11.34566 -10.74498 -10.58062 -9.88443 -9.04332 -8.15823 -6.35576 1.40198 1.42402 1.50736 2.38524 3.04187 3.11519 3.97166 4.06391 4.12581 4.28629 4.30779 4.45717 4.52514 4.60035 4.67596 4.77328 4.84136 4.87285 4.89511 5.01821 5.12181 5.20710 5.28218 5.35100 5.40757 5.43595 5.57005 5.76929 6.05357 6.10822 6.32713 6.41552 6.71207 7.36477 7.59808 8.84221 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.054603 B = 0.008138 C = 0.007581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.671006 B = 3439.874379 C = 3692.545234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C 0.053 3.947 4 N -0.543 5.543 5 C 0.060 3.940 6 C -0.109 4.109 7 C -0.130 4.130 8 C 0.246 3.754 9 O -0.584 6.584 10 C -0.569 4.569 11 H 0.050 0.950 12 C 0.030 3.970 13 N -0.911 5.911 14 Si 0.959 3.041 15 H -0.276 1.276 16 H -0.279 1.279 17 H -0.273 1.273 18 C 0.088 3.912 19 H 0.069 0.931 20 H 0.056 0.944 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.027 0.973 25 H 0.066 0.934 26 H 0.095 0.905 27 H 0.023 0.977 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.030 0.970 31 H 0.064 0.936 32 H 0.367 0.633 33 H 0.269 0.731 34 H 0.027 0.973 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.382 -5.761 -2.230 11.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.075 4.075 4 N -0.268 5.268 5 C -0.068 4.068 6 C -0.147 4.147 7 C -0.168 4.168 8 C 0.206 3.794 9 O -0.392 6.392 10 C -0.607 4.607 11 H 0.068 0.932 12 C -0.170 4.170 13 N -0.551 5.551 14 Si 0.785 3.215 15 H -0.202 1.202 16 H -0.204 1.204 17 H -0.198 1.198 18 C -0.040 4.040 19 H 0.088 0.912 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.045 0.955 25 H 0.085 0.915 26 H 0.113 0.887 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.216 0.784 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.704 -6.030 -1.697 11.550 hybrid contribution 1.052 1.536 -0.902 2.069 sum -8.652 -4.494 -2.599 10.090 Atomic orbital electron populations 1.21703 0.94000 1.02502 1.02005 1.21643 0.96845 0.94920 1.02470 1.22247 0.86677 0.98461 1.00112 1.61920 1.07480 1.07003 1.50372 1.22176 0.95270 0.96939 0.92374 1.21531 0.95003 0.97129 1.01032 1.22050 1.01865 0.95076 0.97835 1.18733 0.89504 0.90731 0.80407 1.86175 1.29340 1.90404 1.33245 1.22035 0.94065 0.97310 1.47320 0.93206 1.25660 0.96670 1.00991 0.93645 1.69732 1.04097 1.32145 1.49102 0.85565 0.77370 0.80179 0.78410 1.20198 1.20436 1.19755 1.21882 0.95441 0.89337 0.97319 0.91242 0.92535 0.92569 0.91738 0.91322 0.95451 0.91535 0.88685 0.95832 0.91252 0.92951 0.95143 0.91698 0.78432 0.92141 0.95513 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.91 71.98 0.71 -2.00 16 2 C -0.12 -2.94 5.18 30.60 0.16 -2.78 16 3 C 0.05 1.63 5.27 86.30 0.46 2.08 16 4 N -0.54 -21.23 4.69 -896.40 -4.20 -25.43 16 5 C 0.06 2.12 4.85 86.33 0.42 2.53 16 6 C -0.11 -4.36 5.94 30.65 0.18 -4.18 16 7 C -0.13 -6.27 4.79 30.68 0.15 -6.13 16 8 C 0.25 12.72 0.69 -11.48 -0.01 12.71 16 9 O -0.58 -32.10 12.30 -148.98 -1.83 -33.93 16 10 C -0.57 -31.60 8.22 25.60 0.21 -31.39 16 11 H 0.05 2.76 7.75 -2.91 -0.02 2.74 16 12 C 0.03 1.63 5.19 84.65 0.44 2.07 16 13 N -0.91 -49.71 9.75 21.45 0.21 -49.50 16 14 Si 0.96 43.00 29.54 68.60 2.03 45.02 16 15 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 16 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 C 0.09 4.02 4.34 86.32 0.37 4.40 16 19 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 20 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 21 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.07 1.59 6.21 -2.39 -0.01 1.58 16 24 H 0.03 0.83 8.08 -2.38 -0.02 0.81 16 25 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.10 2.82 5.81 -2.39 -0.01 2.80 16 27 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.05 2.25 7.80 -2.39 -0.02 2.23 16 30 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 3.45 6.26 -2.39 -0.01 3.44 16 32 H 0.37 20.75 6.97 -74.06 -0.52 20.23 16 33 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 34 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 2.47 8.12 -2.39 -0.02 2.45 16 Total: -1.00 -58.65 270.59 -0.17 -58.82 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.54 Total: 27.69 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 3.09 Total: -22.68 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -3.99 Total: -74.93 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -1.83 Total: -33.93 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -58.65 -0.17 -58.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260718987.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.430 kcal (2) G-P(sol) polarization free energy of solvation -58.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds