Wall clock time and date at job start Mon Mar 30 2020 02:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47143 * 2 1 4 4 N 1.46894 * 109.47004 * 119.99980 * 2 1 3 5 5 C 1.46898 * 111.00029 * 110.17763 * 4 2 1 6 6 C 1.50704 * 109.57370 * 65.41741 * 5 4 2 7 7 H 1.07994 * 120.00347 * 236.24008 * 6 5 4 8 8 C 1.37879 * 119.99726 * 56.23983 * 6 5 4 9 9 N 1.31513 * 120.00032 * 199.70342 * 8 6 5 10 10 Si 1.86801 * 120.00151 * 19.70898 * 8 6 5 11 11 H 1.48499 * 109.47282 * 84.29310 * 10 8 6 12 12 H 1.48498 * 109.47205 * 204.29299 * 10 8 6 13 13 H 1.48497 * 109.46760 * 324.29436 * 10 8 6 14 14 C 1.53180 * 109.52490 * 185.57628 * 5 4 2 15 15 C 1.53172 * 109.03487 * 62.92539 * 14 5 4 16 16 C 1.53089 * 109.16692 * 56.98010 * 15 14 5 17 17 O 1.42910 * 109.41596 * 302.39446 * 16 15 14 18 18 C 1.42900 * 114.09495 * 61.15270 * 17 16 15 19 19 H 1.09000 * 109.46829 * 303.64754 * 1 2 3 20 20 H 1.09005 * 109.47323 * 63.63864 * 1 2 3 21 21 H 1.09000 * 109.47146 * 183.64333 * 1 2 3 22 22 H 1.08996 * 109.46847 * 240.00232 * 2 1 3 23 23 H 1.08996 * 109.47266 * 184.74887 * 3 2 1 24 24 H 1.09001 * 109.47266 * 304.74829 * 3 2 1 25 25 H 1.09006 * 109.47133 * 64.74561 * 3 2 1 26 26 H 1.00909 * 110.99906 * 234.12912 * 4 2 1 27 27 H 0.96996 * 120.00599 * 180.02562 * 9 8 6 28 28 H 1.09003 * 109.54139 * 303.05608 * 14 5 4 29 29 H 1.09003 * 109.61848 * 182.83680 * 14 5 4 30 30 H 1.09002 * 109.52457 * 297.07532 * 15 14 5 31 31 H 1.08997 * 109.57237 * 176.91961 * 15 14 5 32 32 H 1.08993 * 109.48581 * 182.40689 * 16 15 14 33 33 H 1.09003 * 109.48685 * 62.37925 * 16 15 14 34 34 H 1.08995 * 109.48580 * 58.83104 * 18 17 16 35 35 H 1.09003 * 109.47546 * 178.86009 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.6411 -1.9766 0.8491 6 6 3.8824 -1.7302 0.0308 7 1 3.9845 -2.1817 -0.9449 8 6 4.8878 -0.9282 0.5279 9 7 5.7695 -0.3961 -0.2900 10 14 4.9976 -0.5975 2.3631 11 1 5.7308 -1.7074 3.0231 12 1 5.7202 0.6792 2.5937 13 1 3.6290 -0.5013 2.9314 14 6 3.0132 -2.7313 2.1290 15 6 1.7356 -3.0442 2.9138 16 6 0.7822 -3.8453 2.0233 17 8 0.5015 -3.1000 0.8367 18 6 1.6528 -2.8190 0.0383 19 1 -0.3633 0.5694 0.8555 20 1 -0.3634 0.4563 -0.9208 21 1 -0.3633 -1.0256 0.0653 22 1 1.8933 -0.5138 -0.8900 23 1 3.1267 1.4437 -0.0851 24 1 1.6089 1.9804 -0.8444 25 1 1.7478 1.9313 0.9295 26 1 2.6606 -0.1098 1.7170 27 1 6.4771 0.1678 0.0596 28 1 3.6731 -2.1134 2.7379 29 1 3.5198 -3.6614 1.8713 30 1 1.2561 -2.1130 3.2155 31 1 1.9849 -3.6290 3.7992 32 1 -0.1463 -4.0341 2.5621 33 1 1.2462 -4.7944 1.7552 34 1 2.1285 -3.7545 -0.2559 35 1 1.3515 -2.2683 -0.8529 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261110000.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:15 Heat of formation + Delta-G solvation = -53.783316 kcal Electronic energy + Delta-G solvation = -16016.192361 eV Core-core repulsion = 13627.828554 eV Total energy + Delta-G solvation = -2388.363807 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.69106 -37.52184 -35.14782 -33.93376 -32.23864 -29.13736 -27.87761 -26.96982 -26.11546 -23.08591 -21.33261 -20.62502 -18.62237 -17.63592 -16.82926 -16.49967 -16.06475 -15.43516 -15.27112 -15.03240 -14.64351 -14.20684 -13.73029 -13.57291 -13.27542 -12.87994 -12.81590 -12.70357 -12.54303 -12.04697 -11.96925 -11.87939 -11.50437 -11.33223 -11.22891 -10.84722 -10.57425 -9.92647 -8.87985 -8.40823 -6.37339 1.24892 1.29784 1.38321 2.22591 2.94752 3.18543 3.65818 4.14929 4.18527 4.23315 4.32581 4.43529 4.47437 4.57266 4.69884 4.78995 4.83815 4.94352 4.99322 5.06268 5.09186 5.12195 5.25418 5.28409 5.34938 5.44932 5.57758 5.60573 5.78293 6.08779 6.37273 6.65666 6.75512 6.83784 7.26742 8.75839 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025996 B = 0.017720 C = 0.013280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.815168 B = 1579.786553 C = 2107.887558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.083 3.917 3 C -0.153 4.153 4 N -0.667 5.667 5 C 0.177 3.823 6 C -0.545 4.545 7 H 0.030 0.970 8 C 0.038 3.962 9 N -0.925 5.925 10 Si 0.919 3.081 11 H -0.279 1.279 12 H -0.306 1.306 13 H -0.216 1.216 14 C -0.123 4.123 15 C -0.141 4.141 16 C 0.063 3.937 17 O -0.385 6.385 18 C 0.094 3.906 19 H 0.053 0.947 20 H 0.055 0.945 21 H 0.058 0.942 22 H 0.037 0.963 23 H 0.026 0.974 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.320 0.680 27 H 0.264 0.736 28 H 0.041 0.959 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.047 0.953 34 H 0.037 0.963 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.504 -2.084 5.801 11.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.027 4.027 3 C -0.211 4.211 4 N -0.301 5.301 5 C 0.087 3.913 6 C -0.584 4.584 7 H 0.049 0.951 8 C -0.163 4.163 9 N -0.564 5.564 10 Si 0.748 3.252 11 H -0.206 1.206 12 H -0.235 1.235 13 H -0.141 1.141 14 C -0.161 4.161 15 C -0.179 4.179 16 C -0.013 4.013 17 O -0.303 6.303 18 C 0.017 3.983 19 H 0.072 0.928 20 H 0.074 0.926 21 H 0.077 0.923 22 H 0.055 0.945 23 H 0.045 0.955 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.140 0.860 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.160 -2.204 5.869 11.938 hybrid contribution 2.246 0.473 0.008 2.296 sum -7.914 -1.732 5.876 10.008 Atomic orbital electron populations 1.21746 0.93804 1.02061 1.00597 1.21328 0.95605 0.92838 0.92920 1.22086 0.99671 0.97203 1.02181 1.61388 1.41739 1.05370 1.21645 1.19363 0.90798 0.88870 0.92299 1.21600 1.03464 1.30191 1.03145 0.95127 1.25569 0.95331 0.94218 1.01143 1.70134 1.17874 1.31838 1.36517 0.86633 0.79623 0.76343 0.82576 1.20569 1.23468 1.14068 1.22068 0.97529 0.99549 0.96956 1.22060 0.95890 1.01443 0.98500 1.22622 0.99898 0.92930 0.85861 1.87813 1.31705 1.75212 1.35611 1.22370 0.86027 0.96817 0.93054 0.92808 0.92576 0.92342 0.94515 0.95502 0.91177 0.91954 0.85976 0.92637 0.94102 0.92640 0.91138 0.90234 0.87186 0.93482 0.94517 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.11 9.31 71.98 0.67 -3.44 16 2 C 0.08 3.32 2.23 44.92 0.10 3.42 16 3 C -0.15 -5.77 9.01 71.98 0.65 -5.12 16 4 N -0.67 -28.18 5.25 -451.53 -2.37 -30.55 16 5 C 0.18 7.87 0.26 2.87 0.00 7.87 16 6 C -0.54 -29.51 7.55 25.60 0.19 -29.32 16 7 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 8 C 0.04 2.09 5.34 84.66 0.45 2.55 16 9 N -0.93 -55.61 13.96 21.45 0.30 -55.31 16 10 Si 0.92 42.71 23.27 68.60 1.60 44.30 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.31 -14.47 7.11 99.48 0.71 -13.76 16 13 H -0.22 -9.09 4.64 99.48 0.46 -8.62 16 14 C -0.12 -4.99 4.17 30.71 0.13 -4.86 16 15 C -0.14 -4.56 5.97 30.68 0.18 -4.38 16 16 C 0.06 1.89 6.84 72.01 0.49 2.39 16 17 O -0.38 -14.00 9.42 -148.98 -1.40 -15.40 16 18 C 0.09 3.85 4.75 72.01 0.34 4.20 16 19 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 20 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 21 H 0.06 2.03 6.19 -2.39 -0.01 2.02 16 22 H 0.04 1.69 5.60 -2.39 -0.01 1.67 16 23 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 26 H 0.32 14.09 3.81 -89.69 -0.34 13.75 16 27 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 28 H 0.04 1.73 2.62 -2.39 -0.01 1.72 16 29 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.07 2.40 7.76 -2.39 -0.02 2.38 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 35 H 0.08 3.29 5.99 -2.39 -0.01 3.28 16 Total: -1.00 -60.54 255.85 1.81 -58.72 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.48 Total: 24.93 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: 3.21 Total: -26.70 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -2.07 Total: -85.86 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -1.40 Total: -15.40 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.60 Total: 44.30 kcal Total: -60.54 1.81 -58.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110000.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.941 kcal (2) G-P(sol) polarization free energy of solvation -60.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds