Wall clock time and date at job start Mon Mar 30 2020 04:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99956 * 2 1 4 4 C 1.50692 * 109.61708 * 54.81930 * 3 2 1 5 5 H 1.08000 * 120.00255 * 235.77936 * 4 3 2 6 6 C 1.37877 * 119.99886 * 55.78387 * 4 3 2 7 7 N 1.31509 * 120.00052 * 5.57073 * 6 4 3 8 8 Si 1.86802 * 119.99795 * 185.56959 * 6 4 3 9 9 H 1.48503 * 109.47117 * 89.99998 * 8 6 4 10 10 H 1.48500 * 109.47160 * 209.99489 * 8 6 4 11 11 H 1.48497 * 109.47378 * 330.00195 * 8 6 4 12 12 C 1.53186 * 109.53839 * 294.59847 * 3 2 1 13 13 C 1.53088 * 109.16281 * 297.11541 * 12 3 2 14 14 H 1.08997 * 109.48407 * 62.37827 * 13 12 3 15 15 C 1.53002 * 109.47728 * 182.41148 * 13 12 3 16 16 O 1.42900 * 109.41580 * 302.39036 * 13 12 3 17 17 C 1.42905 * 114.09529 * 61.16123 * 16 13 12 18 18 H 1.08994 * 109.48946 * 58.83632 * 17 16 13 19 19 C 1.53002 * 109.47753 * 178.85985 * 17 16 13 20 20 C 1.53087 * 109.41686 * 298.83936 * 17 16 13 21 21 H 1.09000 * 109.47335 * 61.62474 * 1 2 3 22 22 H 1.09001 * 109.47201 * 181.62942 * 1 2 3 23 23 H 1.09000 * 109.46876 * 301.62287 * 1 2 3 24 24 H 1.00902 * 111.00087 * 123.95321 * 2 1 3 25 25 H 0.97006 * 119.99797 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.51801 * 177.20823 * 12 3 2 27 27 H 1.08998 * 109.51974 * 57.02159 * 12 3 2 28 28 H 1.09001 * 109.46901 * 179.97438 * 15 13 12 29 29 H 1.08995 * 109.47156 * 299.93852 * 15 13 12 30 30 H 1.08997 * 109.47258 * 59.94455 * 15 13 12 31 31 H 1.09002 * 109.46948 * 179.97438 * 19 17 16 32 32 H 1.09004 * 109.47483 * 299.93987 * 19 17 16 33 33 H 1.08997 * 109.47299 * 59.94403 * 19 17 16 34 34 H 1.08998 * 109.52720 * 177.51782 * 20 17 16 35 35 H 1.09000 * 109.52451 * 297.70746 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.4132 2.1369 1.1602 5 1 0.8870 3.0638 0.9860 6 6 1.5524 1.6539 2.4441 7 7 2.2854 0.5853 2.6688 8 14 0.6999 2.5174 3.8643 9 1 -0.6524 1.9350 4.0576 10 1 1.4979 2.3376 5.1037 11 1 0.5763 3.9657 3.5607 12 6 1.6180 2.0651 -1.3126 13 6 2.2785 1.3262 -2.4794 14 1 1.8998 0.3052 -2.5242 15 6 1.9554 2.0484 -3.7890 16 8 3.6941 1.3015 -2.2857 17 6 4.1086 0.6238 -1.0977 18 1 3.7541 -0.4065 -1.1243 19 6 5.6361 0.6357 -1.0102 20 6 3.5217 1.3344 0.1246 21 1 -0.3634 0.4884 -0.9042 22 1 -0.3634 -1.0273 0.0292 23 1 -0.3633 0.5388 0.8751 24 1 1.8306 -0.5261 0.7814 25 1 2.3830 0.2453 3.5720 26 1 1.9657 3.0979 -1.2918 27 1 0.5352 2.0467 -1.4360 28 1 2.4261 1.5225 -4.6196 29 1 0.8757 2.0672 -3.9367 30 1 2.3338 3.0696 -3.7438 31 1 5.9521 0.1192 -0.1038 32 1 6.0539 0.1297 -1.8806 33 1 5.9905 1.6661 -0.9840 34 1 3.8003 0.7936 1.0291 35 1 3.9078 2.3525 0.1744 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261149107.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:17 Heat of formation + Delta-G solvation = -59.017370 kcal Electronic energy + Delta-G solvation = -15746.218102 eV Core-core repulsion = 13357.627329 eV Total energy + Delta-G solvation = -2388.590773 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.86797 -35.40088 -32.89982 -31.71149 -30.43303 -28.55704 -25.57134 -25.23571 -23.41020 -21.00500 -20.67073 -18.31481 -16.32825 -15.52400 -14.90837 -14.64023 -14.28594 -13.73884 -13.26783 -12.75008 -12.55350 -12.24696 -11.98438 -11.57483 -11.44607 -11.29455 -11.03998 -10.97900 -10.86293 -10.68409 -10.33013 -10.13719 -9.97179 -9.82860 -9.15914 -9.04251 -8.68814 -8.21975 -6.96125 -6.02863 -4.20586 3.21060 3.29228 3.32544 4.32360 4.56408 5.11791 5.66171 5.79982 5.86498 5.95848 5.97537 6.03711 6.20625 6.32225 6.41284 6.44768 6.50998 6.54835 6.63487 6.69988 6.73620 6.82899 6.97056 7.09649 7.17433 7.31191 7.55647 7.71855 7.83263 8.19474 8.29824 8.64832 8.86723 9.09244 9.48916 10.89335 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.033722 B = 0.011976 C = 0.010451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.122365 B = 2337.436194 C = 2678.597231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.689 5.689 3 C 0.231 3.769 4 C -0.531 4.531 5 H 0.053 0.947 6 C 0.070 3.930 7 N -0.892 5.892 8 Si 0.889 3.111 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.125 4.125 13 C 0.095 3.905 14 H 0.060 0.940 15 C -0.143 4.143 16 O -0.395 6.395 17 C 0.089 3.911 18 H 0.057 0.943 19 C -0.140 4.140 20 C -0.123 4.123 21 H 0.039 0.961 22 H 0.031 0.969 23 H 0.030 0.970 24 H 0.353 0.647 25 H 0.263 0.737 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.771 -0.567 -5.930 6.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.322 5.322 3 C 0.141 3.859 4 C -0.570 4.570 5 H 0.071 0.929 6 C -0.132 4.132 7 N -0.531 5.531 8 Si 0.717 3.283 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.163 4.163 13 C 0.038 3.962 14 H 0.078 0.922 15 C -0.200 4.200 16 O -0.315 6.315 17 C 0.032 3.968 18 H 0.075 0.925 19 C -0.198 4.198 20 C -0.162 4.162 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.173 0.827 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.021 -0.673 -6.589 6.702 hybrid contribution -0.933 0.711 2.089 2.396 sum 0.088 0.037 -4.500 4.501 Atomic orbital electron populations 1.21851 0.91295 0.97894 0.99697 1.61033 1.05688 1.15883 1.49593 1.18456 0.90992 0.86172 0.90255 1.21728 1.35168 1.08326 0.91826 0.92910 1.24940 0.94575 0.95131 0.98538 1.69684 1.38497 1.23541 1.21410 0.86629 0.79607 0.80111 0.81909 1.20742 1.21199 1.19994 1.22189 0.99263 0.98837 0.96061 1.21912 0.81549 0.98865 0.93903 0.92201 1.21784 1.00633 1.00721 0.96847 1.87694 1.22156 1.78359 1.43311 1.22119 0.93132 0.95832 0.85718 0.92511 1.21756 0.95291 1.01735 1.00971 1.22168 0.97070 0.99449 0.97511 0.94229 0.95047 0.95174 0.82667 0.92659 0.92892 0.92717 0.92962 0.91988 0.92625 0.91677 0.93322 0.92761 0.88778 0.93683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.93 10.06 60.07 0.60 1.54 16 2 N -0.69 -15.89 5.15 -108.17 -0.56 -16.45 16 3 C 0.23 5.50 0.27 -132.57 -0.04 5.46 16 4 C -0.53 -13.92 6.52 -34.44 -0.22 -14.15 16 5 H 0.05 1.42 7.75 -52.49 -0.41 1.02 16 6 C 0.07 1.82 4.94 -17.82 -0.09 1.74 16 7 N -0.89 -23.41 9.75 55.43 0.54 -22.87 16 8 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 C -0.13 -2.70 3.99 -26.59 -0.11 -2.81 16 13 C 0.10 1.87 3.10 -26.68 -0.08 1.79 16 14 H 0.06 1.22 7.75 -51.93 -0.40 0.82 16 15 C -0.14 -2.28 9.56 37.16 0.36 -1.93 16 16 O -0.39 -8.26 10.05 -35.23 -0.35 -8.61 16 17 C 0.09 1.84 3.10 -26.69 -0.08 1.76 16 18 H 0.06 1.21 7.75 -51.93 -0.40 0.81 16 19 C -0.14 -2.44 9.56 37.16 0.36 -2.09 16 20 C -0.12 -2.88 4.06 -26.59 -0.11 -2.99 16 21 H 0.04 0.80 6.47 -51.93 -0.34 0.46 16 22 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.03 0.71 6.66 -51.93 -0.35 0.37 16 24 H 0.35 8.75 6.83 -39.29 -0.27 8.48 16 25 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 26 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.05 1.15 6.45 -51.93 -0.33 0.82 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 2.37 6.32 -51.93 -0.33 2.04 16 35 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 268.54 15.07 4.05 4.05 Total: -1.00 -26.27 268.54 -6.52 -32.79 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.76 Total: 7.05 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 0.59 Total: -11.68 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: -0.02 Total: -39.31 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.35 Total: -8.61 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -26.27 -6.52 -32.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149107.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.227 kcal (2) G-P(sol) polarization free energy of solvation -26.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds