Wall clock time and date at job start Mon Mar 30 2020 04:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.48637 * 2 1 4 4 C 1.53083 * 109.47920 * 239.97522 * 2 1 3 5 5 C 1.53178 * 109.16311 * 182.40597 * 4 2 1 6 6 C 1.50698 * 109.54434 * 176.84741 * 5 4 2 7 7 H 1.07999 * 120.00534 * 244.30486 * 6 5 4 8 8 C 1.37879 * 120.00088 * 64.03140 * 6 5 4 9 9 N 1.31514 * 120.00061 * 354.72414 * 8 6 5 10 10 Si 1.86805 * 120.00344 * 174.72808 * 8 6 5 11 11 H 1.48495 * 109.47371 * 89.99824 * 10 8 6 12 12 H 1.48498 * 109.47298 * 210.00015 * 10 8 6 13 13 H 1.48505 * 109.46763 * 329.99813 * 10 8 6 14 14 C 1.52997 * 109.54540 * 297.02483 * 5 4 2 15 15 N 1.46902 * 109.47177 * 185.48667 * 14 5 4 16 16 C 1.53178 * 109.10868 * 56.93847 * 5 4 2 17 17 C 1.53106 * 109.15339 * 303.15338 * 16 5 4 18 18 H 1.09001 * 109.40484 * 297.48676 * 17 16 5 19 19 C 1.53003 * 109.48896 * 177.51015 * 17 16 5 20 20 O 1.42894 * 109.49032 * 57.47456 * 17 16 5 21 21 H 1.08996 * 109.47280 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47277 * 300.02291 * 1 2 3 23 23 H 1.08997 * 109.47599 * 60.02305 * 1 2 3 24 24 H 1.09005 * 109.52472 * 62.50348 * 4 2 1 25 25 H 1.08998 * 109.58042 * 302.34406 * 4 2 1 26 26 H 0.96996 * 120.00286 * 180.02562 * 9 8 6 27 27 H 1.09002 * 109.47186 * 305.48583 * 14 5 4 28 28 H 1.08999 * 109.47003 * 65.48303 * 14 5 4 29 29 H 1.00904 * 110.99603 * 179.97438 * 15 14 5 30 30 H 1.00894 * 110.99768 * 303.94934 * 15 14 5 31 31 H 1.08996 * 109.52327 * 62.96671 * 16 5 4 32 32 H 1.09002 * 109.51933 * 183.16084 * 16 5 4 33 33 H 1.08991 * 109.47002 * 299.96147 * 19 17 16 34 34 H 1.09001 * 109.47073 * 59.95837 * 19 17 16 35 35 H 1.08998 * 109.47016 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2495 5 6 3.5710 -0.7707 -1.2122 6 6 4.0799 -1.5474 -2.3992 7 1 4.6100 -2.4763 -2.2498 8 6 3.8638 -1.0748 -3.6763 9 7 3.1255 -0.0029 -3.8647 10 14 4.6195 -1.9572 -5.1392 11 1 3.6786 -2.9953 -5.6312 12 1 4.8876 -0.9783 -6.2232 13 1 5.8931 -2.5993 -4.7259 14 6 4.1295 0.6530 -1.2546 15 7 5.5945 0.6017 -1.3512 16 6 4.0195 -1.4588 0.0808 17 6 3.4307 -0.7093 1.2790 18 1 3.8193 0.3089 1.2958 19 6 3.8227 -1.4265 2.5724 20 8 2.0066 -0.6742 1.1664 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5142 0.8898 23 1 -0.3634 0.5134 -0.8901 24 1 1.7148 -0.1841 -2.1399 25 1 1.6443 -1.7373 -1.2722 26 1 2.9731 0.3293 -4.7631 27 1 3.7263 1.1758 -2.1219 28 1 3.8436 1.1827 -0.3458 29 1 5.9876 1.5306 -1.3812 30 1 5.9883 0.0664 -0.5921 31 1 3.6645 -2.4893 0.0870 32 1 5.1078 -1.4471 0.1410 33 1 3.4345 -2.4447 2.5553 34 1 4.9090 -1.4532 2.6582 35 1 3.4037 -0.8924 3.4253 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261109674.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:34 Heat of formation + Delta-G solvation = -58.201101 kcal Electronic energy + Delta-G solvation = -15707.610012 eV Core-core repulsion = 13319.054636 eV Total energy + Delta-G solvation = -2388.555377 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.15343 -35.14138 -33.04173 -31.77415 -30.84876 -28.92570 -25.47853 -25.09544 -23.36582 -21.15901 -20.89362 -17.94235 -16.03531 -15.68860 -14.98715 -14.75083 -14.41495 -13.71043 -13.48805 -13.02987 -12.71215 -12.31942 -11.93023 -11.80462 -11.59236 -11.46230 -11.04350 -10.99558 -10.72202 -10.49672 -10.18621 -10.00142 -9.94807 -9.48225 -9.23530 -8.85479 -8.39107 -8.05487 -7.29056 -5.83370 -3.86450 3.39590 3.46241 3.51585 4.40003 4.56584 5.41780 5.51021 5.64186 5.74336 5.80726 5.82600 5.93622 6.00457 6.14600 6.24643 6.34771 6.37015 6.47503 6.56576 6.57349 6.64938 6.78617 6.99581 7.05010 7.28642 7.50569 7.77887 7.81593 8.08059 8.23905 8.36331 8.56863 8.64174 9.07221 9.76370 11.20107 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.033004 B = 0.011928 C = 0.010432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.182235 B = 2346.908683 C = 2683.494894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.080 3.920 3 H 0.046 0.954 4 C -0.129 4.129 5 C 0.076 3.924 6 C -0.475 4.475 7 H 0.050 0.950 8 C 0.074 3.926 9 N -0.894 5.894 10 Si 0.890 3.110 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.075 3.925 15 N -0.824 5.824 16 C -0.134 4.134 17 C 0.085 3.915 18 H 0.045 0.955 19 C -0.142 4.142 20 O -0.391 6.391 21 H 0.056 0.944 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.045 0.955 26 H 0.256 0.744 27 H 0.098 0.902 28 H -0.024 1.024 29 H 0.313 0.687 30 H 0.318 0.682 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.684 1.190 7.763 7.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.023 3.977 3 H 0.063 0.937 4 C -0.167 4.167 5 C 0.075 3.925 6 C -0.513 4.513 7 H 0.068 0.932 8 C -0.126 4.126 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.202 1.202 14 C -0.055 4.055 15 N -0.351 5.351 16 C -0.172 4.172 17 C 0.027 3.973 18 H 0.063 0.937 19 C -0.199 4.199 20 O -0.311 6.311 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.086 0.914 24 H 0.116 0.884 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.116 0.884 28 H -0.006 1.006 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.000 0.837 7.044 7.163 hybrid contribution 0.631 0.197 -0.145 0.677 sum -0.369 1.034 6.898 6.985 Atomic orbital electron populations 1.21726 0.94721 1.02025 1.01103 1.22296 0.93529 0.95134 0.86781 0.93651 1.22265 0.98393 0.99553 0.96504 1.18154 0.91053 0.91848 0.91455 1.20764 1.34358 1.06263 0.89891 0.93222 1.24733 0.94653 0.94840 0.98393 1.69744 1.38924 1.23679 1.21067 0.86644 0.79660 0.79099 0.82678 1.21410 1.21576 1.20180 1.22015 0.86587 0.99131 0.97776 1.58601 1.07071 1.17382 1.52064 1.22288 0.99403 0.99763 0.95711 1.22086 0.81835 0.98004 0.95332 0.93722 1.21761 1.00599 1.00969 0.96550 1.87739 1.20697 1.78597 1.44066 0.92453 0.93349 0.91447 0.88362 0.93603 0.93435 0.88376 1.00577 0.87717 0.86961 0.92535 0.92525 0.92228 0.91784 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.56 37.16 0.36 -2.00 16 2 C 0.08 1.60 2.99 -26.69 -0.08 1.52 16 3 H 0.05 0.93 6.74 -51.93 -0.35 0.58 16 4 C -0.13 -2.98 3.97 -26.60 -0.11 -3.08 16 5 C 0.08 1.78 0.32 -155.48 -0.05 1.73 16 6 C -0.47 -12.67 7.46 -34.44 -0.26 -12.93 16 7 H 0.05 1.36 7.75 -52.49 -0.41 0.95 16 8 C 0.07 1.99 5.14 -17.82 -0.09 1.90 16 9 N -0.89 -24.43 9.51 55.43 0.53 -23.90 16 10 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.08 1.71 4.83 -3.82 -0.02 1.69 16 15 N -0.82 -17.33 9.03 -10.37 -0.09 -17.42 16 16 C -0.13 -2.78 4.00 -26.58 -0.11 -2.89 16 17 C 0.08 1.59 2.99 -26.67 -0.08 1.51 16 18 H 0.04 0.84 6.49 -51.93 -0.34 0.51 16 19 C -0.14 -2.15 9.57 37.16 0.36 -1.79 16 20 O -0.39 -7.91 10.05 -35.23 -0.35 -8.27 16 21 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.10 2.49 6.30 -51.93 -0.33 2.16 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 27 H 0.10 2.54 6.17 -51.93 -0.32 2.22 16 28 H -0.02 -0.51 5.05 -51.93 -0.26 -0.77 16 29 H 0.31 5.79 9.08 -39.29 -0.36 5.43 16 30 H 0.32 6.17 7.24 -39.29 -0.28 5.89 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.13 6.59 -51.93 -0.34 0.79 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 265.11 15.07 4.00 4.00 Total: -1.00 -27.94 265.11 -6.53 -34.47 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -5.50 Total: 8.75 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -0.08 Total: -14.35 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.43 Total: -41.32 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.35 Total: -8.27 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.94 -6.53 -34.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109674.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.736 kcal (2) G-P(sol) polarization free energy of solvation -27.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds