Wall clock time and date at job start Mon Mar 30 2020 02:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47093 * 2 1 4 4 N 1.46901 * 109.47314 * 120.00016 * 2 1 3 5 5 C 1.46902 * 111.00149 * 141.90125 * 4 2 1 6 6 C 1.50704 * 109.52241 * 305.04226 * 5 4 2 7 7 H 1.07997 * 120.00114 * 118.70578 * 6 5 4 8 8 C 1.37882 * 119.99769 * 298.70885 * 6 5 4 9 9 N 1.31511 * 119.99544 * 181.32020 * 8 6 5 10 10 Si 1.86791 * 120.00038 * 1.31498 * 8 6 5 11 11 H 1.48501 * 109.47276 * 265.78349 * 10 8 6 12 12 H 1.48505 * 109.47048 * 145.78412 * 10 8 6 13 13 H 1.48503 * 109.47373 * 25.78916 * 10 8 6 14 14 C 1.53170 * 109.52424 * 184.91464 * 5 4 2 15 15 C 1.53177 * 109.03892 * 183.04736 * 14 5 4 16 16 C 1.53094 * 109.15935 * 56.98341 * 15 14 5 17 17 O 1.42906 * 109.41643 * 302.39116 * 16 15 14 18 18 C 1.42908 * 114.09744 * 61.15716 * 17 16 15 19 19 H 1.08999 * 109.47259 * 304.94587 * 1 2 3 20 20 H 1.08997 * 109.47658 * 64.94527 * 1 2 3 21 21 H 1.09005 * 109.47056 * 184.94428 * 1 2 3 22 22 H 1.09000 * 109.47102 * 240.00063 * 2 1 3 23 23 H 1.08998 * 109.47050 * 185.17800 * 3 2 1 24 24 H 1.09003 * 109.46669 * 305.17450 * 3 2 1 25 25 H 1.08991 * 109.47046 * 65.17473 * 3 2 1 26 26 H 1.00902 * 111.00098 * 265.85546 * 4 2 1 27 27 H 0.97005 * 119.99827 * 179.97438 * 9 8 6 28 28 H 1.08998 * 109.54811 * 302.92354 * 14 5 4 29 29 H 1.09006 * 109.54556 * 63.18294 * 14 5 4 30 30 H 1.09003 * 109.52211 * 176.88497 * 15 14 5 31 31 H 1.08993 * 109.52617 * 297.07919 * 15 14 5 32 32 H 1.08999 * 109.48152 * 62.37370 * 16 15 14 33 33 H 1.08997 * 109.47962 * 182.40655 * 16 15 14 34 34 H 1.08994 * 109.48261 * 178.86214 * 18 17 16 35 35 H 1.09000 * 109.47713 * 58.82372 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.2127 -1.4936 0.8946 6 6 2.9082 -2.4393 -0.2386 7 1 3.4619 -2.3702 -1.1632 8 6 1.9226 -3.3928 -0.0948 9 7 1.6747 -4.2349 -1.0740 10 14 0.9399 -3.4885 1.4908 11 1 1.5635 -4.4828 2.4005 12 1 -0.4533 -3.9024 1.1854 13 1 0.9278 -2.1563 2.1469 14 6 3.6216 -2.2949 2.1343 15 6 4.9090 -3.0666 1.8282 16 6 5.9943 -2.0796 1.3903 17 8 5.5378 -1.3455 0.2524 18 6 4.3635 -0.5674 0.4927 19 1 -0.3634 0.5886 0.8423 20 1 -0.3634 0.4352 -0.9309 21 1 -0.3633 -1.0239 0.0886 22 1 1.8933 -0.5138 -0.8900 23 1 3.1260 1.4439 -0.0927 24 1 1.6028 1.9823 -0.8401 25 1 1.7543 1.9288 0.9326 26 1 2.2044 -0.0380 1.9448 27 1 0.9816 -4.9060 -0.9728 28 1 3.7939 -1.6143 2.9680 29 1 2.8287 -2.9968 2.3928 30 1 5.2376 -3.5961 2.7225 31 1 4.7231 -3.7823 1.0275 32 1 6.2085 -1.3892 2.2062 33 1 6.9001 -2.6272 1.1301 34 1 4.0944 -0.0257 -0.4140 35 1 4.5563 0.1427 1.2969 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261109997.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:11 Heat of formation + Delta-G solvation = -35.751987 kcal Electronic energy + Delta-G solvation = -15951.881628 eV Core-core repulsion = 13564.299717 eV Total energy + Delta-G solvation = -2387.581910 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.09029 -36.20989 -33.30455 -31.73277 -30.75583 -27.33128 -26.67324 -25.01150 -24.31446 -21.75039 -19.66981 -19.03222 -16.22121 -15.88212 -15.27706 -14.76201 -14.44295 -14.05473 -13.54542 -13.19450 -12.72459 -12.48181 -12.25268 -12.08410 -11.75398 -11.56877 -11.33467 -10.80251 -10.67899 -10.40754 -10.10842 -10.02015 -9.75715 -9.64327 -9.44513 -8.99446 -8.74981 -8.37031 -6.90218 -5.96123 -4.00889 3.47967 3.62563 3.91389 4.61825 4.70732 5.12586 5.43933 5.61471 5.63674 5.72476 5.76849 5.86466 5.91726 5.98118 6.01148 6.17825 6.24222 6.31931 6.37713 6.39267 6.53686 6.54061 6.59863 6.79538 7.00858 7.08274 7.12774 7.22952 7.67604 7.87589 8.16178 8.44604 8.72083 9.07517 9.69556 11.13803 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023141 B = 0.019410 C = 0.013290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.696150 B = 1442.231048 C = 2106.387573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.078 3.922 3 C -0.179 4.179 4 N -0.667 5.667 5 C 0.176 3.824 6 C -0.494 4.494 7 H 0.074 0.926 8 C 0.086 3.914 9 N -0.900 5.900 10 Si 0.861 3.139 11 H -0.303 1.303 12 H -0.313 1.313 13 H -0.189 1.189 14 C -0.107 4.107 15 C -0.144 4.144 16 C 0.069 3.931 17 O -0.376 6.376 18 C 0.054 3.946 19 H 0.039 0.961 20 H 0.043 0.957 21 H 0.057 0.943 22 H 0.102 0.898 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.308 0.692 27 H 0.261 0.739 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.032 0.968 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.635 7.650 5.768 9.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.032 4.032 3 C -0.237 4.237 4 N -0.298 5.298 5 C 0.087 3.913 6 C -0.532 4.532 7 H 0.092 0.908 8 C -0.118 4.118 9 N -0.537 5.537 10 Si 0.692 3.308 11 H -0.232 1.232 12 H -0.243 1.243 13 H -0.111 1.111 14 C -0.145 4.145 15 C -0.182 4.182 16 C -0.008 4.008 17 O -0.293 6.293 18 C -0.025 4.025 19 H 0.058 0.942 20 H 0.062 0.938 21 H 0.076 0.924 22 H 0.120 0.880 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.125 0.875 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 2.202 6.994 5.451 9.137 hybrid contribution -0.097 0.365 0.964 1.036 sum 2.105 7.360 6.415 9.987 Atomic orbital electron populations 1.21722 0.96284 1.01576 0.99315 1.21465 0.94540 0.90707 0.96481 1.22669 1.01022 0.99113 1.00934 1.61550 1.34714 1.26062 1.07506 1.19658 0.85564 0.91778 0.94283 1.20526 1.19522 1.13822 0.99363 0.90832 1.24938 0.96062 0.94216 0.96551 1.69954 1.32148 1.18775 1.32778 0.87490 0.77336 0.81067 0.84924 1.23236 1.24255 1.11105 1.21773 0.97008 0.98618 0.97119 1.22062 0.95452 0.99370 1.01347 1.22390 0.96510 0.93377 0.88520 1.87869 1.43736 1.62523 1.35181 1.23414 0.86722 0.92745 0.99588 0.94216 0.93820 0.92400 0.88021 0.92918 0.93025 0.93538 0.87489 0.93005 0.94731 0.92238 0.93038 0.89280 0.94977 0.90157 0.89695 0.96288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 9.52 37.15 0.35 -2.01 16 2 C 0.08 1.48 2.46 -67.71 -0.17 1.31 16 3 C -0.18 -2.75 8.85 37.16 0.33 -2.42 16 4 N -0.67 -13.39 2.64 -94.07 -0.25 -13.64 16 5 C 0.18 3.85 0.29 -132.61 -0.04 3.81 16 6 C -0.49 -13.17 5.41 -34.44 -0.19 -13.35 16 7 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 8 C 0.09 2.41 5.44 -17.82 -0.10 2.32 16 9 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 10 Si 0.86 21.65 22.99 -169.99 -3.91 17.74 16 11 H -0.30 -7.77 6.98 56.52 0.39 -7.38 16 12 H -0.31 -8.26 7.11 56.52 0.40 -7.86 16 13 H -0.19 -4.36 5.07 56.52 0.29 -4.07 16 14 C -0.11 -2.25 4.60 -26.55 -0.12 -2.37 16 15 C -0.14 -2.84 5.88 -26.59 -0.16 -3.00 16 16 C 0.07 1.24 6.84 37.21 0.25 1.50 16 17 O -0.38 -7.97 10.45 -35.23 -0.37 -8.33 16 18 C 0.05 1.08 4.47 37.21 0.17 1.25 16 19 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 20 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 21 H 0.06 1.19 7.27 -51.93 -0.38 0.81 16 22 H 0.10 2.28 6.10 -51.93 -0.32 1.97 16 23 H 0.05 0.81 5.63 -51.93 -0.29 0.52 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.65 8.02 -51.93 -0.42 0.23 16 26 H 0.31 5.51 8.21 -39.29 -0.32 5.19 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 1.36 3.28 -51.93 -0.17 1.19 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 2.04 7.39 -51.93 -0.38 1.66 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.09 1.72 5.83 -51.93 -0.30 1.41 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 256.12 15.07 3.86 3.86 Total: -1.00 -29.66 256.12 -5.19 -34.86 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.64 Total: 5.09 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 0.34 Total: -12.97 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.52 Total: -40.24 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -0.37 Total: -8.33 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -3.91 Total: 17.74 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.66 -5.19 -34.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109997.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.896 kcal (2) G-P(sol) polarization free energy of solvation -29.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds