Wall clock time and date at job start Mon Mar 30 2020 04:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.48063 * 2 1 4 4 C 1.53090 * 109.47688 * 120.02385 * 2 1 3 5 5 C 1.53181 * 109.16040 * 177.57893 * 4 2 1 6 6 C 1.50701 * 109.60416 * 62.95018 * 5 4 2 7 7 H 1.07996 * 120.00391 * 355.26343 * 6 5 4 8 8 C 1.37876 * 119.99897 * 175.27007 * 6 5 4 9 9 N 1.31514 * 119.99974 * 353.33698 * 8 6 5 10 10 Si 1.86798 * 120.00160 * 173.33645 * 8 6 5 11 11 H 1.48504 * 109.46805 * 89.99971 * 10 8 6 12 12 H 1.48497 * 109.47422 * 209.99680 * 10 8 6 13 13 H 1.48496 * 109.47070 * 330.00075 * 10 8 6 14 14 N 1.46902 * 109.54142 * 183.16278 * 5 4 2 15 15 C 1.46899 * 111.00054 * 298.85730 * 14 5 4 16 16 C 1.46894 * 111.00084 * 62.81451 * 14 5 4 17 17 C 1.53172 * 109.04606 * 303.03715 * 5 4 2 18 18 C 1.53092 * 109.16318 * 56.97423 * 17 5 4 19 19 O 1.42898 * 109.41450 * 302.38899 * 18 17 5 20 20 H 1.08998 * 109.47036 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46671 * 60.00057 * 1 2 3 22 22 H 1.08992 * 109.47280 * 300.00332 * 1 2 3 23 23 H 1.08997 * 109.52372 * 297.49979 * 4 2 1 24 24 H 1.08996 * 109.52470 * 57.68350 * 4 2 1 25 25 H 0.97001 * 120.00333 * 179.97438 * 9 8 6 26 26 H 1.09001 * 109.47202 * 64.83341 * 15 14 5 27 27 H 1.09004 * 109.47075 * 184.83327 * 15 14 5 28 28 H 1.09005 * 109.46924 * 304.82617 * 15 14 5 29 29 H 1.09001 * 109.47447 * 59.99605 * 16 14 5 30 30 H 1.08998 * 109.47429 * 179.97438 * 16 14 5 31 31 H 1.09000 * 109.47091 * 299.99442 * 16 14 5 32 32 H 1.08997 * 109.52156 * 297.06567 * 17 5 4 33 33 H 1.09006 * 109.57505 * 176.91039 * 17 5 4 34 34 H 1.09001 * 109.48099 * 182.40829 * 18 17 5 35 35 H 1.08998 * 109.47991 * 62.37641 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 3.5711 -0.7711 1.2121 6 6 4.1229 0.6307 1.2530 7 1 3.4518 1.4763 1.2237 8 6 5.4846 0.8335 1.3276 9 7 6.2937 -0.1897 1.4950 10 14 6.1804 2.5617 1.1908 11 1 6.2663 3.1691 2.5432 12 1 7.5359 2.5033 0.5874 13 1 5.2919 3.3866 0.3333 14 7 4.0670 -1.5283 2.3691 15 6 3.6704 -0.8849 3.6287 16 6 3.6066 -2.9225 2.3223 17 6 4.0176 -1.4601 -0.0810 18 6 3.4307 -0.7092 -1.2791 19 8 2.0066 -0.6741 -1.1664 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5138 0.8899 23 1 1.7147 -0.1842 2.1399 24 1 1.6442 -1.7373 1.2711 25 1 7.2517 -0.0470 1.5472 26 1 2.5849 -0.9112 3.7241 27 1 4.1218 -1.4168 4.4662 28 1 4.0105 0.1508 3.6304 29 1 3.9732 -3.3959 1.4115 30 1 3.9884 -3.4605 3.1900 31 1 2.5169 -2.9457 2.3306 32 1 3.6613 -2.4902 -0.0866 33 1 5.1059 -1.4508 -0.1428 34 1 3.7100 -1.2201 -2.2006 35 1 3.8193 0.3090 -1.2957 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261036881.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:05 Heat of formation + Delta-G solvation = -35.293139 kcal Electronic energy + Delta-G solvation = -15964.935352 eV Core-core repulsion = 13577.373339 eV Total energy + Delta-G solvation = -2387.562013 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.03268 -35.98632 -32.44030 -31.88978 -30.40690 -27.30873 -26.23783 -24.96530 -23.38283 -21.69534 -20.52278 -18.52516 -15.79077 -15.41759 -15.18489 -14.71544 -13.97275 -13.63286 -13.49463 -13.09719 -12.75006 -12.33939 -11.92958 -11.84329 -11.59517 -11.04675 -10.97396 -10.90157 -10.63293 -10.57857 -10.48944 -9.99451 -9.91156 -9.52599 -9.38866 -8.76476 -8.48783 -8.28102 -6.64284 -5.82732 -4.00823 3.30205 3.38670 3.41545 4.45115 4.64498 5.19554 5.54637 5.65490 5.78982 6.02216 6.09252 6.22080 6.23885 6.33615 6.36564 6.38699 6.47926 6.48962 6.56565 6.61275 6.64027 6.81001 6.90376 6.96828 7.14582 7.15794 7.37206 7.66989 7.90327 8.15614 8.28094 8.60130 8.77127 9.11541 9.64795 11.14313 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025748 B = 0.015318 C = 0.012436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.199304 B = 1827.487194 C = 2251.033353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.099 3.901 3 H 0.062 0.938 4 C -0.168 4.168 5 C 0.244 3.756 6 C -0.528 4.528 7 H 0.054 0.946 8 C 0.086 3.914 9 N -0.833 5.833 10 Si 0.871 3.129 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.491 5.491 15 C 0.049 3.951 16 C 0.020 3.980 17 C -0.130 4.130 18 C 0.074 3.926 19 O -0.398 6.398 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.254 0.746 26 H -0.004 1.004 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.003 0.997 32 H 0.030 0.970 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.745 -1.149 -0.895 5.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.041 3.959 3 H 0.080 0.920 4 C -0.208 4.208 5 C 0.156 3.844 6 C -0.567 4.567 7 H 0.072 0.928 8 C -0.121 4.121 9 N -0.467 5.467 10 Si 0.699 3.301 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.213 5.213 15 C -0.100 4.100 16 C -0.129 4.129 17 C -0.168 4.168 18 C -0.003 4.003 19 O -0.318 6.318 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.014 0.986 27 H 0.053 0.947 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.021 0.979 32 H 0.049 0.951 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.121 -1.316 -1.016 5.384 hybrid contribution -0.203 0.992 0.314 1.060 sum -5.324 -0.324 -0.702 5.380 Atomic orbital electron populations 1.21795 0.95274 1.01708 1.01230 1.21881 0.92499 0.96032 0.85526 0.92003 1.22839 1.01811 0.98767 0.97363 1.18642 0.85750 0.93026 0.86952 1.20795 0.91518 0.90171 1.54178 0.92801 1.24912 0.97244 0.95532 0.94415 1.70172 1.02634 1.28812 1.45076 0.86951 0.78645 0.86261 0.78231 1.20848 1.21278 1.20035 1.62326 1.58079 0.98986 1.01906 1.22035 0.95018 1.01191 0.91733 1.22422 0.95978 0.93750 1.00703 1.22113 1.03108 0.96033 0.95563 1.22486 0.79749 1.00606 0.97450 1.87694 1.22477 1.78376 1.43301 0.92783 0.92798 0.91953 0.92498 0.93718 0.93624 0.98610 0.94687 0.90592 0.92334 0.93870 0.97852 0.95091 0.89084 0.91389 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.56 37.16 0.36 -1.95 16 2 C 0.10 1.98 3.03 -26.68 -0.08 1.90 16 3 H 0.06 1.32 6.78 -51.93 -0.35 0.96 16 4 C -0.17 -3.57 3.46 -26.59 -0.09 -3.66 16 5 C 0.24 5.73 0.07 -132.57 -0.01 5.72 16 6 C -0.53 -13.44 4.90 -34.44 -0.17 -13.61 16 7 H 0.05 1.39 6.76 -52.49 -0.35 1.04 16 8 C 0.09 2.24 5.12 -17.82 -0.09 2.15 16 9 N -0.83 -22.56 11.12 55.43 0.62 -21.94 16 10 Si 0.87 20.33 29.54 -169.99 -5.02 15.30 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 N -0.49 -11.56 3.68 -236.54 -0.87 -12.43 16 15 C 0.05 1.08 8.88 60.06 0.53 1.61 16 16 C 0.02 0.42 8.81 60.06 0.53 0.95 16 17 C -0.13 -2.99 4.54 -26.59 -0.12 -3.11 16 18 C 0.07 1.57 6.62 37.21 0.25 1.81 16 19 O -0.40 -8.45 10.41 -35.23 -0.37 -8.81 16 20 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.06 1.20 6.73 -51.93 -0.35 0.85 16 24 H 0.04 0.94 6.33 -51.93 -0.33 0.61 16 25 H 0.25 6.68 8.31 -40.82 -0.34 6.35 16 26 H 0.00 -0.09 6.68 -51.93 -0.35 -0.44 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 1.81 6.85 -51.93 -0.36 1.46 16 29 H 0.06 1.21 6.18 -51.93 -0.32 0.89 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.00 0.06 6.31 -51.93 -0.33 -0.26 16 32 H 0.03 0.69 6.20 -51.93 -0.32 0.37 16 33 H 0.09 2.32 6.71 -51.93 -0.35 1.97 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.06 1.29 7.38 -51.93 -0.38 0.91 16 LS Contribution 261.14 15.07 3.94 3.94 Total: -1.00 -27.11 261.14 -6.07 -33.18 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -5.46 Total: -1.03 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 1.10 Total: -8.19 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: -0.26 Total: -34.37 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.37 Total: -8.81 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.11 -6.07 -33.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036881.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.117 kcal (2) G-P(sol) polarization free energy of solvation -27.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds