Wall clock time and date at job start Mon Mar 30 2020 04:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.45413 * 2 1 4 4 C 1.53037 * 109.45983 * 240.03025 * 2 1 3 5 5 C 1.53110 * 109.27667 * 180.80540 * 4 2 1 6 6 O 1.42897 * 109.52330 * 297.74618 * 5 4 2 7 7 C 1.50709 * 109.52448 * 177.55497 * 5 4 2 8 8 H 1.07998 * 120.00289 * 267.44824 * 7 5 4 9 9 C 1.37878 * 119.99523 * 87.43777 * 7 5 4 10 10 N 1.31512 * 119.99429 * 174.15614 * 9 7 5 11 11 Si 1.86799 * 120.00208 * 354.16341 * 9 7 5 12 12 H 1.48502 * 109.47058 * 86.45688 * 11 9 7 13 13 H 1.48504 * 109.47053 * 206.45715 * 11 9 7 14 14 H 1.48501 * 109.47206 * 326.45766 * 11 9 7 15 15 C 1.53121 * 109.15552 * 57.66242 * 5 4 2 16 16 C 1.53048 * 109.27347 * 302.32539 * 15 5 4 17 17 H 1.08992 * 109.46476 * 299.18358 * 16 15 5 18 18 C 1.52999 * 109.46160 * 179.20513 * 16 15 5 19 19 N 1.46841 * 109.46178 * 119.97453 * 2 1 3 20 20 C 1.46899 * 111.00419 * 305.85161 * 19 2 1 21 21 H 1.09004 * 109.46781 * 300.02357 * 1 2 3 22 22 H 1.09002 * 109.47155 * 60.01935 * 1 2 3 23 23 H 1.08998 * 109.47312 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.50009 * 300.74662 * 4 2 1 25 25 H 1.08997 * 109.50383 * 60.82235 * 4 2 1 26 26 H 0.96701 * 113.99809 * 174.92733 * 6 5 4 27 27 H 0.97008 * 119.99714 * 180.02562 * 10 9 7 28 28 H 1.09000 * 109.49747 * 182.39829 * 15 5 4 29 29 H 1.08999 * 109.51603 * 62.27057 * 15 5 4 30 30 H 1.09000 * 109.46962 * 299.97909 * 18 16 15 31 31 H 1.08999 * 109.47343 * 179.97438 * 18 16 15 32 32 H 1.09002 * 109.46686 * 59.97980 * 18 16 15 33 33 H 1.09001 * 109.47146 * 295.79253 * 20 19 2 34 34 H 1.09010 * 109.46934 * 55.79569 * 20 19 2 35 35 H 1.09000 * 109.47128 * 175.78602 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5709 -0.7360 -1.2357 6 8 4.0621 0.6052 -1.2771 7 6 4.0783 -1.4968 -2.4336 8 1 4.2868 -2.5535 -2.3536 9 6 4.2760 -0.8438 -3.6317 10 7 4.8262 -1.4788 -4.6435 11 14 3.7628 0.9426 -3.8177 12 1 4.8637 1.8247 -3.3538 13 1 3.4687 1.2270 -5.2453 14 1 2.5482 1.1962 -3.0019 15 6 4.0546 -1.4190 0.0466 16 6 3.4865 -0.6777 1.2590 17 1 3.8404 0.3531 1.2530 18 6 3.9511 -1.3687 2.5426 19 7 2.0193 -0.6917 1.1993 20 6 1.4374 -0.1106 2.4165 21 1 -0.3633 0.5142 0.8898 22 1 -0.3633 0.5135 -0.8902 23 1 -0.3634 -1.0276 0.0005 24 1 1.6658 -1.7446 -1.2577 25 1 1.6889 -0.1985 -2.1399 26 1 5.0229 0.6749 -1.1926 27 1 4.9657 -1.0193 -5.4864 28 1 5.1437 -1.3950 0.0829 29 1 3.7121 -2.4537 0.0594 30 1 3.5973 -2.3996 2.5488 31 1 3.5471 -0.8406 3.4063 32 1 5.0402 -1.3580 2.5872 33 1 1.7730 0.9210 2.5230 34 1 0.3499 -0.1335 2.3461 35 1 1.7574 -0.6882 3.2838 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260812039.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:31 Heat of formation + Delta-G solvation = -74.479503 kcal Electronic energy + Delta-G solvation = -15731.397158 eV Core-core repulsion = 13342.135897 eV Total energy + Delta-G solvation = -2389.261261 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.80838 -37.64321 -34.54030 -34.34223 -32.89624 -29.61132 -27.97397 -27.27641 -25.80030 -22.00687 -21.81391 -20.54678 -19.05654 -17.07466 -16.98042 -16.72524 -16.24920 -15.78728 -14.98787 -14.63159 -14.39421 -14.02424 -13.73240 -13.55023 -13.05718 -12.94635 -12.91035 -12.67698 -12.52288 -12.34859 -12.15203 -11.98910 -11.66761 -11.59429 -11.44968 -11.00233 -10.49641 -10.07133 -9.10733 -8.32740 -6.44135 1.45814 1.50080 1.71948 2.45371 3.01507 3.02889 3.66773 4.01274 4.13653 4.15103 4.17866 4.48239 4.50165 4.61985 4.66196 4.72690 4.77758 4.86714 4.93156 5.00362 5.03416 5.13426 5.18608 5.22953 5.33739 5.37011 5.48326 5.58226 5.69028 6.09319 6.28866 6.36920 6.62072 6.99799 7.34924 8.81006 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037978 B = 0.012275 C = 0.010669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.094804 B = 2280.486592 C = 2623.704640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.085 3.915 3 H 0.027 0.973 4 C -0.090 4.090 5 C 0.220 3.780 6 O -0.568 6.568 7 C -0.551 4.551 8 H 0.036 0.964 9 C 0.020 3.980 10 N -0.944 5.944 11 Si 1.010 2.990 12 H -0.284 1.284 13 H -0.342 1.342 14 H -0.260 1.260 15 C -0.113 4.113 16 C 0.086 3.914 17 H 0.034 0.966 18 C -0.138 4.138 19 N -0.541 5.541 20 C 0.018 3.982 21 H 0.074 0.926 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.375 0.625 27 H 0.264 0.736 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.020 0.980 34 H 0.081 0.919 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.802 4.624 14.545 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 H 0.045 0.955 4 C -0.128 4.128 5 C 0.180 3.820 6 O -0.377 6.377 7 C -0.588 4.588 8 H 0.054 0.946 9 C -0.179 4.179 10 N -0.583 5.583 11 Si 0.845 3.155 12 H -0.211 1.211 13 H -0.275 1.275 14 H -0.186 1.186 15 C -0.152 4.152 16 C -0.022 4.022 17 H 0.052 0.948 18 C -0.195 4.195 19 N -0.267 5.267 20 C -0.129 4.129 21 H 0.093 0.907 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.223 0.777 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.038 0.962 34 H 0.099 0.901 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.523 4.239 14.316 16.294 hybrid contribution 1.029 1.026 -0.872 1.695 sum -5.495 5.265 13.444 15.449 Atomic orbital electron populations 1.21899 0.93127 1.02625 1.02179 1.21556 0.95968 0.94700 0.90083 0.95497 1.21759 0.94785 0.99936 0.96295 1.19213 0.91634 0.78915 0.92212 1.86054 1.27278 1.30579 1.93771 1.21730 1.44818 0.96288 0.95990 0.94590 1.25890 0.93395 1.03572 0.95027 1.70112 1.44240 1.39806 1.04095 0.84692 0.80105 0.78856 0.71809 1.21133 1.27505 1.18565 1.22065 0.99554 0.99521 0.94028 1.21574 0.87264 0.97689 0.95722 0.94818 1.21863 1.01201 1.00912 0.95536 1.61983 1.07090 1.55145 1.02451 1.22566 1.00873 0.97128 0.92342 0.90704 0.92486 0.91814 0.91931 0.93444 0.77664 0.92724 0.92036 0.92541 0.92244 0.91043 0.91648 0.96177 0.90092 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 8.77 71.98 0.63 -3.28 16 2 C 0.09 2.96 2.31 44.94 0.10 3.06 16 3 H 0.03 1.02 7.76 -2.39 -0.02 1.00 16 4 C -0.09 -3.83 4.12 30.64 0.13 -3.71 16 5 C 0.22 9.96 0.54 -11.46 -0.01 9.96 16 6 O -0.57 -24.67 7.23 -148.98 -1.08 -25.75 16 7 C -0.55 -31.09 8.77 25.60 0.22 -30.86 16 8 H 0.04 2.26 8.06 -2.91 -0.02 2.24 16 9 C 0.02 1.15 5.46 84.66 0.46 1.61 16 10 N -0.94 -59.58 13.96 21.45 0.30 -59.28 16 11 Si 1.01 50.51 24.34 68.60 1.67 52.19 16 12 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 13 H -0.34 -17.62 7.11 99.48 0.71 -16.91 16 14 H -0.26 -12.57 5.30 99.48 0.53 -12.04 16 15 C -0.11 -4.40 4.30 30.65 0.13 -4.27 16 16 C 0.09 2.71 2.31 44.94 0.10 2.82 16 17 H 0.03 1.12 7.76 -2.39 -0.02 1.10 16 18 C -0.14 -3.37 8.76 71.98 0.63 -2.74 16 19 N -0.54 -16.80 4.58 -871.89 -3.99 -20.79 16 20 C 0.02 0.43 8.64 127.69 1.10 1.53 16 21 H 0.07 1.70 6.23 -2.38 -0.01 1.68 16 22 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 25 H 0.05 2.18 5.76 -2.39 -0.01 2.16 16 26 H 0.37 14.58 8.89 -74.06 -0.66 13.93 16 27 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 28 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.45 6.33 -2.39 -0.02 1.44 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.08 1.67 5.96 -2.38 -0.01 1.66 16 35 H 0.08 1.67 6.21 -2.39 -0.01 1.65 16 Total: -1.00 -66.09 260.03 0.63 -65.46 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.22 Total: 14.06 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 3.51 Total: -25.89 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -3.70 Total: -80.07 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -1.08 Total: -25.75 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 1.67 Total: 52.19 kcal Total: -66.09 0.63 -65.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260812039.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.018 kcal (2) G-P(sol) polarization free energy of solvation -66.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds