Wall clock time and date at job start Mon Mar 30 2020 04:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.48443 * 2 1 4 4 C 1.53091 * 109.48205 * 120.04130 * 2 1 3 5 5 C 1.53311 * 109.19684 * 177.59281 * 4 2 1 6 6 C 1.50694 * 109.62810 * 183.17991 * 5 4 2 7 7 H 1.08006 * 119.99900 * 242.29266 * 6 5 4 8 8 C 1.37879 * 120.00271 * 62.29037 * 6 5 4 9 9 N 1.31517 * 120.00273 * 194.41170 * 8 6 5 10 10 Si 1.86798 * 119.99616 * 14.41296 * 8 6 5 11 11 H 1.48500 * 109.47353 * 84.23070 * 10 8 6 12 12 H 1.48508 * 109.46774 * 204.22813 * 10 8 6 13 13 H 1.48497 * 109.47143 * 324.22498 * 10 8 6 14 14 N 1.46896 * 109.53181 * 62.86845 * 5 4 2 15 15 C 1.46907 * 111.00202 * 58.40458 * 14 5 4 16 16 C 1.46901 * 111.00161 * 182.35902 * 14 5 4 17 17 C 1.53176 * 108.96284 * 303.05049 * 5 4 2 18 18 C 1.53096 * 109.21624 * 56.95677 * 17 5 4 19 19 O 1.42904 * 109.41081 * 302.35858 * 18 17 5 20 20 H 1.09001 * 109.46829 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46922 * 300.01799 * 1 2 3 22 22 H 1.09004 * 109.47401 * 60.02341 * 1 2 3 23 23 H 1.09006 * 109.51640 * 297.49377 * 4 2 1 24 24 H 1.08999 * 109.52416 * 57.61943 * 4 2 1 25 25 H 0.96999 * 119.99781 * 179.97438 * 9 8 6 26 26 H 1.09000 * 109.46773 * 56.50071 * 15 14 5 27 27 H 1.08997 * 109.47104 * 176.50405 * 15 14 5 28 28 H 1.08996 * 109.46704 * 296.50007 * 15 14 5 29 29 H 1.09005 * 109.47100 * 60.77506 * 16 14 5 30 30 H 1.09000 * 109.47269 * 180.77567 * 16 14 5 31 31 H 1.08999 * 109.47073 * 300.77934 * 16 14 5 32 32 H 1.08997 * 109.52651 * 297.02085 * 17 5 4 33 33 H 1.09005 * 109.52262 * 176.88745 * 17 5 4 34 34 H 1.09002 * 109.47986 * 62.33595 * 18 17 5 35 35 H 1.08995 * 109.48208 * 182.37274 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7225 1.2494 5 6 3.5725 -0.7716 1.2127 6 6 4.0826 -1.5489 2.3986 7 1 4.7072 -1.0637 3.1341 8 6 3.7519 -2.8794 2.5449 9 7 3.9475 -3.4829 3.6969 10 14 3.0262 -3.8249 1.1066 11 1 4.1227 -4.3230 0.2378 12 1 2.2381 -4.9752 1.6176 13 1 2.1407 -2.9282 0.3210 14 7 4.1087 0.5955 1.2514 15 6 3.6586 1.3036 2.4574 16 6 5.5749 0.5887 1.1613 17 6 4.0176 -1.4602 -0.0811 18 6 3.4307 -0.7092 -1.2793 19 8 2.0066 -0.6741 -1.1665 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5141 0.8898 22 1 -0.3634 0.5135 -0.8902 23 1 1.7149 -0.1846 2.1398 24 1 1.6434 -1.7373 1.2712 25 1 3.7145 -4.4188 3.7998 26 1 3.9485 0.7358 3.3415 27 1 4.1195 2.2907 2.4923 28 1 2.5741 1.4096 2.4329 29 1 5.8789 0.1327 0.2190 30 1 5.9465 1.6124 1.2061 31 1 5.9873 0.0158 1.9918 32 1 3.6612 -2.4902 -0.0868 33 1 5.1059 -1.4508 -0.1430 34 1 3.8192 0.3091 -1.2958 35 1 3.7100 -1.2200 -2.2007 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261036882.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:07 Heat of formation + Delta-G solvation = -39.478617 kcal Electronic energy + Delta-G solvation = -16102.177454 eV Core-core repulsion = 13714.433945 eV Total energy + Delta-G solvation = -2387.743509 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.05442 -37.75681 -34.69918 -33.67174 -32.79151 -29.34135 -28.10648 -26.88985 -24.97393 -23.80869 -22.21266 -20.78562 -18.35756 -17.31114 -17.10022 -16.74196 -16.03021 -15.83066 -15.17490 -14.99187 -14.53630 -14.00004 -13.86891 -13.55528 -13.10107 -13.06576 -12.99964 -12.86579 -12.59898 -12.24173 -12.21519 -11.94957 -11.66162 -11.35418 -11.24671 -10.62993 -10.43988 -10.12104 -8.87222 -8.38166 -6.37087 1.26403 1.36307 1.43273 2.26626 2.96967 3.03407 3.37691 4.12310 4.18024 4.21517 4.38839 4.47084 4.49893 4.53647 4.70941 4.75843 4.79535 4.86150 4.90014 4.97293 5.00983 5.11012 5.14216 5.19358 5.23303 5.39066 5.42628 5.51932 5.54866 6.14665 6.36127 6.45776 6.50969 6.70961 7.30906 8.78157 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024273 B = 0.018369 C = 0.014395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.290023 B = 1523.970893 C = 1944.602840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.092 3.908 3 H 0.070 0.930 4 C -0.141 4.141 5 C 0.210 3.790 6 C -0.530 4.530 7 H 0.037 0.963 8 C 0.027 3.973 9 N -0.940 5.940 10 Si 0.926 3.074 11 H -0.283 1.283 12 H -0.316 1.316 13 H -0.211 1.211 14 N -0.526 5.526 15 C 0.032 3.968 16 C 0.030 3.970 17 C -0.160 4.160 18 C 0.074 3.926 19 O -0.400 6.400 20 H 0.048 0.952 21 H 0.082 0.918 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.263 0.737 26 H 0.004 0.996 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.005 0.995 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.289 8.452 -9.005 12.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.035 3.965 3 H 0.088 0.912 4 C -0.179 4.179 5 C 0.120 3.880 6 C -0.569 4.569 7 H 0.055 0.945 8 C -0.172 4.172 9 N -0.579 5.579 10 Si 0.756 3.244 11 H -0.211 1.211 12 H -0.246 1.246 13 H -0.135 1.135 14 N -0.249 5.249 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.197 4.197 18 C -0.003 4.003 19 O -0.320 6.320 20 H 0.067 0.933 21 H 0.101 0.899 22 H 0.092 0.908 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.023 0.977 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.024 0.976 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.608 8.498 -9.448 13.209 hybrid contribution 0.679 -1.575 1.164 2.073 sum -2.929 6.923 -8.283 11.186 Atomic orbital electron populations 1.21798 0.92543 1.02266 1.03216 1.22134 0.94946 0.95360 0.84077 0.91173 1.22667 0.96701 1.00339 0.98194 1.18877 0.91649 0.86223 0.91290 1.21660 1.31393 0.95600 1.08257 0.94494 1.25683 0.95403 0.98915 0.97160 1.70104 1.50433 1.12192 1.25212 0.86579 0.79759 0.77571 0.80443 1.21089 1.24559 1.13510 1.62455 1.09363 1.15682 1.37388 1.22272 1.00983 0.97434 0.90996 1.22298 0.88267 1.00875 1.00420 1.22757 1.01255 0.98497 0.97227 1.22514 0.80482 1.00402 0.96856 1.87762 1.21821 1.78750 1.43650 0.93268 0.89896 0.90801 0.91923 0.93142 0.92795 0.97683 0.90584 0.91483 0.91357 0.90501 0.97642 0.94211 0.91106 0.91260 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.56 71.98 0.69 -3.29 16 2 C 0.09 3.19 3.11 30.63 0.10 3.28 16 3 H 0.07 2.32 7.75 -2.39 -0.02 2.30 16 4 C -0.14 -5.84 3.39 30.73 0.10 -5.74 16 5 C 0.21 9.20 0.04 2.94 0.00 9.20 16 6 C -0.53 -29.01 7.07 25.60 0.18 -28.82 16 7 H 0.04 2.27 6.10 -2.91 -0.02 2.26 16 8 C 0.03 1.56 5.35 84.65 0.45 2.01 16 9 N -0.94 -58.64 13.96 21.45 0.30 -58.34 16 10 Si 0.93 45.40 22.89 68.60 1.57 46.97 16 11 H -0.28 -13.63 7.10 99.48 0.71 -12.92 16 12 H -0.32 -15.89 7.11 99.48 0.71 -15.18 16 13 H -0.21 -9.63 4.51 99.48 0.45 -9.18 16 14 N -0.53 -20.00 3.62 -902.03 -3.27 -23.27 16 15 C 0.03 1.14 8.87 127.69 1.13 2.27 16 16 C 0.03 1.06 8.89 127.69 1.14 2.20 16 17 C -0.16 -6.59 3.78 30.68 0.12 -6.47 16 18 C 0.07 2.53 6.68 72.01 0.48 3.01 16 19 O -0.40 -14.73 10.34 -148.98 -1.54 -16.27 16 20 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 21 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 22 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 23 H 0.06 2.58 6.31 -2.38 -0.02 2.56 16 24 H 0.05 2.29 4.31 -2.39 -0.01 2.28 16 25 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 26 H 0.00 0.20 6.45 -2.39 -0.02 0.18 16 27 H 0.08 2.26 8.05 -2.39 -0.02 2.24 16 28 H 0.07 2.28 6.41 -2.39 -0.02 2.26 16 29 H 0.07 2.27 6.25 -2.38 -0.01 2.26 16 30 H 0.08 2.24 8.07 -2.39 -0.02 2.22 16 31 H 0.00 0.21 6.63 -2.39 -0.02 0.19 16 32 H 0.04 1.79 2.01 -2.39 0.00 1.78 16 33 H 0.07 2.84 6.25 -2.38 -0.01 2.82 16 34 H 0.07 2.20 7.75 -2.39 -0.02 2.18 16 35 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -64.38 249.50 2.26 -62.12 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.81 Total: 11.15 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 4.39 Total: -22.35 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -2.97 Total: -81.61 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -1.54 Total: -16.27 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.57 Total: 46.97 kcal Total: -64.38 2.26 -62.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036882.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.642 kcal (2) G-P(sol) polarization free energy of solvation -64.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds