Wall clock time and date at job start Mon Mar 30 2020 04:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46190 * 2 1 4 4 C 1.53038 * 109.46014 * 119.97742 * 2 1 3 5 5 C 1.53113 * 109.27795 * 60.82466 * 4 2 1 6 6 O 1.42906 * 109.52340 * 177.56096 * 5 4 2 7 7 C 1.42894 * 114.00137 * 150.12754 * 6 5 4 8 8 C 1.50706 * 109.47263 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99758 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00102 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00217 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99766 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47057 * 179.97438 * 12 10 8 14 14 H 1.48500 * 109.47389 * 300.00068 * 12 10 8 15 15 H 1.48504 * 109.47102 * 60.00417 * 12 10 8 16 16 C 1.53121 * 109.21649 * 57.62463 * 5 4 2 17 17 C 1.53047 * 109.27210 * 302.44091 * 16 5 4 18 18 H 1.08996 * 109.40592 * 299.06547 * 17 16 5 19 19 C 1.52997 * 109.45162 * 179.12454 * 17 16 5 20 20 N 1.46844 * 109.45538 * 240.02223 * 2 1 3 21 21 H 1.09000 * 109.47126 * 300.02482 * 1 2 3 22 22 H 1.09001 * 109.47117 * 60.02340 * 1 2 3 23 23 H 1.09000 * 109.47524 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.50458 * 300.88437 * 4 2 1 25 25 H 1.08997 * 109.53636 * 180.79017 * 4 2 1 26 26 H 1.09001 * 109.52572 * 297.68335 * 5 4 2 27 27 H 1.09001 * 109.47678 * 60.00187 * 7 6 5 28 28 H 1.09006 * 109.47375 * 299.99854 * 7 6 5 29 29 H 0.97001 * 119.99646 * 359.97438 * 11 10 8 30 30 H 1.08999 * 109.49874 * 62.31478 * 16 5 4 31 31 H 1.08997 * 109.50524 * 182.43655 * 16 5 4 32 32 H 1.08998 * 109.47121 * 299.88541 * 19 17 16 33 33 H 1.08994 * 109.47235 * 59.89158 * 19 17 16 34 34 H 1.09003 * 109.46507 * 179.88532 * 19 17 16 35 35 H 1.00897 * 111.00427 * 177.63552 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 1.5440 -2.1695 1.2356 6 8 2.0639 -2.8635 2.3715 7 6 1.2184 -3.9119 2.8491 8 6 1.8616 -4.5721 4.0414 9 1 2.8200 -4.2254 4.3989 10 6 1.2262 -5.6179 4.6765 11 7 0.0589 -6.0398 4.2415 12 14 2.0238 -6.4367 6.1539 13 1 1.1446 -7.5252 6.6512 14 1 3.3377 -7.0034 5.7565 15 1 2.2229 -5.4318 7.2291 16 6 2.0251 -2.8542 -0.0467 17 6 1.5169 -2.0705 -1.2591 18 1 0.4270 -2.0606 -1.2531 19 6 2.0137 -2.7389 -2.5426 20 7 2.0191 -0.6918 -1.1994 21 1 -0.3633 0.5142 0.8898 22 1 -0.3633 0.5135 -0.8902 23 1 -0.3634 -1.0276 0.0005 24 1 1.6638 -0.2164 2.1399 25 1 3.1297 -0.7095 1.2583 26 1 0.4545 -2.1820 1.2684 27 1 1.0734 -4.6498 2.0601 28 1 0.2535 -3.4965 3.1400 29 1 -0.3551 -5.6148 3.4741 30 1 3.1148 -2.8772 -0.0600 31 1 1.6385 -3.8727 -0.0825 32 1 3.1036 -2.7485 -2.5488 33 1 1.6410 -3.7622 -2.5870 34 1 1.6502 -2.1820 -3.4062 35 1 3.0270 -0.6719 -1.2426 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261102555.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:50 Heat of formation + Delta-G solvation = -70.442128 kcal Electronic energy + Delta-G solvation = -14849.914127 eV Core-core repulsion = 12460.827939 eV Total energy + Delta-G solvation = -2389.086188 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.58480 -36.40380 -33.17646 -32.98907 -30.36381 -28.21053 -26.64263 -26.33592 -22.71587 -21.94652 -21.31272 -19.19435 -17.04597 -16.12682 -15.63698 -15.12825 -14.52658 -14.06569 -13.77540 -13.65328 -13.15864 -12.91248 -12.43310 -12.28908 -12.06881 -11.65999 -11.54398 -11.42091 -11.29555 -10.86922 -10.81129 -10.61930 -10.45664 -10.11615 -9.76944 -8.85580 -8.69288 -8.34193 -8.24328 -6.49280 -4.18088 3.41083 3.43798 3.62719 4.16873 4.40635 4.61260 4.92878 4.97425 5.09907 5.28623 5.30220 5.35525 5.43631 5.54619 5.66578 5.68323 5.72537 5.89547 6.00773 6.05411 6.10920 6.18419 6.23217 6.24609 6.41742 6.51101 6.75917 7.08274 7.12623 7.41406 7.87555 8.15815 8.61061 8.78333 9.52717 10.90831 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.047542 B = 0.006685 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.807980 B = 4187.210766 C = 4386.286599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.087 3.913 3 H 0.084 0.916 4 C -0.148 4.148 5 C 0.088 3.912 6 O -0.382 6.382 7 C 0.188 3.812 8 C -0.598 4.598 9 H 0.060 0.940 10 C 0.017 3.983 11 N -0.910 5.910 12 Si 1.079 2.921 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.286 1.286 16 C -0.171 4.171 17 C 0.080 3.920 18 H 0.083 0.917 19 C -0.142 4.142 20 N -0.677 5.677 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.052 0.948 27 H -0.006 1.006 28 H -0.006 1.006 29 H 0.267 0.733 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.161 9.633 -10.495 14.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 H 0.102 0.898 4 C -0.187 4.187 5 C 0.029 3.971 6 O -0.301 6.301 7 C 0.113 3.887 8 C -0.636 4.636 9 H 0.078 0.922 10 C -0.186 4.186 11 N -0.546 5.546 12 Si 0.906 3.094 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.212 1.212 16 C -0.211 4.211 17 C -0.029 4.029 18 H 0.101 0.899 19 C -0.200 4.200 20 N -0.307 5.307 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.012 0.988 28 H 0.011 0.989 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.624 8.729 -9.699 13.149 hybrid contribution 0.497 0.650 -0.538 0.979 sum 2.121 9.379 -10.237 14.045 Atomic orbital electron populations 1.21943 0.94653 1.02383 1.01767 1.21521 0.95878 0.97436 0.87483 0.89821 1.22350 1.01518 0.95528 0.99302 1.21903 0.96963 0.91336 0.86920 1.87919 1.47833 1.49833 1.44530 1.20296 0.89822 0.84497 0.94051 1.21913 1.08275 1.19224 1.14191 0.92213 1.25950 0.95546 0.94877 1.02239 1.70806 1.15847 1.42247 1.25705 0.83407 0.75222 0.76161 0.74634 1.20562 1.21195 1.21186 1.22817 1.01851 1.00682 0.95707 1.21592 1.00255 0.87181 0.93919 0.89931 1.21779 1.01110 1.00136 0.96959 1.60798 1.15092 1.15663 1.39159 0.92215 0.92079 0.92227 0.91075 0.91507 0.93033 0.98812 0.98873 0.92342 0.91551 0.91369 0.92836 0.92172 0.92065 0.84327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.59 37.16 0.32 -1.51 16 2 C 0.09 1.09 3.69 -67.72 -0.25 0.84 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.15 -2.30 5.25 -26.65 -0.14 -2.44 16 5 C 0.09 1.67 2.37 -26.61 -0.06 1.60 16 6 O -0.38 -9.52 9.98 -35.23 -0.35 -9.87 16 7 C 0.19 5.24 4.81 36.01 0.17 5.41 16 8 C -0.60 -18.15 9.43 -34.44 -0.32 -18.47 16 9 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 10 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 11 N -0.91 -28.21 13.65 55.43 0.76 -27.45 16 12 Si 1.08 25.72 29.90 -169.99 -5.08 20.64 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 16 C -0.17 -2.86 4.98 -26.64 -0.13 -2.99 16 17 C 0.08 1.07 2.73 -67.72 -0.19 0.89 16 18 H 0.08 1.13 6.19 -51.93 -0.32 0.81 16 19 C -0.14 -1.62 9.47 37.16 0.35 -1.27 16 20 N -0.68 -8.36 6.31 -99.77 -0.63 -8.98 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.80 4.80 -51.93 -0.25 0.55 16 24 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.05 1.00 6.21 -51.93 -0.32 0.68 16 27 H -0.01 -0.16 7.81 -51.93 -0.41 -0.57 16 28 H -0.01 -0.18 7.95 -51.93 -0.41 -0.59 16 29 H 0.27 8.21 7.22 -40.82 -0.29 7.92 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 1.23 7.95 -51.93 -0.41 0.82 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.34 3.90 8.79 -39.29 -0.35 3.56 16 LS Contribution 275.95 15.07 4.16 4.16 Total: -1.00 -31.85 275.95 -7.27 -39.13 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.78 Total: -0.09 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -0.35 Total: -17.53 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.13 Total: -36.43 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.35 Total: -9.87 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.08 Total: 20.64 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.85 -7.27 -39.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261102555.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.317 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds