Wall clock time and date at job start Mon Mar 30 2020 04:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46190 * 2 1 4 4 C 1.53038 * 109.46014 * 119.97742 * 2 1 3 5 5 C 1.53113 * 109.27795 * 60.82466 * 4 2 1 6 6 O 1.42906 * 109.52340 * 177.56096 * 5 4 2 7 7 C 1.42894 * 114.00137 * 150.12754 * 6 5 4 8 8 C 1.50706 * 109.47263 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99758 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00102 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00217 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99766 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47057 * 179.97438 * 12 10 8 14 14 H 1.48500 * 109.47389 * 300.00068 * 12 10 8 15 15 H 1.48504 * 109.47102 * 60.00417 * 12 10 8 16 16 C 1.53121 * 109.21649 * 57.62463 * 5 4 2 17 17 C 1.53047 * 109.27210 * 302.44091 * 16 5 4 18 18 H 1.08996 * 109.40592 * 299.06547 * 17 16 5 19 19 C 1.52997 * 109.45162 * 179.12454 * 17 16 5 20 20 N 1.46844 * 109.45538 * 240.02223 * 2 1 3 21 21 H 1.09000 * 109.47126 * 300.02482 * 1 2 3 22 22 H 1.09001 * 109.47117 * 60.02340 * 1 2 3 23 23 H 1.09000 * 109.47524 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.50458 * 300.88437 * 4 2 1 25 25 H 1.08997 * 109.53636 * 180.79017 * 4 2 1 26 26 H 1.09001 * 109.52572 * 297.68335 * 5 4 2 27 27 H 1.09001 * 109.47678 * 60.00187 * 7 6 5 28 28 H 1.09006 * 109.47375 * 299.99854 * 7 6 5 29 29 H 0.97001 * 119.99646 * 359.97438 * 11 10 8 30 30 H 1.08999 * 109.49874 * 62.31478 * 16 5 4 31 31 H 1.08997 * 109.50524 * 182.43655 * 16 5 4 32 32 H 1.08998 * 109.47121 * 299.88541 * 19 17 16 33 33 H 1.08994 * 109.47235 * 59.89158 * 19 17 16 34 34 H 1.09003 * 109.46507 * 179.88532 * 19 17 16 35 35 H 1.00897 * 111.00427 * 177.63552 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 1.5440 -2.1695 1.2356 6 8 2.0639 -2.8635 2.3715 7 6 1.2184 -3.9119 2.8491 8 6 1.8616 -4.5721 4.0414 9 1 2.8200 -4.2254 4.3989 10 6 1.2262 -5.6179 4.6765 11 7 0.0589 -6.0398 4.2415 12 14 2.0238 -6.4367 6.1539 13 1 1.1446 -7.5252 6.6512 14 1 3.3377 -7.0034 5.7565 15 1 2.2229 -5.4318 7.2291 16 6 2.0251 -2.8542 -0.0467 17 6 1.5169 -2.0705 -1.2591 18 1 0.4270 -2.0606 -1.2531 19 6 2.0137 -2.7389 -2.5426 20 7 2.0191 -0.6918 -1.1994 21 1 -0.3633 0.5142 0.8898 22 1 -0.3633 0.5135 -0.8902 23 1 -0.3634 -1.0276 0.0005 24 1 1.6638 -0.2164 2.1399 25 1 3.1297 -0.7095 1.2583 26 1 0.4545 -2.1820 1.2684 27 1 1.0734 -4.6498 2.0601 28 1 0.2535 -3.4965 3.1400 29 1 -0.3551 -5.6148 3.4741 30 1 3.1148 -2.8772 -0.0600 31 1 1.6385 -3.8727 -0.0825 32 1 3.1036 -2.7485 -2.5488 33 1 1.6410 -3.7622 -2.5870 34 1 1.6502 -2.1820 -3.4062 35 1 3.0270 -0.6719 -1.2426 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261102555.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:49 Heat of formation + Delta-G solvation = -92.816968 kcal Electronic energy + Delta-G solvation = -14850.884373 eV Core-core repulsion = 12460.827939 eV Total energy + Delta-G solvation = -2390.056433 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.89111 -38.19440 -35.29574 -34.20467 -31.86258 -29.29311 -28.63316 -27.63841 -24.90540 -23.35518 -22.53535 -20.39537 -19.24078 -17.78486 -17.05300 -16.25758 -16.20938 -15.71454 -15.36329 -15.17575 -14.80243 -14.40420 -14.01013 -13.67619 -13.41907 -12.98484 -12.87203 -12.81048 -12.60593 -12.51433 -12.26025 -12.01385 -11.93516 -11.82996 -11.15935 -10.92312 -10.85482 -10.33502 -9.48483 -8.89934 -6.61843 1.49211 1.58203 1.79822 2.44642 2.85804 2.97230 3.21445 3.67075 3.72418 3.91323 4.02985 4.15250 4.19427 4.36142 4.42891 4.48297 4.52327 4.65479 4.74432 4.78385 4.79386 4.95204 4.99890 5.03550 5.12239 5.17554 5.26677 5.32000 5.61929 5.85651 6.01036 6.25673 6.43014 6.60517 7.19803 8.50626 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.047542 B = 0.006685 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.807980 B = 4187.210766 C = 4386.286599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.094 3.906 3 H 0.112 0.888 4 C -0.141 4.141 5 C 0.074 3.926 6 O -0.402 6.402 7 C 0.202 3.798 8 C -0.628 4.628 9 H 0.053 0.947 10 C -0.028 4.028 11 N -0.925 5.925 12 Si 1.129 2.871 13 H -0.274 1.274 14 H -0.266 1.266 15 H -0.266 1.266 16 C -0.164 4.164 17 C 0.089 3.911 18 H 0.079 0.921 19 C -0.137 4.137 20 N -0.667 5.667 21 H 0.064 0.936 22 H 0.076 0.924 23 H 0.040 0.960 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.043 0.957 27 H -0.021 1.021 28 H -0.022 1.022 29 H 0.255 0.745 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.989 10.536 -10.971 15.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 H 0.129 0.871 4 C -0.180 4.180 5 C 0.016 3.984 6 O -0.322 6.322 7 C 0.127 3.873 8 C -0.666 4.666 9 H 0.071 0.929 10 C -0.225 4.225 11 N -0.561 5.561 12 Si 0.947 3.053 13 H -0.199 1.199 14 H -0.191 1.191 15 H -0.191 1.191 16 C -0.204 4.204 17 C -0.022 4.022 18 H 0.097 0.903 19 C -0.195 4.195 20 N -0.297 5.297 21 H 0.083 0.917 22 H 0.095 0.905 23 H 0.059 0.941 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.061 0.939 27 H -0.003 1.003 28 H -0.005 1.005 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.456 9.667 -10.215 14.277 hybrid contribution 0.218 0.432 -0.451 0.661 sum 2.674 10.099 -10.666 14.930 Atomic orbital electron populations 1.21945 0.94385 1.01520 1.02858 1.21585 0.96092 0.98228 0.85733 0.87054 1.22383 1.01515 0.93056 1.01069 1.22326 0.96773 0.93236 0.86028 1.87859 1.47908 1.49369 1.47022 1.19918 0.89339 0.84887 0.93168 1.22286 1.08460 1.20329 1.15488 0.92874 1.27681 0.95127 0.95084 1.04650 1.70933 1.16818 1.42658 1.25733 0.82823 0.75128 0.75865 0.71496 1.19852 1.19142 1.19099 1.22782 1.01521 0.99841 0.96242 1.21540 1.00071 0.87404 0.93139 0.90260 1.21742 1.01546 1.00065 0.96130 1.60828 1.15780 1.14540 1.38547 0.91699 0.90458 0.94058 0.91532 0.91422 0.93878 1.00290 1.00478 0.93633 0.91792 0.93640 0.92154 0.92313 0.90518 0.83373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.59 71.98 0.62 -2.78 16 2 C 0.09 2.14 3.69 44.94 0.17 2.31 16 3 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.14 -4.28 5.25 30.64 0.16 -4.11 16 5 C 0.07 2.88 2.37 30.67 0.07 2.95 16 6 O -0.40 -20.66 9.98 -148.98 -1.49 -22.14 16 7 C 0.20 11.72 4.81 71.24 0.34 12.07 16 8 C -0.63 -38.93 9.43 25.60 0.24 -38.69 16 9 H 0.05 3.29 7.81 -2.91 -0.02 3.26 16 10 C -0.03 -1.66 5.46 84.65 0.46 -1.20 16 11 N -0.93 -58.18 13.65 21.45 0.29 -57.89 16 12 Si 1.13 50.97 29.90 68.60 2.05 53.02 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 14 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 15 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 16 C -0.16 -5.54 4.98 30.65 0.15 -5.38 16 17 C 0.09 2.25 2.73 44.94 0.12 2.38 16 18 H 0.08 2.10 6.19 -2.39 -0.01 2.09 16 19 C -0.14 -2.86 9.47 71.98 0.68 -2.18 16 20 N -0.67 -14.78 6.31 -469.57 -2.96 -17.74 16 21 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.04 1.08 4.80 -2.39 -0.01 1.07 16 24 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.04 1.74 6.21 -2.39 -0.01 1.72 16 27 H -0.02 -1.22 7.81 -2.39 -0.02 -1.24 16 28 H -0.02 -1.34 7.95 -2.38 -0.02 -1.36 16 29 H 0.25 16.21 7.22 -92.71 -0.67 15.54 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.04 1.71 7.95 -2.39 -0.02 1.69 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.35 7.00 8.79 -89.70 -0.79 6.21 16 Total: -1.00 -69.02 275.95 1.28 -67.74 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.37 Total: 11.66 kcal Atomic # 6 Polarization: -37.66 SS G_CDS: 3.02 Total: -34.64 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -2.67 Total: -75.63 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -1.49 Total: -22.14 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.05 Total: 53.02 kcal Total: -69.02 1.28 -67.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261102555.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.079 kcal (2) G-P(sol) polarization free energy of solvation -69.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds