Wall clock time and date at job start Mon Mar 30 2020 02:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47093 * 2 1 4 4 N 1.46901 * 109.47314 * 120.00016 * 2 1 3 5 5 C 1.46902 * 111.00149 * 141.90125 * 4 2 1 6 6 C 1.50704 * 109.52241 * 305.04226 * 5 4 2 7 7 H 1.07997 * 120.00114 * 118.70578 * 6 5 4 8 8 C 1.37882 * 119.99769 * 298.70885 * 6 5 4 9 9 N 1.31511 * 119.99544 * 181.32020 * 8 6 5 10 10 Si 1.86791 * 120.00038 * 1.31498 * 8 6 5 11 11 H 1.48501 * 109.47276 * 265.78349 * 10 8 6 12 12 H 1.48505 * 109.47048 * 145.78412 * 10 8 6 13 13 H 1.48503 * 109.47373 * 25.78916 * 10 8 6 14 14 C 1.53170 * 109.52424 * 184.91464 * 5 4 2 15 15 C 1.53177 * 109.03892 * 183.04736 * 14 5 4 16 16 C 1.53094 * 109.15935 * 56.98341 * 15 14 5 17 17 O 1.42906 * 109.41643 * 302.39116 * 16 15 14 18 18 C 1.42908 * 114.09744 * 61.15716 * 17 16 15 19 19 H 1.08999 * 109.47259 * 304.94587 * 1 2 3 20 20 H 1.08997 * 109.47658 * 64.94527 * 1 2 3 21 21 H 1.09005 * 109.47056 * 184.94428 * 1 2 3 22 22 H 1.09000 * 109.47102 * 240.00063 * 2 1 3 23 23 H 1.08998 * 109.47050 * 185.17800 * 3 2 1 24 24 H 1.09003 * 109.46669 * 305.17450 * 3 2 1 25 25 H 1.08991 * 109.47046 * 65.17473 * 3 2 1 26 26 H 1.00902 * 111.00098 * 265.85546 * 4 2 1 27 27 H 0.97005 * 119.99827 * 179.97438 * 9 8 6 28 28 H 1.08998 * 109.54811 * 302.92354 * 14 5 4 29 29 H 1.09006 * 109.54556 * 63.18294 * 14 5 4 30 30 H 1.09003 * 109.52211 * 176.88497 * 15 14 5 31 31 H 1.08993 * 109.52617 * 297.07919 * 15 14 5 32 32 H 1.08999 * 109.48152 * 62.37370 * 16 15 14 33 33 H 1.08997 * 109.47962 * 182.40655 * 16 15 14 34 34 H 1.08994 * 109.48261 * 178.86214 * 18 17 16 35 35 H 1.09000 * 109.47713 * 58.82372 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.2127 -1.4936 0.8946 6 6 2.9082 -2.4393 -0.2386 7 1 3.4619 -2.3702 -1.1632 8 6 1.9226 -3.3928 -0.0948 9 7 1.6747 -4.2349 -1.0740 10 14 0.9399 -3.4885 1.4908 11 1 1.5635 -4.4828 2.4005 12 1 -0.4533 -3.9024 1.1854 13 1 0.9278 -2.1563 2.1469 14 6 3.6216 -2.2949 2.1343 15 6 4.9090 -3.0666 1.8282 16 6 5.9943 -2.0796 1.3903 17 8 5.5378 -1.3455 0.2524 18 6 4.3635 -0.5674 0.4927 19 1 -0.3634 0.5886 0.8423 20 1 -0.3634 0.4352 -0.9309 21 1 -0.3633 -1.0239 0.0886 22 1 1.8933 -0.5138 -0.8900 23 1 3.1260 1.4439 -0.0927 24 1 1.6028 1.9823 -0.8401 25 1 1.7543 1.9288 0.9326 26 1 2.2044 -0.0380 1.9448 27 1 0.9816 -4.9060 -0.9728 28 1 3.7939 -1.6143 2.9680 29 1 2.8287 -2.9968 2.3928 30 1 5.2376 -3.5961 2.7225 31 1 4.7231 -3.7823 1.0275 32 1 6.2085 -1.3892 2.2062 33 1 6.9001 -2.6272 1.1301 34 1 4.0944 -0.0257 -0.4140 35 1 4.5563 0.1427 1.2969 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261109997.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:11 Heat of formation + Delta-G solvation = -57.719137 kcal Electronic energy + Delta-G solvation = -15952.834195 eV Core-core repulsion = 13564.299717 eV Total energy + Delta-G solvation = -2388.534477 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.71982 -37.76399 -35.03961 -33.71948 -32.32598 -28.89568 -28.10333 -26.98421 -25.88282 -23.31445 -21.30628 -20.74791 -18.11709 -17.59675 -16.92893 -16.52956 -15.98161 -15.65197 -15.23317 -14.81766 -14.47003 -14.17284 -13.89219 -13.61303 -13.31224 -12.92236 -12.87373 -12.62709 -12.21737 -12.16145 -11.81527 -11.64706 -11.47751 -11.31774 -11.12140 -10.88226 -10.62199 -10.25578 -8.54215 -8.17083 -6.21889 1.44096 1.55897 1.89482 2.59434 3.07808 3.27361 3.69291 4.13774 4.16065 4.26503 4.30187 4.38483 4.46912 4.49742 4.66848 4.68286 4.78932 4.86590 4.91487 5.01005 5.06365 5.11722 5.17521 5.27036 5.41424 5.47562 5.56453 5.62648 5.80166 6.16682 6.39695 6.69345 6.78825 7.14028 7.51059 8.97468 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023141 B = 0.019410 C = 0.013290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.696150 B = 1442.231048 C = 2106.387573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.078 3.922 3 C -0.167 4.167 4 N -0.674 5.674 5 C 0.178 3.822 6 C -0.470 4.470 7 H 0.019 0.981 8 C 0.030 3.970 9 N -0.957 5.957 10 Si 0.914 3.086 11 H -0.310 1.310 12 H -0.336 1.336 13 H -0.146 1.146 14 C -0.112 4.112 15 C -0.145 4.145 16 C 0.066 3.934 17 O -0.405 6.405 18 C 0.058 3.942 19 H 0.066 0.934 20 H 0.056 0.944 21 H 0.024 0.976 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.331 0.669 27 H 0.255 0.745 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.211 10.340 8.652 13.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.032 4.032 3 C -0.226 4.226 4 N -0.307 5.307 5 C 0.088 3.912 6 C -0.509 4.509 7 H 0.038 0.962 8 C -0.167 4.167 9 N -0.598 5.598 10 Si 0.745 3.255 11 H -0.240 1.240 12 H -0.267 1.267 13 H -0.066 1.066 14 C -0.150 4.150 15 C -0.184 4.184 16 C -0.010 4.010 17 O -0.323 6.323 18 C -0.021 4.021 19 H 0.085 0.915 20 H 0.075 0.925 21 H 0.044 0.956 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.150 0.850 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.801 9.724 8.352 13.121 hybrid contribution -0.190 -0.438 -0.021 0.478 sum 2.611 9.286 8.331 12.745 Atomic orbital electron populations 1.21697 0.95493 1.00152 1.01305 1.21380 0.95130 0.92652 0.94052 1.22506 1.00924 0.96297 1.02836 1.61234 1.33634 1.27141 1.08666 1.19508 0.87007 0.91637 0.93058 1.20618 1.17284 1.14039 0.98940 0.96236 1.25673 0.97520 0.94225 0.99267 1.70116 1.33716 1.20589 1.35345 0.86778 0.74367 0.82607 0.81731 1.23954 1.26687 1.06615 1.21796 0.96808 0.98796 0.97578 1.22049 0.96010 0.99125 1.01179 1.22613 0.96223 0.93537 0.88636 1.87843 1.43958 1.63115 1.37383 1.23351 0.85709 0.92677 1.00337 0.91506 0.92453 0.95633 0.92696 0.92936 0.91816 0.91017 0.84978 0.93614 0.90712 0.94206 0.89832 0.94001 0.91430 0.88448 0.90729 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 9.52 71.98 0.69 -3.69 16 2 C 0.08 2.80 2.46 44.91 0.11 2.92 16 3 C -0.17 -4.52 8.85 71.98 0.64 -3.88 16 4 N -0.67 -25.00 2.64 -451.53 -1.19 -26.19 16 5 C 0.18 7.46 0.29 2.87 0.00 7.46 16 6 C -0.47 -25.91 5.41 25.60 0.14 -25.77 16 7 H 0.02 1.26 7.99 -2.91 -0.02 1.23 16 8 C 0.03 1.77 5.44 84.66 0.46 2.23 16 9 N -0.96 -61.77 13.96 21.45 0.30 -61.47 16 10 Si 0.91 45.49 22.99 68.60 1.58 47.07 16 11 H -0.31 -15.58 6.98 99.48 0.69 -14.88 16 12 H -0.34 -17.82 7.11 99.48 0.71 -17.11 16 13 H -0.15 -6.21 5.07 99.48 0.50 -5.70 16 14 C -0.11 -4.34 4.60 30.71 0.14 -4.20 16 15 C -0.15 -5.42 5.88 30.69 0.18 -5.24 16 16 C 0.07 2.17 6.84 72.01 0.49 2.67 16 17 O -0.40 -16.52 10.45 -148.98 -1.56 -18.08 16 18 C 0.06 2.17 4.47 72.01 0.32 2.50 16 19 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 20 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 21 H 0.02 1.01 7.27 -2.38 -0.02 0.99 16 22 H 0.05 2.51 6.10 -2.39 -0.01 2.50 16 23 H 0.05 1.43 5.63 -2.39 -0.01 1.42 16 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.07 1.61 8.02 -2.39 -0.02 1.60 16 26 H 0.33 10.06 8.21 -89.69 -0.74 9.33 16 27 H 0.26 15.88 8.31 -92.70 -0.77 15.11 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.04 1.71 3.28 -2.38 -0.01 1.71 16 30 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.04 1.93 7.39 -2.39 -0.02 1.92 16 32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.07 2.93 5.83 -2.39 -0.01 2.92 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -68.79 256.12 2.41 -66.38 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.12 Total: 17.32 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: 3.17 Total: -25.03 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -0.89 Total: -87.66 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -1.56 Total: -18.08 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.58 Total: 47.07 kcal Total: -68.79 2.41 -66.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109997.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.656 kcal (2) G-P(sol) polarization free energy of solvation -68.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds