Wall clock time and date at job start Mon Mar 30 2020 04:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.48637 * 2 1 4 4 C 1.53083 * 109.47920 * 239.97522 * 2 1 3 5 5 C 1.53178 * 109.16311 * 182.40597 * 4 2 1 6 6 C 1.50698 * 109.54434 * 176.84741 * 5 4 2 7 7 H 1.07999 * 120.00534 * 244.30486 * 6 5 4 8 8 C 1.37879 * 120.00088 * 64.03140 * 6 5 4 9 9 N 1.31514 * 120.00061 * 354.72414 * 8 6 5 10 10 Si 1.86805 * 120.00344 * 174.72808 * 8 6 5 11 11 H 1.48495 * 109.47371 * 89.99824 * 10 8 6 12 12 H 1.48498 * 109.47298 * 210.00015 * 10 8 6 13 13 H 1.48505 * 109.46763 * 329.99813 * 10 8 6 14 14 C 1.52997 * 109.54540 * 297.02483 * 5 4 2 15 15 N 1.46902 * 109.47177 * 185.48667 * 14 5 4 16 16 C 1.53178 * 109.10868 * 56.93847 * 5 4 2 17 17 C 1.53106 * 109.15339 * 303.15338 * 16 5 4 18 18 H 1.09001 * 109.40484 * 297.48676 * 17 16 5 19 19 C 1.53003 * 109.48896 * 177.51015 * 17 16 5 20 20 O 1.42894 * 109.49032 * 57.47456 * 17 16 5 21 21 H 1.08996 * 109.47280 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47277 * 300.02291 * 1 2 3 23 23 H 1.08997 * 109.47599 * 60.02305 * 1 2 3 24 24 H 1.09005 * 109.52472 * 62.50348 * 4 2 1 25 25 H 1.08998 * 109.58042 * 302.34406 * 4 2 1 26 26 H 0.96996 * 120.00286 * 180.02562 * 9 8 6 27 27 H 1.09002 * 109.47186 * 305.48583 * 14 5 4 28 28 H 1.08999 * 109.47003 * 65.48303 * 14 5 4 29 29 H 1.00904 * 110.99603 * 179.97438 * 15 14 5 30 30 H 1.00894 * 110.99768 * 303.94934 * 15 14 5 31 31 H 1.08996 * 109.52327 * 62.96671 * 16 5 4 32 32 H 1.09002 * 109.51933 * 183.16084 * 16 5 4 33 33 H 1.08991 * 109.47002 * 299.96147 * 19 17 16 34 34 H 1.09001 * 109.47073 * 59.95837 * 19 17 16 35 35 H 1.08998 * 109.47016 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2495 5 6 3.5710 -0.7707 -1.2122 6 6 4.0799 -1.5474 -2.3992 7 1 4.6100 -2.4763 -2.2498 8 6 3.8638 -1.0748 -3.6763 9 7 3.1255 -0.0029 -3.8647 10 14 4.6195 -1.9572 -5.1392 11 1 3.6786 -2.9953 -5.6312 12 1 4.8876 -0.9783 -6.2232 13 1 5.8931 -2.5993 -4.7259 14 6 4.1295 0.6530 -1.2546 15 7 5.5945 0.6017 -1.3512 16 6 4.0195 -1.4588 0.0808 17 6 3.4307 -0.7093 1.2790 18 1 3.8193 0.3089 1.2958 19 6 3.8227 -1.4265 2.5724 20 8 2.0066 -0.6742 1.1664 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5142 0.8898 23 1 -0.3634 0.5134 -0.8901 24 1 1.7148 -0.1841 -2.1399 25 1 1.6443 -1.7373 -1.2722 26 1 2.9731 0.3293 -4.7631 27 1 3.7263 1.1758 -2.1219 28 1 3.8436 1.1827 -0.3458 29 1 5.9876 1.5306 -1.3812 30 1 5.9883 0.0664 -0.5921 31 1 3.6645 -2.4893 0.0870 32 1 5.1078 -1.4471 0.1410 33 1 3.4345 -2.4447 2.5553 34 1 4.9090 -1.4532 2.6582 35 1 3.4037 -0.8924 3.4253 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261109674.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:34 Heat of formation + Delta-G solvation = -76.937693 kcal Electronic energy + Delta-G solvation = -15708.422492 eV Core-core repulsion = 13319.054636 eV Total energy + Delta-G solvation = -2389.367856 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.81140 -36.90258 -34.57834 -33.68417 -32.58448 -30.41793 -27.12693 -26.96695 -25.15384 -22.73836 -22.51353 -19.73091 -17.97860 -17.26440 -16.71933 -16.66150 -16.07950 -15.43574 -15.16339 -14.65949 -14.26732 -13.99031 -13.58655 -13.22424 -13.03171 -12.87119 -12.78556 -12.66001 -12.60014 -12.33735 -12.09810 -11.74310 -11.66115 -11.29414 -10.97753 -10.67674 -10.32347 -9.89097 -8.99994 -7.88344 -5.96981 1.42939 1.46331 1.54286 2.54109 2.92227 3.37224 4.04148 4.15815 4.19471 4.24266 4.38167 4.45923 4.49905 4.70411 4.71883 4.78211 4.84346 4.99133 5.04443 5.11689 5.20560 5.22752 5.30208 5.34611 5.49530 5.67636 5.76742 5.96228 6.22914 6.48391 6.54616 6.78703 6.97638 7.07480 7.66875 9.11242 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.033004 B = 0.011928 C = 0.010432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.182235 B = 2346.908683 C = 2683.494894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.084 3.916 3 H 0.044 0.956 4 C -0.121 4.121 5 C 0.065 3.935 6 C -0.487 4.487 7 H 0.035 0.965 8 C 0.036 3.964 9 N -0.906 5.906 10 Si 0.936 3.064 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.278 1.278 14 C 0.089 3.911 15 N -0.835 5.835 16 C -0.127 4.127 17 C 0.083 3.917 18 H 0.047 0.953 19 C -0.136 4.136 20 O -0.396 6.396 21 H 0.056 0.944 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.025 0.975 26 H 0.253 0.747 27 H 0.066 0.934 28 H -0.010 1.010 29 H 0.328 0.672 30 H 0.330 0.670 31 H 0.041 0.959 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.382 1.375 9.084 9.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.026 3.974 3 H 0.062 0.938 4 C -0.160 4.160 5 C 0.064 3.936 6 C -0.526 4.526 7 H 0.053 0.947 8 C -0.163 4.163 9 N -0.547 5.547 10 Si 0.764 3.236 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.204 1.204 14 C -0.042 4.042 15 N -0.364 5.364 16 C -0.165 4.165 17 C 0.026 3.974 18 H 0.065 0.935 19 C -0.193 4.193 20 O -0.316 6.316 21 H 0.075 0.925 22 H 0.089 0.911 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.008 0.992 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.691 1.021 8.374 8.464 hybrid contribution 0.566 0.125 -0.568 0.812 sum -0.125 1.146 7.805 7.890 Atomic orbital electron populations 1.21705 0.92377 1.02475 1.02558 1.22226 0.95463 0.94315 0.85366 0.93839 1.22095 0.98372 0.98287 0.97271 1.18227 0.91264 0.92297 0.91799 1.21003 1.34161 1.06047 0.91356 0.94688 1.25253 0.95233 0.95579 1.00195 1.69872 1.39428 1.24329 1.21036 0.85922 0.78861 0.78236 0.80531 1.21219 1.21581 1.20361 1.21695 0.87470 0.98146 0.96852 1.58472 1.06230 1.18830 1.52862 1.22184 0.99929 0.98886 0.95493 1.22223 0.80954 0.98228 0.96023 0.93464 1.21750 1.02116 1.00488 0.94905 1.87757 1.21697 1.78559 1.43595 0.92520 0.91115 0.90790 0.90880 0.95642 0.93770 0.91585 0.99224 0.86021 0.85705 0.93984 0.91738 0.92407 0.89632 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.56 71.98 0.69 -3.66 16 2 C 0.08 3.27 2.99 30.62 0.09 3.36 16 3 H 0.04 1.73 6.74 -2.39 -0.02 1.71 16 4 C -0.12 -5.67 3.97 30.68 0.12 -5.55 16 5 C 0.06 3.04 0.32 -52.81 -0.02 3.02 16 6 C -0.49 -26.21 7.46 25.60 0.19 -26.02 16 7 H 0.03 1.93 7.75 -2.91 -0.02 1.91 16 8 C 0.04 1.94 5.14 84.66 0.43 2.37 16 9 N -0.91 -50.11 9.51 21.45 0.20 -49.91 16 10 Si 0.94 44.78 29.54 68.60 2.03 46.80 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 12 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 13 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 14 C 0.09 4.00 4.83 86.30 0.42 4.42 16 15 N -0.83 -34.07 9.03 -186.72 -1.69 -35.75 16 16 C -0.13 -5.15 4.00 30.69 0.12 -5.03 16 17 C 0.08 2.92 2.99 30.63 0.09 3.01 16 18 H 0.05 1.65 6.49 -2.39 -0.02 1.64 16 19 C -0.14 -3.68 9.57 71.98 0.69 -2.99 16 20 O -0.40 -15.27 10.05 -148.98 -1.50 -16.77 16 21 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 23 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.07 3.77 6.30 -2.38 -0.02 3.76 16 25 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 27 H 0.07 3.43 6.17 -2.39 -0.01 3.42 16 28 H -0.01 -0.42 5.05 -2.39 -0.01 -0.43 16 29 H 0.33 11.64 9.08 -89.69 -0.81 10.83 16 30 H 0.33 12.19 7.24 -89.70 -0.65 11.54 16 31 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 2.48 6.59 -2.39 -0.02 2.46 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -58.73 265.11 1.50 -57.23 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: -0.38 Total: 25.44 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 2.83 Total: -27.05 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -1.48 Total: -85.66 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -1.50 Total: -16.77 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -58.73 1.50 -57.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109674.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.705 kcal (2) G-P(sol) polarization free energy of solvation -58.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds