Wall clock time and date at job start Mon Mar 30 2020 04:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.48063 * 2 1 4 4 C 1.53090 * 109.47688 * 120.02385 * 2 1 3 5 5 C 1.53181 * 109.16040 * 177.57893 * 4 2 1 6 6 C 1.50701 * 109.60416 * 62.95018 * 5 4 2 7 7 H 1.07996 * 120.00391 * 355.26343 * 6 5 4 8 8 C 1.37876 * 119.99897 * 175.27007 * 6 5 4 9 9 N 1.31514 * 119.99974 * 353.33698 * 8 6 5 10 10 Si 1.86798 * 120.00160 * 173.33645 * 8 6 5 11 11 H 1.48504 * 109.46805 * 89.99971 * 10 8 6 12 12 H 1.48497 * 109.47422 * 209.99680 * 10 8 6 13 13 H 1.48496 * 109.47070 * 330.00075 * 10 8 6 14 14 N 1.46902 * 109.54142 * 183.16278 * 5 4 2 15 15 C 1.46899 * 111.00054 * 298.85730 * 14 5 4 16 16 C 1.46894 * 111.00084 * 62.81451 * 14 5 4 17 17 C 1.53172 * 109.04606 * 303.03715 * 5 4 2 18 18 C 1.53092 * 109.16318 * 56.97423 * 17 5 4 19 19 O 1.42898 * 109.41450 * 302.38899 * 18 17 5 20 20 H 1.08998 * 109.47036 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46671 * 60.00057 * 1 2 3 22 22 H 1.08992 * 109.47280 * 300.00332 * 1 2 3 23 23 H 1.08997 * 109.52372 * 297.49979 * 4 2 1 24 24 H 1.08996 * 109.52470 * 57.68350 * 4 2 1 25 25 H 0.97001 * 120.00333 * 179.97438 * 9 8 6 26 26 H 1.09001 * 109.47202 * 64.83341 * 15 14 5 27 27 H 1.09004 * 109.47075 * 184.83327 * 15 14 5 28 28 H 1.09005 * 109.46924 * 304.82617 * 15 14 5 29 29 H 1.09001 * 109.47447 * 59.99605 * 16 14 5 30 30 H 1.08998 * 109.47429 * 179.97438 * 16 14 5 31 31 H 1.09000 * 109.47091 * 299.99442 * 16 14 5 32 32 H 1.08997 * 109.52156 * 297.06567 * 17 5 4 33 33 H 1.09006 * 109.57505 * 176.91039 * 17 5 4 34 34 H 1.09001 * 109.48099 * 182.40829 * 18 17 5 35 35 H 1.08998 * 109.47991 * 62.37641 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 3.5711 -0.7711 1.2121 6 6 4.1229 0.6307 1.2530 7 1 3.4518 1.4763 1.2237 8 6 5.4846 0.8335 1.3276 9 7 6.2937 -0.1897 1.4950 10 14 6.1804 2.5617 1.1908 11 1 6.2663 3.1691 2.5432 12 1 7.5359 2.5033 0.5874 13 1 5.2919 3.3866 0.3333 14 7 4.0670 -1.5283 2.3691 15 6 3.6704 -0.8849 3.6287 16 6 3.6066 -2.9225 2.3223 17 6 4.0176 -1.4601 -0.0810 18 6 3.4307 -0.7092 -1.2791 19 8 2.0066 -0.6741 -1.1664 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5138 0.8899 23 1 1.7147 -0.1842 2.1399 24 1 1.6442 -1.7373 1.2711 25 1 7.2517 -0.0470 1.5472 26 1 2.5849 -0.9112 3.7241 27 1 4.1218 -1.4168 4.4662 28 1 4.0105 0.1508 3.6304 29 1 3.9732 -3.3959 1.4115 30 1 3.9884 -3.4605 3.1900 31 1 2.5169 -2.9457 2.3306 32 1 3.6613 -2.4902 -0.0866 33 1 5.1059 -1.4508 -0.1428 34 1 3.7100 -1.2201 -2.2006 35 1 3.8193 0.3090 -1.2957 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261036881.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:05 Heat of formation + Delta-G solvation = -52.205891 kcal Electronic energy + Delta-G solvation = -15965.668744 eV Core-core repulsion = 13577.373339 eV Total energy + Delta-G solvation = -2388.295405 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.75600 -37.70719 -34.35519 -33.46999 -32.21983 -29.00117 -27.87585 -26.80935 -25.16019 -23.40815 -22.14585 -20.38597 -17.67997 -17.06373 -16.90107 -16.59569 -15.68023 -15.44169 -15.23400 -14.80200 -14.38988 -14.03526 -13.63938 -13.29780 -13.13428 -12.83693 -12.71321 -12.59574 -12.42738 -12.27642 -12.26373 -11.85666 -11.61719 -11.26956 -11.18595 -10.60472 -10.38184 -10.10882 -8.40876 -7.80113 -6.03096 1.42334 1.47680 1.53226 2.50836 3.05714 3.28757 3.75939 4.13578 4.29026 4.39007 4.51147 4.59615 4.61901 4.68283 4.75435 4.82315 4.86700 4.88050 4.89694 4.99483 5.07322 5.13981 5.25584 5.34569 5.37640 5.39023 5.56507 5.76121 5.94473 6.32101 6.54769 6.71209 6.97575 7.24202 7.64372 9.13872 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025748 B = 0.015318 C = 0.012436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.199304 B = 1827.487194 C = 2251.033353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.093 3.907 3 H 0.045 0.955 4 C -0.159 4.159 5 C 0.236 3.764 6 C -0.528 4.528 7 H 0.044 0.956 8 C 0.050 3.950 9 N -0.857 5.857 10 Si 0.921 3.079 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.274 1.274 14 N -0.519 5.519 15 C 0.057 3.943 16 C 0.026 3.974 17 C -0.124 4.124 18 C 0.078 3.922 19 O -0.400 6.400 20 H 0.060 0.940 21 H 0.066 0.934 22 H 0.079 0.921 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.250 0.750 26 H 0.009 0.991 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.014 0.986 32 H 0.036 0.964 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.971 -1.286 -0.997 7.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.035 3.965 3 H 0.063 0.937 4 C -0.199 4.199 5 C 0.148 3.852 6 C -0.567 4.567 7 H 0.062 0.938 8 C -0.155 4.155 9 N -0.492 5.492 10 Si 0.748 3.252 11 H -0.210 1.210 12 H -0.214 1.214 13 H -0.199 1.199 14 N -0.241 5.241 15 C -0.092 4.092 16 C -0.123 4.123 17 C -0.163 4.163 18 C 0.001 3.999 19 O -0.319 6.319 20 H 0.079 0.921 21 H 0.085 0.915 22 H 0.098 0.902 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.027 0.973 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.361 -1.446 -1.118 6.618 hybrid contribution 0.164 1.022 0.362 1.097 sum -6.196 -0.424 -0.756 6.257 Atomic orbital electron populations 1.21755 0.91972 1.02668 1.02814 1.22018 0.95072 0.94731 0.84644 0.93705 1.22715 1.00143 0.99070 0.97969 1.18666 0.87190 0.92111 0.87202 1.20950 0.91438 0.91070 1.53249 0.93813 1.25384 0.97637 0.97896 0.94534 1.70282 1.02432 1.30079 1.46377 0.86172 0.77847 0.83269 0.77878 1.20963 1.21425 1.19931 1.62205 1.59271 1.00353 1.02239 1.21919 0.95828 0.99727 0.91717 1.22377 0.96570 0.92189 1.01143 1.22012 1.01354 0.96592 0.96307 1.22433 0.79967 0.99658 0.97853 1.87706 1.22026 1.78410 1.43801 0.92090 0.91465 0.90223 0.92631 0.93333 0.94062 0.97259 0.93474 0.93141 0.92837 0.92458 0.96811 0.94554 0.91867 0.88934 0.94137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 9.56 71.98 0.69 -3.28 16 2 C 0.09 3.58 3.03 30.63 0.09 3.67 16 3 H 0.04 1.87 6.78 -2.39 -0.02 1.85 16 4 C -0.16 -6.51 3.46 30.68 0.11 -6.41 16 5 C 0.24 10.95 0.07 2.90 0.00 10.95 16 6 C -0.53 -26.91 4.90 25.60 0.13 -26.78 16 7 H 0.04 2.27 6.76 -2.91 -0.02 2.25 16 8 C 0.05 2.62 5.12 84.65 0.43 3.05 16 9 N -0.86 -46.77 11.12 21.45 0.24 -46.53 16 10 Si 0.92 42.02 29.54 68.60 2.03 44.04 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 14 N -0.52 -23.97 3.68 -902.29 -3.32 -27.29 16 15 C 0.06 2.44 8.88 127.69 1.13 3.57 16 16 C 0.03 1.02 8.81 127.69 1.13 2.15 16 17 C -0.12 -5.66 4.54 30.68 0.14 -5.52 16 18 C 0.08 3.23 6.62 72.01 0.48 3.70 16 19 O -0.40 -16.21 10.41 -148.98 -1.55 -17.76 16 20 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 21 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 23 H 0.06 2.26 6.73 -2.39 -0.02 2.24 16 24 H 0.05 1.93 6.33 -2.39 -0.02 1.91 16 25 H 0.25 13.32 8.31 -92.71 -0.77 12.55 16 26 H 0.01 0.36 6.68 -2.39 -0.02 0.35 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.05 2.40 6.85 -2.38 -0.02 2.38 16 29 H 0.05 2.14 6.18 -2.39 -0.01 2.13 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.01 0.51 6.31 -2.39 -0.02 0.50 16 32 H 0.04 1.58 6.20 -2.39 -0.01 1.57 16 33 H 0.06 3.24 6.71 -2.38 -0.02 3.22 16 34 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 35 H 0.04 1.81 7.38 -2.39 -0.02 1.79 16 Total: -1.00 -55.99 261.14 2.77 -53.22 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.06 Total: 9.21 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 4.32 Total: -14.89 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -3.09 Total: -73.83 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -1.55 Total: -17.76 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -55.99 2.77 -53.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036881.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.015 kcal (2) G-P(sol) polarization free energy of solvation -55.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds