Wall clock time and date at job start Mon Mar 30 2020 04:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.45413 * 2 1 4 4 C 1.53037 * 109.45983 * 240.03025 * 2 1 3 5 5 C 1.53110 * 109.27667 * 180.80540 * 4 2 1 6 6 O 1.42897 * 109.52330 * 297.74618 * 5 4 2 7 7 C 1.50709 * 109.52448 * 177.55497 * 5 4 2 8 8 H 1.07998 * 120.00289 * 267.44824 * 7 5 4 9 9 C 1.37878 * 119.99523 * 87.43777 * 7 5 4 10 10 N 1.31512 * 119.99429 * 174.15614 * 9 7 5 11 11 Si 1.86799 * 120.00208 * 354.16341 * 9 7 5 12 12 H 1.48502 * 109.47058 * 86.45688 * 11 9 7 13 13 H 1.48504 * 109.47053 * 206.45715 * 11 9 7 14 14 H 1.48501 * 109.47206 * 326.45766 * 11 9 7 15 15 C 1.53121 * 109.15552 * 57.66242 * 5 4 2 16 16 C 1.53048 * 109.27347 * 302.32539 * 15 5 4 17 17 H 1.08992 * 109.46476 * 299.18358 * 16 15 5 18 18 C 1.52999 * 109.46160 * 179.20513 * 16 15 5 19 19 N 1.46841 * 109.46178 * 119.97453 * 2 1 3 20 20 C 1.46899 * 111.00419 * 305.85161 * 19 2 1 21 21 H 1.09004 * 109.46781 * 300.02357 * 1 2 3 22 22 H 1.09002 * 109.47155 * 60.01935 * 1 2 3 23 23 H 1.08998 * 109.47312 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.50009 * 300.74662 * 4 2 1 25 25 H 1.08997 * 109.50383 * 60.82235 * 4 2 1 26 26 H 0.96701 * 113.99809 * 174.92733 * 6 5 4 27 27 H 0.97008 * 119.99714 * 180.02562 * 10 9 7 28 28 H 1.09000 * 109.49747 * 182.39829 * 15 5 4 29 29 H 1.08999 * 109.51603 * 62.27057 * 15 5 4 30 30 H 1.09000 * 109.46962 * 299.97909 * 18 16 15 31 31 H 1.08999 * 109.47343 * 179.97438 * 18 16 15 32 32 H 1.09002 * 109.46686 * 59.97980 * 18 16 15 33 33 H 1.09001 * 109.47146 * 295.79253 * 20 19 2 34 34 H 1.09010 * 109.46934 * 55.79569 * 20 19 2 35 35 H 1.09000 * 109.47128 * 175.78602 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5709 -0.7360 -1.2357 6 8 4.0621 0.6052 -1.2771 7 6 4.0783 -1.4968 -2.4336 8 1 4.2868 -2.5535 -2.3536 9 6 4.2760 -0.8438 -3.6317 10 7 4.8262 -1.4788 -4.6435 11 14 3.7628 0.9426 -3.8177 12 1 4.8637 1.8247 -3.3538 13 1 3.4687 1.2270 -5.2453 14 1 2.5482 1.1962 -3.0019 15 6 4.0546 -1.4190 0.0466 16 6 3.4865 -0.6777 1.2590 17 1 3.8404 0.3531 1.2530 18 6 3.9511 -1.3687 2.5426 19 7 2.0193 -0.6917 1.1993 20 6 1.4374 -0.1106 2.4165 21 1 -0.3633 0.5142 0.8898 22 1 -0.3633 0.5135 -0.8902 23 1 -0.3634 -1.0276 0.0005 24 1 1.6658 -1.7446 -1.2577 25 1 1.6889 -0.1985 -2.1399 26 1 5.0229 0.6749 -1.1926 27 1 4.9657 -1.0193 -5.4864 28 1 5.1437 -1.3950 0.0829 29 1 3.7121 -2.4537 0.0594 30 1 3.5973 -2.3996 2.5488 31 1 3.5471 -0.8406 3.4063 32 1 5.0402 -1.3580 2.5872 33 1 1.7730 0.9210 2.5230 34 1 0.3499 -0.1335 2.3461 35 1 1.7574 -0.6882 3.2838 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260812039.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:31 Heat of formation + Delta-G solvation = -51.109601 kcal Electronic energy + Delta-G solvation = -15730.383763 eV Core-core repulsion = 13342.135897 eV Total energy + Delta-G solvation = -2388.247866 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.27938 -35.98033 -33.12635 -32.22604 -31.23339 -28.21452 -26.44009 -25.78910 -24.11456 -20.63378 -20.14331 -18.93967 -17.03844 -15.45982 -15.28427 -15.05607 -14.63984 -14.24841 -13.45930 -13.09686 -12.74681 -12.48165 -12.27511 -11.86037 -11.68121 -11.49662 -11.27560 -11.16552 -11.06857 -11.00001 -10.57919 -10.17926 -10.06020 -9.84479 -9.79308 -8.97409 -8.43742 -8.24942 -7.74860 -6.06797 -4.16547 3.52812 3.59507 3.77736 4.31967 4.60556 5.18493 5.29061 5.37495 5.43155 5.50911 5.63943 5.75655 5.78464 5.82006 5.88128 5.98152 6.12030 6.20591 6.27336 6.30749 6.35060 6.44056 6.50159 6.59922 6.83301 7.00035 7.06864 7.38250 7.59699 7.68030 7.71487 8.27342 8.77140 8.96362 9.56825 11.02893 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037978 B = 0.012275 C = 0.010669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.094804 B = 2280.486592 C = 2623.704640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.079 3.921 3 H 0.041 0.959 4 C -0.090 4.090 5 C 0.221 3.779 6 O -0.569 6.569 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.070 3.930 10 N -0.896 5.896 11 Si 0.951 3.049 12 H -0.296 1.296 13 H -0.331 1.331 14 H -0.267 1.267 15 C -0.119 4.119 16 C 0.082 3.918 17 H 0.039 0.961 18 C -0.145 4.145 19 N -0.531 5.531 20 C 0.019 3.981 21 H 0.048 0.952 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.365 0.635 27 H 0.263 0.737 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.016 0.984 34 H 0.066 0.934 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.804 3.274 12.053 13.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 H 0.059 0.941 4 C -0.128 4.128 5 C 0.182 3.818 6 O -0.376 6.376 7 C -0.590 4.590 8 H 0.093 0.907 9 C -0.134 4.134 10 N -0.533 5.533 11 Si 0.787 3.213 12 H -0.224 1.224 13 H -0.263 1.263 14 H -0.194 1.194 15 C -0.158 4.158 16 C -0.026 4.026 17 H 0.057 0.943 18 C -0.203 4.203 19 N -0.257 5.257 20 C -0.130 4.130 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.212 0.788 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.085 0.915 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.527 2.889 11.788 13.336 hybrid contribution 0.689 1.542 -0.111 1.693 sum -4.838 4.431 11.677 13.394 Atomic orbital electron populations 1.21945 0.95611 1.02021 1.00809 1.21711 0.93989 0.96199 0.90991 0.94127 1.21880 0.95826 1.00182 0.94884 1.19274 0.90758 0.79002 0.92804 1.86108 1.26268 1.31284 1.93965 1.21395 1.45950 0.97589 0.94074 0.90669 1.25137 0.93214 0.99781 0.95258 1.69992 1.41921 1.38016 1.03323 0.85679 0.79938 0.83122 0.72528 1.22418 1.26313 1.19359 1.22207 0.99335 1.00230 0.93987 1.21634 0.86985 0.98229 0.95786 0.94312 1.21925 1.00473 1.01196 0.96679 1.61995 1.07213 1.54807 1.01712 1.22466 1.00128 0.96848 0.93532 0.93292 0.92563 0.92045 0.91015 0.91501 0.78772 0.92740 0.92168 0.91272 0.92085 0.93254 0.92598 0.96527 0.91512 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.77 37.16 0.33 -1.92 16 2 C 0.08 1.46 2.31 -67.72 -0.16 1.30 16 3 H 0.04 0.82 7.76 -51.93 -0.40 0.41 16 4 C -0.09 -1.94 4.12 -26.66 -0.11 -2.05 16 5 C 0.22 5.03 0.54 -91.65 -0.05 4.98 16 6 O -0.57 -12.74 7.23 -35.23 -0.25 -12.99 16 7 C -0.55 -15.21 8.77 -34.44 -0.30 -15.51 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 9 C 0.07 2.00 5.46 -17.82 -0.10 1.90 16 10 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 11 Si 0.95 24.31 24.34 -169.99 -4.14 20.17 16 12 H -0.30 -7.44 7.11 56.52 0.40 -7.03 16 13 H -0.33 -8.71 7.11 56.52 0.40 -8.31 16 14 H -0.27 -6.71 5.30 56.52 0.30 -6.41 16 15 C -0.12 -2.36 4.30 -26.64 -0.11 -2.47 16 16 C 0.08 1.40 2.31 -67.72 -0.16 1.24 16 17 H 0.04 0.70 7.76 -51.93 -0.40 0.30 16 18 C -0.15 -2.03 8.76 37.16 0.33 -1.70 16 19 N -0.53 -9.02 4.58 -226.94 -1.04 -10.06 16 20 C 0.02 0.26 8.64 60.06 0.52 0.78 16 21 H 0.05 0.65 6.23 -51.93 -0.32 0.33 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 25 H 0.07 1.55 5.76 -51.93 -0.30 1.25 16 26 H 0.37 7.38 8.89 45.56 0.41 7.78 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.61 6.33 -51.93 -0.33 0.28 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.85 5.96 -51.92 -0.31 0.54 16 35 H 0.06 0.81 6.21 -51.93 -0.32 0.49 16 LS Contribution 260.03 15.07 3.92 3.92 Total: -1.00 -30.45 260.03 -5.58 -36.03 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -5.03 Total: 3.09 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 0.18 Total: -13.46 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: -0.27 Total: -36.76 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.25 Total: -12.99 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -4.14 Total: 20.17 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.45 -5.58 -36.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260812039.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.080 kcal (2) G-P(sol) polarization free energy of solvation -30.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds