Wall clock time and date at job start Mon Mar 30 2020 02:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47143 * 2 1 4 4 N 1.46894 * 109.47004 * 119.99980 * 2 1 3 5 5 C 1.46898 * 111.00029 * 110.17763 * 4 2 1 6 6 C 1.50704 * 109.57370 * 65.41741 * 5 4 2 7 7 H 1.07994 * 120.00347 * 236.24008 * 6 5 4 8 8 C 1.37879 * 119.99726 * 56.23983 * 6 5 4 9 9 N 1.31513 * 120.00032 * 199.70342 * 8 6 5 10 10 Si 1.86801 * 120.00151 * 19.70898 * 8 6 5 11 11 H 1.48499 * 109.47282 * 84.29310 * 10 8 6 12 12 H 1.48498 * 109.47205 * 204.29299 * 10 8 6 13 13 H 1.48497 * 109.46760 * 324.29436 * 10 8 6 14 14 C 1.53180 * 109.52490 * 185.57628 * 5 4 2 15 15 C 1.53172 * 109.03487 * 62.92539 * 14 5 4 16 16 C 1.53089 * 109.16692 * 56.98010 * 15 14 5 17 17 O 1.42910 * 109.41596 * 302.39446 * 16 15 14 18 18 C 1.42900 * 114.09495 * 61.15270 * 17 16 15 19 19 H 1.09000 * 109.46829 * 303.64754 * 1 2 3 20 20 H 1.09005 * 109.47323 * 63.63864 * 1 2 3 21 21 H 1.09000 * 109.47146 * 183.64333 * 1 2 3 22 22 H 1.08996 * 109.46847 * 240.00232 * 2 1 3 23 23 H 1.08996 * 109.47266 * 184.74887 * 3 2 1 24 24 H 1.09001 * 109.47266 * 304.74829 * 3 2 1 25 25 H 1.09006 * 109.47133 * 64.74561 * 3 2 1 26 26 H 1.00909 * 110.99906 * 234.12912 * 4 2 1 27 27 H 0.96996 * 120.00599 * 180.02562 * 9 8 6 28 28 H 1.09003 * 109.54139 * 303.05608 * 14 5 4 29 29 H 1.09003 * 109.61848 * 182.83680 * 14 5 4 30 30 H 1.09002 * 109.52457 * 297.07532 * 15 14 5 31 31 H 1.08997 * 109.57237 * 176.91961 * 15 14 5 32 32 H 1.08993 * 109.48581 * 182.40689 * 16 15 14 33 33 H 1.09003 * 109.48685 * 62.37925 * 16 15 14 34 34 H 1.08995 * 109.48580 * 58.83104 * 18 17 16 35 35 H 1.09003 * 109.47546 * 178.86009 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.6411 -1.9766 0.8491 6 6 3.8824 -1.7302 0.0308 7 1 3.9845 -2.1817 -0.9449 8 6 4.8878 -0.9282 0.5279 9 7 5.7695 -0.3961 -0.2900 10 14 4.9976 -0.5975 2.3631 11 1 5.7308 -1.7074 3.0231 12 1 5.7202 0.6792 2.5937 13 1 3.6290 -0.5013 2.9314 14 6 3.0132 -2.7313 2.1290 15 6 1.7356 -3.0442 2.9138 16 6 0.7822 -3.8453 2.0233 17 8 0.5015 -3.1000 0.8367 18 6 1.6528 -2.8190 0.0383 19 1 -0.3633 0.5694 0.8555 20 1 -0.3634 0.4563 -0.9208 21 1 -0.3633 -1.0256 0.0653 22 1 1.8933 -0.5138 -0.8900 23 1 3.1267 1.4437 -0.0851 24 1 1.6089 1.9804 -0.8444 25 1 1.7478 1.9313 0.9295 26 1 2.6606 -0.1098 1.7170 27 1 6.4771 0.1678 0.0596 28 1 3.6731 -2.1134 2.7379 29 1 3.5198 -3.6614 1.8713 30 1 1.2561 -2.1130 3.2155 31 1 1.9849 -3.6290 3.7992 32 1 -0.1463 -4.0341 2.5621 33 1 1.2462 -4.7944 1.7552 34 1 2.1285 -3.7545 -0.2559 35 1 1.3515 -2.2683 -0.8529 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261110000.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:16 Heat of formation + Delta-G solvation = -33.999798 kcal Electronic energy + Delta-G solvation = -16015.334484 eV Core-core repulsion = 13627.828554 eV Total energy + Delta-G solvation = -2387.505930 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.05479 -35.90974 -33.39738 -32.05169 -30.61890 -27.49412 -26.29862 -25.05835 -24.53450 -21.46870 -19.71325 -18.91864 -16.64786 -15.92389 -15.24267 -14.82568 -14.35713 -13.84374 -13.57013 -13.37431 -12.80852 -12.50830 -12.08700 -11.98370 -11.70187 -11.38933 -11.18036 -10.93396 -10.76677 -10.37675 -10.34366 -10.16538 -9.83323 -9.61580 -9.58459 -9.22320 -8.52449 -8.28116 -7.07284 -6.28467 -4.22755 3.16131 3.25661 3.30927 4.24331 4.67076 5.02252 5.34056 5.60525 5.66895 5.79946 5.88254 6.00840 6.07220 6.07909 6.18424 6.31611 6.39151 6.44587 6.46312 6.55531 6.58621 6.71367 6.82386 6.87332 6.99872 7.04337 7.17467 7.28104 7.58544 7.96807 8.11730 8.52351 8.65410 8.80291 9.38618 10.84487 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025996 B = 0.017720 C = 0.013280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.815168 B = 1579.786553 C = 2107.887558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.088 3.912 3 C -0.159 4.159 4 N -0.675 5.675 5 C 0.179 3.821 6 C -0.547 4.547 7 H 0.073 0.927 8 C 0.084 3.916 9 N -0.878 5.878 10 Si 0.863 3.137 11 H -0.280 1.280 12 H -0.299 1.299 13 H -0.242 1.242 14 C -0.117 4.117 15 C -0.149 4.149 16 C 0.071 3.929 17 O -0.381 6.381 18 C 0.085 3.915 19 H 0.042 0.958 20 H 0.035 0.965 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.328 0.672 27 H 0.265 0.735 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.036 0.964 34 H 0.039 0.961 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.489 -1.845 3.855 8.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.023 4.023 3 C -0.217 4.217 4 N -0.311 5.311 5 C 0.089 3.911 6 C -0.586 4.586 7 H 0.091 0.909 8 C -0.121 4.121 9 N -0.514 5.514 10 Si 0.694 3.306 11 H -0.207 1.207 12 H -0.227 1.227 13 H -0.168 1.168 14 C -0.155 4.155 15 C -0.186 4.186 16 C -0.007 4.007 17 O -0.300 6.300 18 C 0.009 3.991 19 H 0.061 0.939 20 H 0.054 0.946 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.149 0.851 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.112 -1.948 3.917 9.217 hybrid contribution 1.632 0.441 0.712 1.834 sum -6.480 -1.508 4.629 8.105 Atomic orbital electron populations 1.21892 0.96459 1.02111 0.99061 1.21229 0.93641 0.92717 0.94671 1.22152 1.01921 0.97404 1.00263 1.61279 1.42735 1.05731 1.21312 1.19371 0.92178 0.87889 0.91703 1.21371 1.01722 1.31172 1.04350 0.90916 1.24908 0.95694 0.94260 0.97212 1.70008 1.16665 1.30233 1.34505 0.87550 0.78547 0.77002 0.87541 1.20737 1.22743 1.16775 1.22086 0.95783 1.00129 0.97529 1.22105 0.97777 1.01002 0.97761 1.22335 0.98310 0.93108 0.86911 1.87816 1.32724 1.74731 1.34694 1.22623 0.85896 0.97382 0.93233 0.93878 0.94558 0.91582 0.91538 0.92082 0.93372 0.93701 0.85090 0.92518 0.93136 0.92355 0.90491 0.93245 0.90488 0.94617 0.94253 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.31 37.16 0.35 -2.10 16 2 C 0.09 1.79 2.23 -67.71 -0.15 1.64 16 3 C -0.16 -3.08 9.01 37.16 0.33 -2.75 16 4 N -0.68 -14.73 5.25 -94.07 -0.49 -15.23 16 5 C 0.18 4.02 0.26 -132.61 -0.03 3.99 16 6 C -0.55 -14.42 7.55 -34.44 -0.26 -14.68 16 7 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 8 C 0.08 2.27 5.34 -17.82 -0.10 2.18 16 9 N -0.88 -25.45 13.96 55.43 0.77 -24.68 16 10 Si 0.86 20.61 23.27 -169.99 -3.96 16.66 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.30 -7.29 7.11 56.52 0.40 -6.88 16 13 H -0.24 -5.43 4.64 56.52 0.26 -5.17 16 14 C -0.12 -2.50 4.17 -26.55 -0.11 -2.61 16 15 C -0.15 -2.68 5.97 -26.60 -0.16 -2.84 16 16 C 0.07 1.19 6.84 37.20 0.25 1.44 16 17 O -0.38 -7.41 9.42 -35.23 -0.33 -7.75 16 18 C 0.09 1.77 4.75 37.20 0.18 1.94 16 19 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 20 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.07 1.23 6.19 -51.93 -0.32 0.91 16 22 H 0.07 1.50 5.60 -51.93 -0.29 1.21 16 23 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.33 7.48 3.81 -39.29 -0.15 7.33 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 28 H 0.05 1.13 2.62 -51.93 -0.14 0.99 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.08 1.47 7.76 -51.93 -0.40 1.06 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.80 5.99 -51.93 -0.31 1.49 16 LS Contribution 255.85 15.07 3.86 3.86 Total: -1.00 -27.77 255.85 -5.38 -33.15 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.53 Total: 7.78 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 0.30 Total: -13.79 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.28 Total: -39.91 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.33 Total: -7.75 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -3.96 Total: 16.66 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.77 -5.38 -33.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110000.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.853 kcal (2) G-P(sol) polarization free energy of solvation -27.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds