Wall clock time and date at job start Mon Mar 30 2020 04:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.45159 * 2 1 4 4 C 1.53036 * 109.46284 * 240.02727 * 2 1 3 5 5 C 1.53122 * 109.27453 * 180.80150 * 4 2 1 6 6 O 1.42902 * 109.52107 * 177.55912 * 5 4 2 7 7 C 1.42898 * 114.00186 * 149.99829 * 6 5 4 8 8 C 1.50703 * 109.47171 * 180.02562 * 7 6 5 9 9 H 1.07996 * 119.99751 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00001 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00094 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99955 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47116 * 59.99536 * 12 10 8 14 14 H 1.48500 * 109.46585 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46730 * 299.99515 * 12 10 8 16 16 C 1.53111 * 109.16321 * 57.65644 * 5 4 2 17 17 C 1.53036 * 109.27779 * 302.34175 * 16 5 4 18 18 H 1.09003 * 109.46545 * 179.18966 * 17 16 5 19 19 C 1.52998 * 109.46440 * 299.16144 * 17 16 5 20 20 N 1.46843 * 109.46401 * 119.96814 * 2 1 3 21 21 H 1.09002 * 109.46931 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47104 * 299.96868 * 1 2 3 23 23 H 1.08998 * 109.47282 * 59.97836 * 1 2 3 24 24 H 1.08998 * 109.50262 * 60.85982 * 4 2 1 25 25 H 1.08995 * 109.53413 * 300.75879 * 4 2 1 26 26 H 1.09000 * 109.52169 * 297.68160 * 5 4 2 27 27 H 1.09002 * 109.47259 * 300.00293 * 7 6 5 28 28 H 1.09001 * 109.47074 * 60.00315 * 7 6 5 29 29 H 0.97000 * 120.00333 * 179.97438 * 11 10 8 30 30 H 1.09007 * 109.50480 * 62.28430 * 16 5 4 31 31 H 1.09001 * 109.50620 * 182.40322 * 16 5 4 32 32 H 1.08996 * 109.47417 * 180.02562 * 19 17 16 33 33 H 1.08991 * 109.47269 * 300.05537 * 19 17 16 34 34 H 1.09008 * 109.46570 * 60.05157 * 19 17 16 35 35 H 1.00899 * 111.00593 * 305.85935 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5710 -0.7359 -1.2355 6 8 4.0522 -1.4573 -2.3714 7 6 5.3210 -1.0075 -2.8508 8 6 5.7287 -1.8333 -4.0437 9 1 5.0832 -2.6222 -4.4003 10 6 6.9257 -1.5814 -4.6798 11 7 7.7115 -0.6202 -4.2459 12 14 7.4308 -2.6045 -6.1589 13 1 6.4158 -2.4568 -7.2328 14 1 8.7494 -2.1371 -6.6570 15 1 7.5284 -4.0323 -5.7630 16 6 4.0549 -1.4186 0.0467 17 6 3.4865 -0.6775 1.2591 18 1 3.8175 -1.1697 2.1736 19 6 3.9832 0.7696 1.2508 20 7 2.0193 -0.6916 1.1994 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5134 0.8903 23 1 -0.3634 0.5142 -0.8898 24 1 1.6894 -0.1982 -2.1399 25 1 1.6660 -1.7446 -1.2582 26 1 3.9456 0.2872 -1.2683 27 1 5.2486 0.0403 -3.1423 28 1 6.0660 -1.1148 -2.0625 29 1 8.5539 -0.4433 -4.6931 30 1 3.7126 -2.4534 0.0595 31 1 5.1440 -1.3944 0.0832 32 1 3.5789 1.2975 2.1145 33 1 5.0721 0.7803 1.2951 34 1 3.6519 1.2622 0.3366 35 1 1.6196 -0.2924 2.0354 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261102557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:52 Heat of formation + Delta-G solvation = -86.888202 kcal Electronic energy + Delta-G solvation = -14792.899109 eV Core-core repulsion = 12403.099766 eV Total energy + Delta-G solvation = -2389.799343 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.67721 -38.01703 -34.97597 -34.10940 -32.19013 -29.34859 -28.68614 -27.56193 -24.68771 -23.49051 -22.40574 -19.89817 -18.68078 -17.60653 -17.28038 -16.46364 -16.31910 -15.84586 -15.39641 -14.89525 -14.48958 -14.21178 -13.85530 -13.56520 -13.35125 -13.01128 -12.85284 -12.77629 -12.64045 -12.52954 -12.19585 -11.97042 -11.88557 -11.72344 -11.27402 -11.25193 -10.81164 -10.13398 -9.36207 -8.34731 -6.48069 1.38086 1.43294 1.51778 2.32697 2.98558 3.07697 3.19547 3.78373 3.84867 4.05409 4.11985 4.24071 4.28911 4.42664 4.50587 4.56725 4.66643 4.78799 4.86965 4.92576 4.97565 5.04520 5.09038 5.13031 5.17427 5.26706 5.30861 5.43680 5.53434 5.93660 6.08826 6.51757 6.60044 6.80455 7.24355 8.77411 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.051550 B = 0.006584 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.032606 B = 4251.691087 C = 4536.728032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.087 3.913 3 H 0.045 0.955 4 C -0.103 4.103 5 C 0.077 3.923 6 O -0.407 6.407 7 C 0.215 3.785 8 C -0.553 4.553 9 H 0.061 0.939 10 C 0.007 3.993 11 N -0.930 5.930 12 Si 0.985 3.015 13 H -0.265 1.265 14 H -0.273 1.273 15 H -0.265 1.265 16 C -0.128 4.128 17 C 0.095 3.905 18 H 0.101 0.899 19 C -0.187 4.187 20 N -0.679 5.679 21 H 0.060 0.940 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.041 0.959 27 H -0.019 1.019 28 H -0.016 1.016 29 H 0.272 0.728 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.013 2.760 11.089 15.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.022 4.022 3 H 0.063 0.937 4 C -0.141 4.141 5 C 0.019 3.981 6 O -0.327 6.327 7 C 0.140 3.860 8 C -0.591 4.591 9 H 0.079 0.921 10 C -0.191 4.191 11 N -0.569 5.569 12 Si 0.807 3.193 13 H -0.189 1.189 14 H -0.197 1.197 15 H -0.190 1.190 16 C -0.167 4.167 17 C -0.015 4.015 18 H 0.119 0.881 19 C -0.246 4.246 20 N -0.313 5.313 21 H 0.079 0.921 22 H 0.093 0.907 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.059 0.941 27 H -0.001 1.001 28 H 0.002 0.998 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.994 2.083 10.695 15.479 hybrid contribution 1.085 0.832 -0.470 1.446 sum -9.909 2.914 10.225 14.534 Atomic orbital electron populations 1.21761 0.92145 1.02792 1.02811 1.21427 0.96515 0.95028 0.89264 0.93735 1.21675 0.92296 1.01869 0.98238 1.22278 0.95558 0.94060 0.86199 1.87839 1.37775 1.60284 1.46814 1.19787 0.80099 0.93172 0.92987 1.21384 1.05286 1.18584 1.13825 0.92080 1.25990 0.95420 0.96658 1.01073 1.70064 1.12335 1.31909 1.42627 0.85216 0.77706 0.78605 0.77786 1.18945 1.19748 1.18972 1.22017 0.99461 1.00474 0.94714 1.21412 0.87837 0.94598 0.97643 0.88116 1.22557 1.02041 0.97794 1.02200 1.60452 1.06108 1.59496 1.05205 0.92088 0.90716 0.91555 0.91671 0.91538 0.94145 1.00122 0.99788 0.91951 0.91763 0.93282 0.90263 0.92597 0.93386 0.82388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.43 71.98 0.68 -1.86 16 2 C 0.09 2.11 2.74 44.94 0.12 2.24 16 3 H 0.04 1.08 6.19 -2.38 -0.01 1.06 16 4 C -0.10 -3.36 5.03 30.65 0.15 -3.21 16 5 C 0.08 3.10 2.37 30.67 0.07 3.17 16 6 O -0.41 -21.22 9.98 -148.98 -1.49 -22.71 16 7 C 0.21 12.61 5.50 71.24 0.39 13.00 16 8 C -0.55 -34.12 9.43 25.60 0.24 -33.87 16 9 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 10 C 0.01 0.42 5.46 84.65 0.46 0.89 16 11 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 12 Si 0.98 45.15 29.54 68.60 2.03 47.18 16 13 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 16 C -0.13 -4.55 5.24 30.64 0.16 -4.39 16 17 C 0.10 2.44 3.68 44.94 0.17 2.60 16 18 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 19 C -0.19 -4.50 8.59 71.98 0.62 -3.88 16 20 N -0.68 -15.48 6.31 -469.57 -2.96 -18.44 16 21 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.04 1.68 6.21 -2.39 -0.01 1.66 16 27 H -0.02 -1.16 8.09 -2.39 -0.02 -1.18 16 28 H -0.02 -0.96 7.96 -2.39 -0.02 -0.98 16 29 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 30 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.05 1.88 7.96 -2.39 -0.02 1.87 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 34 H 0.05 1.30 4.80 -2.38 -0.01 1.28 16 35 H 0.36 6.02 8.79 -89.69 -0.79 5.23 16 Total: -1.00 -67.93 277.29 1.20 -66.74 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.27 Total: 9.26 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: 3.07 Total: -25.31 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -2.68 Total: -75.15 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -1.49 Total: -22.71 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -67.93 1.20 -66.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261102557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.153 kcal (2) G-P(sol) polarization free energy of solvation -67.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds