Wall clock time and date at job start Mon Mar 30 2020 04:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.48428 * 2 1 4 4 C 1.53095 * 109.49306 * 239.97423 * 2 1 3 5 5 C 1.53178 * 109.16887 * 182.40070 * 4 2 1 6 6 C 1.50697 * 109.61494 * 297.07121 * 5 4 2 7 7 H 1.08004 * 120.00535 * 123.50821 * 6 5 4 8 8 C 1.37880 * 119.99823 * 303.50908 * 6 5 4 9 9 N 1.31523 * 119.99869 * 173.86121 * 8 6 5 10 10 Si 1.86795 * 120.00163 * 353.85491 * 8 6 5 11 11 H 1.48506 * 109.47014 * 91.68499 * 10 8 6 12 12 H 1.48505 * 109.47146 * 211.68233 * 10 8 6 13 13 H 1.48497 * 109.46988 * 331.68366 * 10 8 6 14 14 N 1.46895 * 109.54311 * 176.84862 * 5 4 2 15 15 C 1.46906 * 110.99532 * 178.61973 * 14 5 4 16 16 C 1.46903 * 111.00155 * 302.56961 * 14 5 4 17 17 C 1.53179 * 109.03382 * 56.97749 * 5 4 2 18 18 C 1.53088 * 109.16585 * 303.02322 * 17 5 4 19 19 O 1.42898 * 109.48392 * 120.02446 * 2 1 3 20 20 H 1.08997 * 109.47140 * 299.97264 * 1 2 3 21 21 H 1.08998 * 109.47115 * 59.97512 * 1 2 3 22 22 H 1.08997 * 109.46770 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.52021 * 62.49484 * 4 2 1 24 24 H 1.09004 * 109.52060 * 302.30956 * 4 2 1 25 25 H 0.97001 * 119.99780 * 180.02562 * 9 8 6 26 26 H 1.09007 * 109.46830 * 186.35217 * 15 14 5 27 27 H 1.08992 * 109.47124 * 306.35320 * 15 14 5 28 28 H 1.09006 * 109.46842 * 66.35819 * 15 14 5 29 29 H 1.08998 * 109.47055 * 300.00641 * 16 14 5 30 30 H 1.09003 * 109.46549 * 60.00409 * 16 14 5 31 31 H 1.08999 * 109.47199 * 180.02562 * 16 14 5 32 32 H 1.09004 * 109.52174 * 62.92649 * 17 5 4 33 33 H 1.09001 * 109.52129 * 183.04930 * 17 5 4 34 34 H 1.09001 * 109.48373 * 177.59062 * 18 17 5 35 35 H 1.09005 * 109.48194 * 297.62786 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0409 -0.7222 -1.2495 5 6 3.5714 -0.7705 -1.2121 6 6 4.1230 0.6313 -1.2526 7 1 4.7829 0.9749 -0.4697 8 6 3.7851 1.4753 -2.2893 9 7 4.1668 2.7337 -2.2637 10 14 2.7856 0.8315 -3.7300 11 1 1.3401 1.0430 -3.4634 12 1 3.1727 1.5590 -4.9654 13 1 3.0494 -0.6191 -3.9065 14 7 4.0676 -1.5275 -2.3690 15 6 5.5361 -1.5660 -2.3823 16 6 3.5052 -2.8844 -2.3908 17 6 4.0179 -1.4596 0.0811 18 6 3.4308 -0.7090 1.2792 19 8 2.0066 -0.6741 1.1664 20 1 -0.3633 0.5134 0.8902 21 1 -0.3633 0.5142 -0.8897 22 1 -0.3633 -1.0277 -0.0005 23 1 1.7151 -0.1842 -2.1399 24 1 1.6447 -1.7375 -1.2710 25 1 3.9288 3.3275 -2.9929 26 1 5.8789 -2.0335 -3.3055 27 1 5.9267 -0.5502 -2.3227 28 1 5.8922 -2.1430 -1.5288 29 1 3.7909 -3.4108 -1.4801 30 1 2.4184 -2.8263 -2.4512 31 1 3.8893 -3.4231 -3.2571 32 1 3.6618 -2.4898 0.0866 33 1 5.1062 -1.4501 0.1418 34 1 3.7101 -1.2199 2.2006 35 1 3.8191 0.3094 1.2959 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261036880.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:03 Heat of formation + Delta-G solvation = -25.272558 kcal Electronic energy + Delta-G solvation = -16101.769996 eV Core-core repulsion = 13714.642508 eV Total energy + Delta-G solvation = -2387.127488 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.35788 -36.31303 -32.58081 -31.98605 -30.80599 -27.45289 -27.16943 -24.56080 -23.35832 -22.48901 -20.54216 -18.58471 -16.13772 -15.61457 -15.41856 -14.97608 -14.32568 -13.91324 -13.55270 -13.19485 -13.06011 -12.51931 -12.20808 -11.92357 -11.83379 -11.52105 -11.17943 -10.96625 -10.79328 -10.53489 -10.27038 -10.00359 -9.84838 -9.72697 -9.41728 -8.94262 -8.64500 -8.43947 -6.88705 -6.06115 -4.11965 3.42083 3.57877 3.88645 4.53084 4.63767 4.91424 5.36870 5.70650 5.72691 5.80927 5.89188 5.94909 6.00434 6.06860 6.13902 6.21130 6.26840 6.29185 6.37467 6.45238 6.48170 6.51174 6.63528 6.71582 6.89393 6.92662 6.99551 7.13835 7.63722 8.02114 8.06102 8.23247 8.55904 8.92112 9.59888 11.03191 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024086 B = 0.018569 C = 0.015021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.244686 B = 1507.567685 C = 1863.644981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.096 3.904 3 H 0.076 0.924 4 C -0.136 4.136 5 C 0.205 3.795 6 C -0.510 4.510 7 H 0.072 0.928 8 C 0.087 3.913 9 N -0.896 5.896 10 Si 0.858 3.142 11 H -0.295 1.295 12 H -0.312 1.312 13 H -0.190 1.190 14 N -0.530 5.530 15 C 0.036 3.964 16 C 0.015 3.985 17 C -0.164 4.164 18 C 0.076 3.924 19 O -0.394 6.394 20 H 0.056 0.944 21 H 0.064 0.936 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.047 0.953 25 H 0.263 0.737 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.009 0.991 29 H 0.017 0.983 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.906 -7.927 2.048 8.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.038 3.962 3 H 0.094 0.906 4 C -0.174 4.174 5 C 0.118 3.882 6 C -0.548 4.548 7 H 0.090 0.910 8 C -0.118 4.118 9 N -0.532 5.532 10 Si 0.688 3.312 11 H -0.223 1.223 12 H -0.241 1.241 13 H -0.112 1.112 14 N -0.254 5.254 15 C -0.112 4.112 16 C -0.134 4.134 17 C -0.204 4.204 18 C -0.001 4.001 19 O -0.314 6.314 20 H 0.075 0.925 21 H 0.083 0.917 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.103 0.897 28 H 0.028 0.972 29 H 0.035 0.965 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.162 -7.625 1.655 8.419 hybrid contribution 0.001 -0.428 -0.331 0.541 sum -3.160 -8.053 1.323 8.751 Atomic orbital electron populations 1.21778 0.94879 1.01698 1.01648 1.21985 0.92778 0.96897 0.84545 0.90616 1.22462 0.97952 0.98910 0.98082 1.19142 0.90939 0.93835 0.84304 1.20663 1.31069 0.92956 1.10148 0.90979 1.24962 0.94817 0.93985 0.97987 1.69952 1.46027 1.04630 1.32591 0.87515 0.78170 0.84636 0.80902 1.22346 1.24075 1.11155 1.63103 1.07187 1.11567 1.43520 1.22160 0.88734 1.02726 0.97607 1.22425 1.00295 0.91763 0.98881 1.22621 1.00576 0.98682 0.98495 1.22351 0.80886 1.00382 0.96469 1.87711 1.21382 1.78457 1.43803 0.92509 0.91702 0.92760 0.91695 0.93490 0.92775 0.93949 0.89661 0.97245 0.96462 0.92231 0.93216 0.93430 0.91855 0.91135 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.57 37.16 0.36 -2.11 16 2 C 0.10 1.99 3.04 -26.68 -0.08 1.91 16 3 H 0.08 1.78 7.38 -51.93 -0.38 1.39 16 4 C -0.14 -2.94 3.52 -26.59 -0.09 -3.03 16 5 C 0.21 4.55 0.04 -132.57 -0.01 4.55 16 6 C -0.51 -13.31 5.31 -34.44 -0.18 -13.50 16 7 H 0.07 2.06 7.31 -52.48 -0.38 1.68 16 8 C 0.09 2.40 5.41 -17.81 -0.10 2.30 16 9 N -0.90 -26.60 13.96 55.43 0.77 -25.83 16 10 Si 0.86 21.32 24.04 -169.99 -4.09 17.24 16 11 H -0.29 -7.30 6.75 56.52 0.38 -6.92 16 12 H -0.31 -8.09 7.11 56.52 0.40 -7.69 16 13 H -0.19 -4.45 5.11 56.52 0.29 -4.17 16 14 N -0.53 -11.22 1.55 -236.54 -0.37 -11.59 16 15 C 0.04 0.71 8.87 60.07 0.53 1.24 16 16 C 0.01 0.27 8.77 60.07 0.53 0.80 16 17 C -0.16 -3.29 4.17 -26.59 -0.11 -3.40 16 18 C 0.08 1.49 6.61 37.20 0.25 1.74 16 19 O -0.39 -8.10 10.41 -35.23 -0.37 -8.47 16 20 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 22 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.06 1.50 3.22 -51.93 -0.17 1.33 16 24 H 0.05 0.94 6.21 -51.93 -0.32 0.62 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.89 6.82 -51.93 -0.35 1.54 16 28 H 0.01 0.17 6.77 -51.93 -0.35 -0.18 16 29 H 0.02 0.30 6.30 -51.93 -0.33 -0.03 16 30 H 0.06 1.06 6.19 -51.93 -0.32 0.74 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.91 6.31 -51.93 -0.33 0.58 16 33 H 0.06 1.26 6.77 -51.93 -0.35 0.90 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 LS Contribution 251.62 15.07 3.79 3.79 Total: -1.00 -28.82 251.62 -4.62 -33.44 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -5.45 Total: 0.91 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 1.09 Total: -9.49 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.41 Total: -37.42 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.37 Total: -8.47 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.09 Total: 17.24 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.82 -4.62 -33.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036880.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.167 kcal (2) G-P(sol) polarization free energy of solvation -28.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds