Wall clock time and date at job start Mon Mar 30 2020 04:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.48935 * 2 1 4 4 C 1.53094 * 109.48024 * 239.96615 * 2 1 3 5 5 C 1.53170 * 109.21879 * 297.65895 * 4 2 1 6 6 C 1.50701 * 109.54191 * 62.85451 * 5 4 2 7 7 H 1.08005 * 120.00059 * 23.05232 * 6 5 4 8 8 C 1.37879 * 120.00160 * 203.04856 * 6 5 4 9 9 N 1.31513 * 119.99916 * 350.97591 * 8 6 5 10 10 Si 1.86800 * 120.00034 * 170.97072 * 8 6 5 11 11 H 1.48500 * 109.47055 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46835 * 120.00113 * 10 8 6 13 13 H 1.48503 * 109.47317 * 240.00057 * 10 8 6 14 14 N 1.46897 * 109.54518 * 183.12112 * 5 4 2 15 15 C 1.46898 * 111.00143 * 176.16447 * 14 5 4 16 16 C 1.46904 * 110.99855 * 300.11752 * 14 5 4 17 17 C 1.53181 * 109.03787 * 302.99085 * 5 4 2 18 18 C 1.53095 * 109.16290 * 56.97619 * 17 5 4 19 19 O 1.42897 * 109.41701 * 302.39221 * 18 17 5 20 20 H 1.09000 * 109.47235 * 187.54511 * 1 2 3 21 21 H 1.08995 * 109.47156 * 307.55294 * 1 2 3 22 22 H 1.08998 * 109.46547 * 67.54970 * 1 2 3 23 23 H 1.09005 * 109.51627 * 177.72153 * 4 2 1 24 24 H 1.09002 * 109.51934 * 57.59782 * 4 2 1 25 25 H 0.97001 * 120.00159 * 179.97438 * 9 8 6 26 26 H 1.09006 * 109.47042 * 62.01268 * 15 14 5 27 27 H 1.08997 * 109.47387 * 182.01623 * 15 14 5 28 28 H 1.09006 * 109.47271 * 302.01434 * 15 14 5 29 29 H 1.08996 * 109.46737 * 60.00289 * 16 14 5 30 30 H 1.08996 * 109.46892 * 179.97438 * 16 14 5 31 31 H 1.08997 * 109.47053 * 299.99696 * 16 14 5 32 32 H 1.08994 * 109.52316 * 176.88185 * 17 5 4 33 33 H 1.09002 * 109.51976 * 297.06952 * 17 5 4 34 34 H 1.09003 * 109.47947 * 62.37839 * 18 17 5 35 35 H 1.09005 * 109.47924 * 182.40723 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7224 -1.2495 5 6 1.5758 -2.1814 -1.2137 6 6 0.0701 -2.2319 -1.2533 7 1 -0.4874 -1.4025 -1.6628 8 6 -0.5957 -3.3370 -0.7669 9 7 0.0777 -4.4163 -0.4334 10 14 -2.4541 -3.3010 -0.5813 11 1 -2.9701 -1.9803 -1.0228 12 1 -3.0557 -4.3714 -1.4165 13 1 -2.8139 -3.5228 0.8423 14 7 2.1240 -2.9004 -2.3714 15 6 1.7727 -4.3259 -2.3205 16 6 1.6737 -2.2920 -3.6304 17 6 2.0764 -2.8337 0.0787 18 6 1.5645 -2.0312 1.2777 19 8 2.0067 -0.6769 1.1666 20 1 -0.3634 -1.0188 0.1349 21 1 -0.3633 0.6263 0.8147 22 1 -0.3632 0.3925 -0.9498 23 1 3.1299 -0.6875 -1.2708 24 1 1.6430 -0.2352 -2.1399 25 1 -0.3907 -5.1936 -0.0908 26 1 0.6888 -4.4346 -2.3601 27 1 2.2209 -4.8412 -3.1700 28 1 2.1477 -4.7596 -1.3934 29 1 2.0076 -1.2553 -3.6727 30 1 2.0944 -2.8434 -4.4713 31 1 0.5854 -2.3256 -3.6814 32 1 1.7036 -3.8562 0.1388 33 1 3.1664 -2.8416 0.0842 34 1 0.4750 -2.0577 1.2945 35 1 1.9530 -2.4660 2.1987 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261036883.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:09 Heat of formation + Delta-G solvation = -11.246124 kcal Electronic energy + Delta-G solvation = -16415.932503 eV Core-core repulsion = 14029.413247 eV Total energy + Delta-G solvation = -2386.519256 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.26986 -35.99903 -32.52532 -31.64371 -30.06965 -27.01844 -26.24655 -25.63058 -22.82416 -21.80412 -20.11614 -18.11088 -16.10826 -15.80827 -14.94493 -14.65077 -13.69399 -13.44228 -13.28072 -13.21548 -12.59280 -12.37103 -11.74873 -11.65823 -11.26077 -11.07416 -10.77268 -10.69495 -10.63429 -10.38408 -10.12080 -10.04324 -9.66249 -9.37738 -9.04040 -8.81784 -8.39862 -8.11173 -6.73786 -6.03417 -4.16747 3.14843 3.25899 3.29236 4.24168 4.90060 4.98395 5.56064 5.93800 6.09808 6.13417 6.30410 6.43676 6.56114 6.59030 6.62386 6.70445 6.76977 6.77878 6.88234 6.90813 6.95524 7.07879 7.31720 7.41070 7.44546 7.57738 7.65571 7.87355 8.07853 8.22175 8.44219 8.59728 8.76837 8.81671 9.38956 10.77132 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024258 B = 0.019570 C = 0.014931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.997486 B = 1430.437931 C = 1874.797495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.105 3.895 3 H 0.072 0.928 4 C -0.128 4.128 5 C 0.227 3.773 6 C -0.518 4.518 7 H 0.064 0.936 8 C 0.062 3.938 9 N -0.868 5.868 10 Si 0.881 3.119 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.281 1.281 14 N -0.546 5.546 15 C 0.053 3.947 16 C 0.036 3.964 17 C -0.159 4.159 18 C 0.074 3.926 19 O -0.401 6.401 20 H 0.122 0.878 21 H 0.025 0.975 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.260 0.740 26 H 0.059 0.941 27 H 0.004 0.996 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.035 0.965 31 H 0.028 0.972 32 H 0.144 0.856 33 H 0.024 0.976 34 H 0.057 0.943 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.484 2.660 -0.413 2.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.046 3.954 3 H 0.090 0.910 4 C -0.166 4.166 5 C 0.139 3.861 6 C -0.557 4.557 7 H 0.082 0.918 8 C -0.139 4.139 9 N -0.508 5.508 10 Si 0.709 3.291 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.207 1.207 14 N -0.270 5.270 15 C -0.095 4.095 16 C -0.113 4.113 17 C -0.197 4.197 18 C -0.002 4.002 19 O -0.321 6.321 20 H 0.140 0.860 21 H 0.044 0.956 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.022 0.978 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.161 0.839 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.081 2.595 -0.194 2.818 hybrid contribution -2.041 -0.090 -0.222 2.055 sum -0.959 2.505 -0.416 2.715 Atomic orbital electron populations 1.23169 0.96610 1.06374 0.99231 1.21845 0.93899 0.94016 0.85598 0.90963 1.22163 0.99113 0.98609 0.96719 1.18660 0.91476 0.88034 0.87912 1.21806 0.92480 1.02546 1.38912 0.91820 1.24884 0.98040 0.95120 0.95876 1.69836 1.33958 1.03259 1.43759 0.86688 0.86042 0.78309 0.78110 1.19642 1.21000 1.20657 1.62547 1.58926 1.03446 1.02084 1.22433 1.01059 0.87772 0.98235 1.22065 0.98592 0.98087 0.92531 1.22672 0.96892 1.06322 0.93805 1.22448 0.99250 0.80838 0.97668 1.87768 1.74258 1.26386 1.43649 0.86019 0.95617 0.93244 0.93353 0.92933 0.92854 0.92277 0.97752 0.91351 0.93615 0.94621 0.95351 0.83943 0.95749 0.92517 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.05 7.54 37.16 0.28 -3.77 16 2 C 0.10 2.17 3.92 -26.68 -0.10 2.07 16 3 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 4 C -0.13 -2.76 4.27 -26.59 -0.11 -2.87 16 5 C 0.23 5.26 0.42 -132.57 -0.06 5.21 16 6 C -0.52 -12.43 2.61 -34.44 -0.09 -12.52 16 7 H 0.06 1.57 5.93 -52.48 -0.31 1.26 16 8 C 0.06 1.49 3.40 -17.82 -0.06 1.43 16 9 N -0.87 -21.10 6.92 55.43 0.38 -20.72 16 10 Si 0.88 19.51 29.28 -169.99 -4.98 14.54 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 N -0.55 -12.61 4.84 -236.54 -1.14 -13.76 16 15 C 0.05 1.23 7.77 60.06 0.47 1.70 16 16 C 0.04 0.76 8.92 60.07 0.54 1.30 16 17 C -0.16 -3.75 4.04 -26.59 -0.11 -3.85 16 18 C 0.07 1.66 6.40 37.21 0.24 1.90 16 19 O -0.40 -8.96 10.60 -35.23 -0.37 -9.33 16 20 H 0.12 2.78 2.84 -51.93 -0.15 2.63 16 21 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.97 7.43 -51.93 -0.39 0.59 16 23 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.05 1.09 6.59 -51.93 -0.34 0.75 16 25 H 0.26 6.15 8.31 -40.82 -0.34 5.81 16 26 H 0.06 1.49 5.25 -51.93 -0.27 1.21 16 27 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 28 H 0.07 1.65 5.81 -51.93 -0.30 1.34 16 29 H 0.05 0.90 6.38 -51.93 -0.33 0.57 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.03 0.63 7.11 -51.93 -0.37 0.26 16 32 H 0.14 3.56 3.70 -51.98 -0.19 3.37 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 1.33 5.25 -51.93 -0.27 1.06 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 243.83 15.07 3.67 3.67 Total: -1.00 -24.67 243.83 -6.47 -31.14 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.02 Total: 3.88 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 0.99 Total: -9.42 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: -0.76 Total: -34.48 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.37 Total: -9.33 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.98 Total: 14.54 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -24.67 -6.47 -31.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036883.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.893 kcal (2) G-P(sol) polarization free energy of solvation -24.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds