Wall clock time and date at job start Mon Mar 30 2020 04:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.48428 * 2 1 4 4 C 1.53095 * 109.49306 * 239.97423 * 2 1 3 5 5 C 1.53178 * 109.16887 * 182.40070 * 4 2 1 6 6 C 1.50697 * 109.61494 * 297.07121 * 5 4 2 7 7 H 1.08004 * 120.00535 * 123.50821 * 6 5 4 8 8 C 1.37880 * 119.99823 * 303.50908 * 6 5 4 9 9 N 1.31523 * 119.99869 * 173.86121 * 8 6 5 10 10 Si 1.86795 * 120.00163 * 353.85491 * 8 6 5 11 11 H 1.48506 * 109.47014 * 91.68499 * 10 8 6 12 12 H 1.48505 * 109.47146 * 211.68233 * 10 8 6 13 13 H 1.48497 * 109.46988 * 331.68366 * 10 8 6 14 14 N 1.46895 * 109.54311 * 176.84862 * 5 4 2 15 15 C 1.46906 * 110.99532 * 178.61973 * 14 5 4 16 16 C 1.46903 * 111.00155 * 302.56961 * 14 5 4 17 17 C 1.53179 * 109.03382 * 56.97749 * 5 4 2 18 18 C 1.53088 * 109.16585 * 303.02322 * 17 5 4 19 19 O 1.42898 * 109.48392 * 120.02446 * 2 1 3 20 20 H 1.08997 * 109.47140 * 299.97264 * 1 2 3 21 21 H 1.08998 * 109.47115 * 59.97512 * 1 2 3 22 22 H 1.08997 * 109.46770 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.52021 * 62.49484 * 4 2 1 24 24 H 1.09004 * 109.52060 * 302.30956 * 4 2 1 25 25 H 0.97001 * 119.99780 * 180.02562 * 9 8 6 26 26 H 1.09007 * 109.46830 * 186.35217 * 15 14 5 27 27 H 1.08992 * 109.47124 * 306.35320 * 15 14 5 28 28 H 1.09006 * 109.46842 * 66.35819 * 15 14 5 29 29 H 1.08998 * 109.47055 * 300.00641 * 16 14 5 30 30 H 1.09003 * 109.46549 * 60.00409 * 16 14 5 31 31 H 1.08999 * 109.47199 * 180.02562 * 16 14 5 32 32 H 1.09004 * 109.52174 * 62.92649 * 17 5 4 33 33 H 1.09001 * 109.52129 * 183.04930 * 17 5 4 34 34 H 1.09001 * 109.48373 * 177.59062 * 18 17 5 35 35 H 1.09005 * 109.48194 * 297.62786 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0409 -0.7222 -1.2495 5 6 3.5714 -0.7705 -1.2121 6 6 4.1230 0.6313 -1.2526 7 1 4.7829 0.9749 -0.4697 8 6 3.7851 1.4753 -2.2893 9 7 4.1668 2.7337 -2.2637 10 14 2.7856 0.8315 -3.7300 11 1 1.3401 1.0430 -3.4634 12 1 3.1727 1.5590 -4.9654 13 1 3.0494 -0.6191 -3.9065 14 7 4.0676 -1.5275 -2.3690 15 6 5.5361 -1.5660 -2.3823 16 6 3.5052 -2.8844 -2.3908 17 6 4.0179 -1.4596 0.0811 18 6 3.4308 -0.7090 1.2792 19 8 2.0066 -0.6741 1.1664 20 1 -0.3633 0.5134 0.8902 21 1 -0.3633 0.5142 -0.8897 22 1 -0.3633 -1.0277 -0.0005 23 1 1.7151 -0.1842 -2.1399 24 1 1.6447 -1.7375 -1.2710 25 1 3.9288 3.3275 -2.9929 26 1 5.8789 -2.0335 -3.3055 27 1 5.9267 -0.5502 -2.3227 28 1 5.8922 -2.1430 -1.5288 29 1 3.7909 -3.4108 -1.4801 30 1 2.4184 -2.8263 -2.4512 31 1 3.8893 -3.4231 -3.2571 32 1 3.6618 -2.4898 0.0866 33 1 5.1062 -1.4501 0.1418 34 1 3.7101 -1.2199 2.2006 35 1 3.8191 0.3094 1.2959 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261036880.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:02 Heat of formation + Delta-G solvation = -44.544552 kcal Electronic energy + Delta-G solvation = -16102.605693 eV Core-core repulsion = 13714.642508 eV Total energy + Delta-G solvation = -2387.963184 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.03227 -37.94167 -34.54829 -33.62499 -32.52632 -29.03454 -28.80234 -26.35171 -25.06270 -24.07983 -22.15232 -20.45708 -18.03829 -17.25215 -17.14062 -16.74695 -15.99633 -15.57937 -15.18074 -14.92959 -14.74597 -14.22499 -14.02516 -13.42102 -13.23599 -13.16637 -12.72153 -12.56111 -12.41957 -12.20326 -12.09631 -11.77767 -11.59477 -11.45039 -11.29771 -10.73919 -10.60372 -10.27557 -8.53470 -8.21709 -6.27462 1.42134 1.55219 1.89628 2.57165 2.95731 3.09445 3.51163 4.10539 4.15226 4.19989 4.36422 4.42084 4.45328 4.62061 4.64260 4.71336 4.73117 4.79032 4.85720 4.90894 4.98438 5.07730 5.08369 5.15171 5.26254 5.30731 5.36714 5.44854 5.73882 6.14229 6.41302 6.49899 6.65226 6.86743 7.46504 8.91511 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024086 B = 0.018569 C = 0.015021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.244686 B = 1507.567685 C = 1863.644981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.093 3.907 3 H 0.035 0.965 4 C -0.135 4.135 5 C 0.203 3.797 6 C -0.490 4.490 7 H 0.031 0.969 8 C 0.035 3.965 9 N -0.948 5.948 10 Si 0.908 3.092 11 H -0.293 1.293 12 H -0.331 1.331 13 H -0.159 1.159 14 N -0.551 5.551 15 C 0.041 3.959 16 C 0.015 3.985 17 C -0.158 4.158 18 C 0.074 3.926 19 O -0.391 6.391 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.074 0.926 23 H 0.051 0.949 24 H 0.072 0.928 25 H 0.259 0.741 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.024 0.976 29 H 0.029 0.971 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.063 -11.012 1.997 11.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.035 3.965 3 H 0.053 0.947 4 C -0.173 4.173 5 C 0.115 3.885 6 C -0.528 4.528 7 H 0.049 0.951 8 C -0.164 4.164 9 N -0.588 5.588 10 Si 0.737 3.263 11 H -0.222 1.222 12 H -0.262 1.262 13 H -0.080 1.080 14 N -0.274 5.274 15 C -0.108 4.108 16 C -0.133 4.133 17 C -0.198 4.198 18 C -0.003 4.003 19 O -0.311 6.311 20 H 0.087 0.913 21 H 0.087 0.913 22 H 0.093 0.907 23 H 0.069 0.931 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -4.320 -10.746 1.621 11.695 hybrid contribution 0.446 0.512 -0.213 0.712 sum -3.874 -10.234 1.407 11.033 Atomic orbital electron populations 1.21751 0.91865 1.03288 1.02526 1.21975 0.95198 0.94702 0.84670 0.94680 1.22436 0.97160 1.00079 0.97622 1.19041 0.91461 0.91867 0.86161 1.20791 1.28857 0.95214 1.07922 0.95063 1.25660 0.96238 0.93954 1.00527 1.70092 1.48943 1.06187 1.33560 0.86813 0.76796 0.85414 0.77289 1.22170 1.26185 1.07972 1.62843 1.07943 1.13908 1.42725 1.22092 0.88104 1.01032 0.99524 1.22494 1.00497 0.89735 1.00537 1.22543 1.00520 0.99439 0.97264 1.22432 0.80533 0.99234 0.98108 1.87723 1.21685 1.78053 1.43654 0.91301 0.91323 0.90716 0.93124 0.90980 0.93250 0.91536 0.93227 0.95781 0.95240 0.91716 0.91018 0.91285 0.92053 0.87662 0.95035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 9.57 71.98 0.69 -3.68 16 2 C 0.09 3.73 3.04 30.63 0.09 3.83 16 3 H 0.04 1.69 7.38 -2.39 -0.02 1.67 16 4 C -0.14 -5.50 3.52 30.69 0.11 -5.40 16 5 C 0.20 8.68 0.04 2.90 0.00 8.68 16 6 C -0.49 -26.14 5.31 25.60 0.14 -26.01 16 7 H 0.03 1.88 7.31 -2.91 -0.02 1.86 16 8 C 0.03 1.97 5.41 84.65 0.46 2.43 16 9 N -0.95 -58.98 13.96 21.45 0.30 -58.68 16 10 Si 0.91 44.24 24.04 68.60 1.65 45.88 16 11 H -0.29 -14.05 6.75 99.48 0.67 -13.38 16 12 H -0.33 -17.09 7.11 99.48 0.71 -16.38 16 13 H -0.16 -6.94 5.11 99.48 0.51 -6.43 16 14 N -0.55 -21.65 1.55 -902.26 -1.39 -23.04 16 15 C 0.04 1.52 8.87 127.69 1.13 2.65 16 16 C 0.02 0.47 8.77 127.69 1.12 1.59 16 17 C -0.16 -5.97 4.17 30.68 0.13 -5.84 16 18 C 0.07 2.79 6.61 72.01 0.48 3.26 16 19 O -0.39 -15.29 10.41 -148.98 -1.55 -16.84 16 20 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 21 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 22 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.05 2.22 3.22 -2.38 -0.01 2.22 16 24 H 0.07 2.59 6.21 -2.39 -0.01 2.57 16 25 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 26 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 27 H 0.05 2.19 6.82 -2.39 -0.02 2.18 16 28 H 0.02 0.82 6.77 -2.38 -0.02 0.80 16 29 H 0.03 0.85 6.30 -2.39 -0.02 0.84 16 30 H 0.06 1.95 6.19 -2.39 -0.01 1.94 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.07 2.33 6.31 -2.39 -0.02 2.32 16 33 H 0.06 2.32 6.77 -2.39 -0.02 2.31 16 34 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.03 1.36 6.95 -2.38 -0.02 1.35 16 Total: -1.00 -63.36 251.62 4.17 -59.19 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.83 Total: 11.99 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: 4.34 Total: -18.49 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -1.10 Total: -81.73 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -1.55 Total: -16.84 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.65 Total: 45.88 kcal Total: -63.36 4.17 -59.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036880.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.642 kcal (2) G-P(sol) polarization free energy of solvation -63.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds