Wall clock time and date at job start Mon Mar 30 2020 04:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.45159 * 2 1 4 4 C 1.53036 * 109.46284 * 240.02727 * 2 1 3 5 5 C 1.53122 * 109.27453 * 180.80150 * 4 2 1 6 6 O 1.42902 * 109.52107 * 177.55912 * 5 4 2 7 7 C 1.42898 * 114.00186 * 149.99829 * 6 5 4 8 8 C 1.50703 * 109.47171 * 180.02562 * 7 6 5 9 9 H 1.07996 * 119.99751 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00001 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00094 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99955 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47116 * 59.99536 * 12 10 8 14 14 H 1.48500 * 109.46585 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46730 * 299.99515 * 12 10 8 16 16 C 1.53111 * 109.16321 * 57.65644 * 5 4 2 17 17 C 1.53036 * 109.27779 * 302.34175 * 16 5 4 18 18 H 1.09003 * 109.46545 * 179.18966 * 17 16 5 19 19 C 1.52998 * 109.46440 * 299.16144 * 17 16 5 20 20 N 1.46843 * 109.46401 * 119.96814 * 2 1 3 21 21 H 1.09002 * 109.46931 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47104 * 299.96868 * 1 2 3 23 23 H 1.08998 * 109.47282 * 59.97836 * 1 2 3 24 24 H 1.08998 * 109.50262 * 60.85982 * 4 2 1 25 25 H 1.08995 * 109.53413 * 300.75879 * 4 2 1 26 26 H 1.09000 * 109.52169 * 297.68160 * 5 4 2 27 27 H 1.09002 * 109.47259 * 300.00293 * 7 6 5 28 28 H 1.09001 * 109.47074 * 60.00315 * 7 6 5 29 29 H 0.97000 * 120.00333 * 179.97438 * 11 10 8 30 30 H 1.09007 * 109.50480 * 62.28430 * 16 5 4 31 31 H 1.09001 * 109.50620 * 182.40322 * 16 5 4 32 32 H 1.08996 * 109.47417 * 180.02562 * 19 17 16 33 33 H 1.08991 * 109.47269 * 300.05537 * 19 17 16 34 34 H 1.09008 * 109.46570 * 60.05157 * 19 17 16 35 35 H 1.00899 * 111.00593 * 305.85935 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5710 -0.7359 -1.2355 6 8 4.0522 -1.4573 -2.3714 7 6 5.3210 -1.0075 -2.8508 8 6 5.7287 -1.8333 -4.0437 9 1 5.0832 -2.6222 -4.4003 10 6 6.9257 -1.5814 -4.6798 11 7 7.7115 -0.6202 -4.2459 12 14 7.4308 -2.6045 -6.1589 13 1 6.4158 -2.4568 -7.2328 14 1 8.7494 -2.1371 -6.6570 15 1 7.5284 -4.0323 -5.7630 16 6 4.0549 -1.4186 0.0467 17 6 3.4865 -0.6775 1.2591 18 1 3.8175 -1.1697 2.1736 19 6 3.9832 0.7696 1.2508 20 7 2.0193 -0.6916 1.1994 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5134 0.8903 23 1 -0.3634 0.5142 -0.8898 24 1 1.6894 -0.1982 -2.1399 25 1 1.6660 -1.7446 -1.2582 26 1 3.9456 0.2872 -1.2683 27 1 5.2486 0.0403 -3.1423 28 1 6.0660 -1.1148 -2.0625 29 1 8.5539 -0.4433 -4.6931 30 1 3.7126 -2.4534 0.0595 31 1 5.1440 -1.3944 0.0832 32 1 3.5789 1.2975 2.1145 33 1 5.0721 0.7803 1.2951 34 1 3.6519 1.2622 0.3366 35 1 1.6196 -0.2924 2.0354 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261102557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:52 Heat of formation + Delta-G solvation = -65.100753 kcal Electronic energy + Delta-G solvation = -14791.954334 eV Core-core repulsion = 12403.099766 eV Total energy + Delta-G solvation = -2388.854568 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.35963 -36.23787 -33.01973 -32.76102 -30.65054 -27.89946 -26.93685 -26.35745 -22.55635 -22.10365 -21.12952 -18.61110 -16.58241 -16.16702 -15.55605 -15.17530 -14.49896 -14.12144 -13.93886 -13.58430 -12.96613 -12.71628 -12.43331 -12.32096 -12.00038 -11.50265 -11.43675 -11.33085 -11.00702 -10.89790 -10.71105 -10.54282 -10.25551 -10.19223 -9.69010 -9.08677 -8.75412 -8.32959 -8.10029 -6.09531 -4.11212 3.33361 3.35701 3.39909 4.21974 4.34976 4.73162 4.99194 5.05678 5.17262 5.26687 5.36017 5.40359 5.57654 5.64032 5.67643 5.77186 5.81973 5.93476 5.98341 6.17644 6.17985 6.26862 6.36181 6.45013 6.63473 6.73197 7.14664 7.18968 7.45627 7.49168 7.81579 8.18159 8.62798 9.02872 9.53711 11.01935 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.051550 B = 0.006584 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.032606 B = 4251.691087 C = 4536.728032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.082 3.918 3 H 0.041 0.959 4 C -0.107 4.107 5 C 0.089 3.911 6 O -0.389 6.389 7 C 0.197 3.803 8 C -0.515 4.515 9 H 0.066 0.934 10 C 0.056 3.944 11 N -0.900 5.900 12 Si 0.908 3.092 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.274 1.274 16 C -0.132 4.132 17 C 0.087 3.913 18 H 0.080 0.920 19 C -0.191 4.191 20 N -0.679 5.679 21 H 0.064 0.936 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.048 0.952 27 H 0.003 0.997 28 H 0.004 0.996 29 H 0.264 0.736 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.137 2.834 10.560 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 H 0.059 0.941 4 C -0.145 4.145 5 C 0.030 3.970 6 O -0.309 6.309 7 C 0.122 3.878 8 C -0.553 4.553 9 H 0.084 0.916 10 C -0.145 4.145 11 N -0.539 5.539 12 Si 0.735 3.265 13 H -0.200 1.200 14 H -0.212 1.212 15 H -0.200 1.200 16 C -0.170 4.170 17 C -0.023 4.023 18 H 0.098 0.902 19 C -0.250 4.250 20 N -0.310 5.310 21 H 0.083 0.917 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.066 0.934 27 H 0.021 0.979 28 H 0.022 0.978 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.092 2.144 10.132 14.460 hybrid contribution 0.830 0.776 -0.360 1.192 sum -9.261 2.920 9.772 13.776 Atomic orbital electron populations 1.21806 0.94490 1.02532 1.01312 1.21472 0.94805 0.95615 0.90848 0.94118 1.21669 0.95033 1.01803 0.96020 1.21886 0.93343 0.94748 0.87007 1.87892 1.39255 1.59237 1.44468 1.20206 0.79150 0.94592 0.93831 1.21045 1.04170 1.17737 1.12398 0.91602 1.24948 0.95994 0.95602 0.97929 1.69955 1.11904 1.30761 1.41261 0.86397 0.77582 0.80334 0.82181 1.20012 1.21159 1.19988 1.22083 1.00453 1.00633 0.93824 1.21508 0.87126 0.94501 0.99119 0.90170 1.22599 1.02426 0.98284 1.01668 1.60541 1.06907 1.59114 1.04456 0.91741 0.93086 0.92116 0.91420 0.90665 0.93434 0.97943 0.97786 0.92630 0.90740 0.91377 0.93185 0.91799 0.91892 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.43 37.16 0.35 -1.17 16 2 C 0.08 1.07 2.74 -67.73 -0.19 0.88 16 3 H 0.04 0.53 6.19 -51.93 -0.32 0.21 16 4 C -0.11 -1.75 5.03 -26.65 -0.13 -1.89 16 5 C 0.09 1.73 2.37 -26.61 -0.06 1.67 16 6 O -0.39 -9.69 9.98 -35.23 -0.35 -10.04 16 7 C 0.20 5.50 5.50 36.01 0.20 5.70 16 8 C -0.52 -15.45 9.43 -34.44 -0.32 -15.78 16 9 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 11 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 12 Si 0.91 22.09 29.54 -169.99 -5.02 17.07 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 16 C -0.13 -2.28 5.24 -26.66 -0.14 -2.42 16 17 C 0.09 1.18 3.68 -67.72 -0.25 0.93 16 18 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 19 C -0.19 -2.43 8.59 37.16 0.32 -2.11 16 20 N -0.68 -8.55 6.31 -99.77 -0.63 -9.18 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.05 0.94 6.21 -51.93 -0.32 0.62 16 27 H 0.00 0.08 8.09 -51.93 -0.42 -0.34 16 28 H 0.00 0.12 7.96 -51.93 -0.41 -0.29 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.07 1.25 7.96 -51.93 -0.41 0.83 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.87 4.80 -51.92 -0.25 0.62 16 35 H 0.34 3.46 8.79 -39.29 -0.35 3.12 16 LS Contribution 277.29 15.07 4.18 4.18 Total: -1.00 -31.02 277.29 -7.25 -38.26 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.83 Total: -1.19 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -0.33 Total: -12.64 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.11 Total: -35.64 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.35 Total: -10.04 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.02 -7.25 -38.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261102557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.837 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds