Wall clock time and date at job start Mon Mar 30 2020 04:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.48935 * 2 1 4 4 C 1.53094 * 109.48024 * 239.96615 * 2 1 3 5 5 C 1.53170 * 109.21879 * 297.65895 * 4 2 1 6 6 C 1.50701 * 109.54191 * 62.85451 * 5 4 2 7 7 H 1.08005 * 120.00059 * 23.05232 * 6 5 4 8 8 C 1.37879 * 120.00160 * 203.04856 * 6 5 4 9 9 N 1.31513 * 119.99916 * 350.97591 * 8 6 5 10 10 Si 1.86800 * 120.00034 * 170.97072 * 8 6 5 11 11 H 1.48500 * 109.47055 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46835 * 120.00113 * 10 8 6 13 13 H 1.48503 * 109.47317 * 240.00057 * 10 8 6 14 14 N 1.46897 * 109.54518 * 183.12112 * 5 4 2 15 15 C 1.46898 * 111.00143 * 176.16447 * 14 5 4 16 16 C 1.46904 * 110.99855 * 300.11752 * 14 5 4 17 17 C 1.53181 * 109.03787 * 302.99085 * 5 4 2 18 18 C 1.53095 * 109.16290 * 56.97619 * 17 5 4 19 19 O 1.42897 * 109.41701 * 302.39221 * 18 17 5 20 20 H 1.09000 * 109.47235 * 187.54511 * 1 2 3 21 21 H 1.08995 * 109.47156 * 307.55294 * 1 2 3 22 22 H 1.08998 * 109.46547 * 67.54970 * 1 2 3 23 23 H 1.09005 * 109.51627 * 177.72153 * 4 2 1 24 24 H 1.09002 * 109.51934 * 57.59782 * 4 2 1 25 25 H 0.97001 * 120.00159 * 179.97438 * 9 8 6 26 26 H 1.09006 * 109.47042 * 62.01268 * 15 14 5 27 27 H 1.08997 * 109.47387 * 182.01623 * 15 14 5 28 28 H 1.09006 * 109.47271 * 302.01434 * 15 14 5 29 29 H 1.08996 * 109.46737 * 60.00289 * 16 14 5 30 30 H 1.08996 * 109.46892 * 179.97438 * 16 14 5 31 31 H 1.08997 * 109.47053 * 299.99696 * 16 14 5 32 32 H 1.08994 * 109.52316 * 176.88185 * 17 5 4 33 33 H 1.09002 * 109.51976 * 297.06952 * 17 5 4 34 34 H 1.09003 * 109.47947 * 62.37839 * 18 17 5 35 35 H 1.09005 * 109.47924 * 182.40723 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7224 -1.2495 5 6 1.5758 -2.1814 -1.2137 6 6 0.0701 -2.2319 -1.2533 7 1 -0.4874 -1.4025 -1.6628 8 6 -0.5957 -3.3370 -0.7669 9 7 0.0777 -4.4163 -0.4334 10 14 -2.4541 -3.3010 -0.5813 11 1 -2.9701 -1.9803 -1.0228 12 1 -3.0557 -4.3714 -1.4165 13 1 -2.8139 -3.5228 0.8423 14 7 2.1240 -2.9004 -2.3714 15 6 1.7727 -4.3259 -2.3205 16 6 1.6737 -2.2920 -3.6304 17 6 2.0764 -2.8337 0.0787 18 6 1.5645 -2.0312 1.2777 19 8 2.0067 -0.6769 1.1666 20 1 -0.3634 -1.0188 0.1349 21 1 -0.3633 0.6263 0.8147 22 1 -0.3632 0.3925 -0.9498 23 1 3.1299 -0.6875 -1.2708 24 1 1.6430 -0.2352 -2.1399 25 1 -0.3907 -5.1936 -0.0908 26 1 0.6888 -4.4346 -2.3601 27 1 2.2209 -4.8412 -3.1700 28 1 2.1477 -4.7596 -1.3934 29 1 2.0076 -1.2553 -3.6727 30 1 2.0944 -2.8434 -4.4713 31 1 0.5854 -2.3256 -3.6814 32 1 1.7036 -3.8562 0.1388 33 1 3.1664 -2.8416 0.0842 34 1 0.4750 -2.0577 1.2945 35 1 1.9530 -2.4660 2.1987 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261036883.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:09 Heat of formation + Delta-G solvation = -26.779470 kcal Electronic energy + Delta-G solvation = -16416.606080 eV Core-core repulsion = 14029.413247 eV Total energy + Delta-G solvation = -2387.192833 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.03023 -37.76952 -34.35612 -33.36488 -31.86926 -28.74657 -28.03413 -27.42601 -24.61791 -23.56820 -21.87199 -19.90283 -17.93054 -17.56307 -16.69563 -16.45629 -15.48166 -15.23539 -15.02408 -14.98313 -14.33275 -14.12953 -13.49824 -13.39989 -13.00871 -12.86447 -12.51639 -12.48690 -12.38374 -12.10290 -11.90561 -11.76316 -11.47238 -11.18242 -10.81281 -10.62765 -10.16841 -9.93282 -8.57619 -7.87712 -6.03181 1.37239 1.46137 1.51179 2.42158 3.12345 3.22012 3.80724 4.27568 4.41838 4.45967 4.63792 4.73860 4.80149 4.86128 4.88695 4.99557 5.05921 5.08899 5.14002 5.18979 5.24912 5.34313 5.46987 5.56516 5.63986 5.73167 5.92369 5.97679 6.22626 6.41774 6.64568 6.75945 6.95977 6.97934 7.52273 8.91780 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024258 B = 0.019570 C = 0.014931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.997486 B = 1430.437931 C = 1874.797495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.100 3.900 3 H 0.099 0.901 4 C -0.124 4.124 5 C 0.220 3.780 6 C -0.514 4.514 7 H 0.056 0.944 8 C 0.034 3.966 9 N -0.878 5.878 10 Si 0.923 3.077 11 H -0.273 1.273 12 H -0.290 1.290 13 H -0.282 1.282 14 N -0.556 5.556 15 C 0.066 3.934 16 C 0.041 3.959 17 C -0.156 4.156 18 C 0.080 3.920 19 O -0.407 6.407 20 H 0.099 0.901 21 H 0.040 0.960 22 H 0.054 0.946 23 H 0.044 0.956 24 H 0.059 0.941 25 H 0.259 0.741 26 H 0.039 0.961 27 H 0.018 0.982 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.013 0.987 32 H 0.131 0.869 33 H 0.013 0.987 34 H 0.045 0.955 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 3.568 -0.613 3.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.042 3.958 3 H 0.117 0.883 4 C -0.162 4.162 5 C 0.133 3.867 6 C -0.554 4.554 7 H 0.074 0.926 8 C -0.166 4.166 9 N -0.518 5.518 10 Si 0.751 3.249 11 H -0.198 1.198 12 H -0.216 1.216 13 H -0.208 1.208 14 N -0.280 5.280 15 C -0.082 4.082 16 C -0.108 4.108 17 C -0.194 4.194 18 C 0.003 3.997 19 O -0.327 6.327 20 H 0.118 0.882 21 H 0.059 0.941 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.148 0.852 33 H 0.031 0.969 34 H 0.064 0.936 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.087 3.509 -0.398 3.695 hybrid contribution -2.021 -0.366 -0.183 2.062 sum -0.934 3.144 -0.581 3.330 Atomic orbital electron populations 1.23032 0.96416 1.05259 1.00123 1.22046 0.94114 0.95007 0.84638 0.88274 1.22120 0.98806 0.97662 0.97612 1.18737 0.91189 0.89031 0.87787 1.21759 0.92802 1.02126 1.38687 0.92621 1.25253 1.00080 0.95147 0.96080 1.69921 1.34487 1.03365 1.44053 0.86038 0.83505 0.77757 0.77593 1.19766 1.21628 1.20839 1.62573 1.59058 1.03356 1.02965 1.22221 0.99623 0.88265 0.98103 1.22065 0.97647 0.98969 0.92112 1.22597 0.95967 1.06002 0.94819 1.22360 0.98508 0.81028 0.97788 1.87764 1.74408 1.26156 1.44342 0.88248 0.94137 0.92684 0.93764 0.92204 0.93028 0.94306 0.96328 0.92732 0.92423 0.92884 0.96871 0.85242 0.96870 0.93650 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.45 7.54 71.98 0.54 -6.91 16 2 C 0.10 3.90 3.92 30.63 0.12 4.02 16 3 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 4 C -0.12 -5.11 4.27 30.68 0.13 -4.98 16 5 C 0.22 9.99 0.42 2.90 0.00 9.99 16 6 C -0.51 -24.22 2.61 25.60 0.07 -24.15 16 7 H 0.06 2.68 5.93 -2.91 -0.02 2.67 16 8 C 0.03 1.63 3.40 84.66 0.29 1.92 16 9 N -0.88 -42.61 6.92 21.45 0.15 -42.46 16 10 Si 0.92 39.71 29.28 68.60 2.01 41.72 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 13 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 14 N -0.56 -25.00 4.84 -902.29 -4.36 -29.37 16 15 C 0.07 3.03 7.77 127.69 0.99 4.02 16 16 C 0.04 1.64 8.92 127.69 1.14 2.78 16 17 C -0.16 -7.26 4.04 30.69 0.12 -7.13 16 18 C 0.08 3.48 6.40 72.01 0.46 3.94 16 19 O -0.41 -17.40 10.60 -148.98 -1.58 -18.98 16 20 H 0.10 4.39 2.84 -2.39 -0.01 4.39 16 21 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.05 2.04 7.43 -2.39 -0.02 2.02 16 23 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 24 H 0.06 2.36 6.59 -2.39 -0.02 2.34 16 25 H 0.26 12.25 8.31 -92.71 -0.77 11.48 16 26 H 0.04 1.93 5.25 -2.38 -0.01 1.92 16 27 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 2.62 5.81 -2.38 -0.01 2.61 16 29 H 0.06 2.14 6.38 -2.39 -0.02 2.13 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.01 0.55 7.11 -2.39 -0.02 0.54 16 32 H 0.13 6.47 3.70 -2.48 -0.01 6.47 16 33 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.05 2.09 5.25 -2.39 -0.01 2.08 16 35 H 0.08 3.06 8.14 -2.38 -0.02 3.04 16 Total: -1.00 -49.67 243.83 1.16 -48.51 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 1.08 Total: 17.08 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 3.87 Total: -16.50 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -4.22 Total: -71.83 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -1.58 Total: -18.98 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.01 Total: 41.72 kcal Total: -49.67 1.16 -48.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036883.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.729 kcal (2) G-P(sol) polarization free energy of solvation -49.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds