Wall clock time and date at job start Mon Mar 30 2020 04:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99956 * 2 1 4 4 C 1.50692 * 109.61708 * 54.81930 * 3 2 1 5 5 H 1.08000 * 120.00255 * 235.77936 * 4 3 2 6 6 C 1.37877 * 119.99886 * 55.78387 * 4 3 2 7 7 N 1.31509 * 120.00052 * 5.57073 * 6 4 3 8 8 Si 1.86802 * 119.99795 * 185.56959 * 6 4 3 9 9 H 1.48503 * 109.47117 * 89.99998 * 8 6 4 10 10 H 1.48500 * 109.47160 * 209.99489 * 8 6 4 11 11 H 1.48497 * 109.47378 * 330.00195 * 8 6 4 12 12 C 1.53186 * 109.53839 * 294.59847 * 3 2 1 13 13 C 1.53088 * 109.16281 * 297.11541 * 12 3 2 14 14 H 1.08997 * 109.48407 * 62.37827 * 13 12 3 15 15 C 1.53002 * 109.47728 * 182.41148 * 13 12 3 16 16 O 1.42900 * 109.41580 * 302.39036 * 13 12 3 17 17 C 1.42905 * 114.09529 * 61.16123 * 16 13 12 18 18 H 1.08994 * 109.48946 * 58.83632 * 17 16 13 19 19 C 1.53002 * 109.47753 * 178.85985 * 17 16 13 20 20 C 1.53087 * 109.41686 * 298.83936 * 17 16 13 21 21 H 1.09000 * 109.47335 * 61.62474 * 1 2 3 22 22 H 1.09001 * 109.47201 * 181.62942 * 1 2 3 23 23 H 1.09000 * 109.46876 * 301.62287 * 1 2 3 24 24 H 1.00902 * 111.00087 * 123.95321 * 2 1 3 25 25 H 0.97006 * 119.99797 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.51801 * 177.20823 * 12 3 2 27 27 H 1.08998 * 109.51974 * 57.02159 * 12 3 2 28 28 H 1.09001 * 109.46901 * 179.97438 * 15 13 12 29 29 H 1.08995 * 109.47156 * 299.93852 * 15 13 12 30 30 H 1.08997 * 109.47258 * 59.94455 * 15 13 12 31 31 H 1.09002 * 109.46948 * 179.97438 * 19 17 16 32 32 H 1.09004 * 109.47483 * 299.93987 * 19 17 16 33 33 H 1.08997 * 109.47299 * 59.94403 * 19 17 16 34 34 H 1.08998 * 109.52720 * 177.51782 * 20 17 16 35 35 H 1.09000 * 109.52451 * 297.70746 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.4132 2.1369 1.1602 5 1 0.8870 3.0638 0.9860 6 6 1.5524 1.6539 2.4441 7 7 2.2854 0.5853 2.6688 8 14 0.6999 2.5174 3.8643 9 1 -0.6524 1.9350 4.0576 10 1 1.4979 2.3376 5.1037 11 1 0.5763 3.9657 3.5607 12 6 1.6180 2.0651 -1.3126 13 6 2.2785 1.3262 -2.4794 14 1 1.8998 0.3052 -2.5242 15 6 1.9554 2.0484 -3.7890 16 8 3.6941 1.3015 -2.2857 17 6 4.1086 0.6238 -1.0977 18 1 3.7541 -0.4065 -1.1243 19 6 5.6361 0.6357 -1.0102 20 6 3.5217 1.3344 0.1246 21 1 -0.3634 0.4884 -0.9042 22 1 -0.3634 -1.0273 0.0292 23 1 -0.3633 0.5388 0.8751 24 1 1.8306 -0.5261 0.7814 25 1 2.3830 0.2453 3.5720 26 1 1.9657 3.0979 -1.2918 27 1 0.5352 2.0467 -1.4360 28 1 2.4261 1.5225 -4.6196 29 1 0.8757 2.0672 -3.9367 30 1 2.3338 3.0696 -3.7438 31 1 5.9521 0.1192 -0.1038 32 1 6.0539 0.1297 -1.8806 33 1 5.9905 1.6661 -0.9840 34 1 3.8003 0.7936 1.0291 35 1 3.9078 2.3525 0.1744 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261149107.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:17 Heat of formation + Delta-G solvation = -75.261346 kcal Electronic energy + Delta-G solvation = -15746.922494 eV Core-core repulsion = 13357.627329 eV Total energy + Delta-G solvation = -2389.295165 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.57860 -37.19304 -34.47894 -33.65465 -32.14767 -30.12227 -27.29134 -27.08123 -25.17406 -22.60870 -22.35597 -20.11130 -18.28651 -17.14447 -16.83864 -16.36062 -16.01565 -15.47341 -15.01675 -14.37957 -14.26013 -13.87775 -13.56490 -13.03345 -12.93375 -12.86259 -12.80570 -12.71954 -12.57714 -12.51871 -12.19647 -11.92534 -11.75227 -11.54153 -10.94562 -10.84882 -10.55869 -10.00373 -8.87482 -7.99947 -6.25938 1.33486 1.37798 1.44744 2.37635 3.02520 3.09545 4.07091 4.19325 4.31819 4.33571 4.53072 4.54494 4.60283 4.72676 4.84244 4.87004 4.96744 4.99135 5.05797 5.15428 5.19650 5.24647 5.30995 5.34998 5.41044 5.55770 5.64707 5.77339 5.91537 6.23516 6.64367 6.70632 6.91504 7.13753 7.46016 8.87072 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.033722 B = 0.011976 C = 0.010451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.122365 B = 2337.436194 C = 2678.597231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.682 5.682 3 C 0.222 3.778 4 C -0.549 4.549 5 H 0.037 0.963 6 C 0.036 3.964 7 N -0.902 5.902 8 Si 0.939 3.061 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.278 1.278 12 C -0.120 4.120 13 C 0.095 3.905 14 H 0.055 0.945 15 C -0.136 4.136 16 O -0.399 6.399 17 C 0.093 3.907 18 H 0.050 0.950 19 C -0.135 4.135 20 C -0.116 4.116 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.005 0.995 24 H 0.341 0.659 25 H 0.264 0.736 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.714 -0.810 -6.877 6.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.313 5.313 3 C 0.132 3.868 4 C -0.588 4.588 5 H 0.055 0.945 6 C -0.165 4.165 7 N -0.542 5.542 8 Si 0.766 3.234 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.204 1.204 12 C -0.158 4.158 13 C 0.037 3.963 14 H 0.073 0.927 15 C -0.193 4.193 16 O -0.320 6.320 17 C 0.035 3.965 18 H 0.068 0.932 19 C -0.192 4.192 20 C -0.155 4.155 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.023 0.977 24 H 0.161 0.839 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.961 -0.914 -7.548 7.663 hybrid contribution -0.941 0.789 2.398 2.694 sum 0.020 -0.124 -5.150 5.151 Atomic orbital electron populations 1.21858 0.90355 0.98994 0.99105 1.61059 1.06467 1.15185 1.48637 1.18544 0.91198 0.86407 0.90649 1.21925 1.35556 1.08146 0.93223 0.94513 1.25451 0.95053 0.95779 1.00184 1.69769 1.38720 1.24007 1.21676 0.85851 0.78801 0.78978 0.79724 1.20506 1.20865 1.20354 1.22113 0.99581 0.98144 0.96005 1.22015 0.80749 0.98721 0.94803 0.92723 1.21757 1.02112 1.00345 0.95084 1.87710 1.22936 1.78315 1.43015 1.22071 0.95085 0.94827 0.84469 0.93157 1.21723 0.92824 1.02237 1.02404 1.22022 0.97124 0.98226 0.98099 0.92975 0.92967 0.97687 0.83949 0.92659 0.94081 0.92450 0.91337 0.90080 0.92579 0.90864 0.91218 0.92731 0.90913 0.95583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.00 10.06 127.69 1.28 3.29 16 2 N -0.68 -31.19 5.15 -496.15 -2.55 -33.75 16 3 C 0.22 10.58 0.27 2.90 0.00 10.59 16 4 C -0.55 -29.11 6.52 25.60 0.17 -28.94 16 5 H 0.04 2.01 7.75 -2.91 -0.02 1.99 16 6 C 0.04 1.88 4.94 84.66 0.42 2.30 16 7 N -0.90 -47.57 9.75 21.45 0.21 -47.36 16 8 Si 0.94 42.69 29.54 68.60 2.03 44.72 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 C -0.12 -5.11 3.99 30.69 0.12 -4.99 16 13 C 0.09 3.55 3.10 30.62 0.10 3.64 16 14 H 0.05 2.12 7.75 -2.39 -0.02 2.10 16 15 C -0.14 -3.97 9.56 71.98 0.69 -3.28 16 16 O -0.40 -16.08 10.05 -148.98 -1.50 -17.57 16 17 C 0.09 3.74 3.10 30.62 0.10 3.84 16 18 H 0.05 2.10 7.75 -2.39 -0.02 2.08 16 19 C -0.13 -4.47 9.56 71.98 0.69 -3.78 16 20 C -0.12 -5.45 4.06 30.68 0.12 -5.32 16 21 H 0.05 2.04 6.47 -2.39 -0.02 2.03 16 22 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.00 0.22 6.66 -2.39 -0.02 0.20 16 24 H 0.34 16.94 6.83 -89.69 -0.61 16.33 16 25 H 0.26 13.43 8.31 -92.70 -0.77 12.66 16 26 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.06 2.37 6.45 -2.39 -0.02 2.35 16 28 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 3.72 6.32 -2.39 -0.02 3.70 16 35 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -54.83 268.54 2.31 -52.52 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.44 Total: 24.11 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 3.68 Total: -22.67 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -2.35 Total: -81.11 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -1.50 Total: -17.57 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -54.83 2.31 -52.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149107.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.737 kcal (2) G-P(sol) polarization free energy of solvation -54.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds