Wall clock time and date at job start Mon Mar 30 2020 04:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 110.99995 * 2 1 4 4 C 1.50700 * 109.54583 * 296.14397 * 3 2 1 5 5 H 1.08005 * 119.99793 * 144.72796 * 4 3 2 6 6 C 1.37878 * 119.99985 * 324.73561 * 4 3 2 7 7 N 1.31507 * 119.99684 * 174.57468 * 6 4 3 8 8 Si 1.86795 * 119.99745 * 354.57304 * 6 4 3 9 9 H 1.48502 * 109.47310 * 93.51835 * 8 6 4 10 10 H 1.48501 * 109.47359 * 213.51389 * 8 6 4 11 11 H 1.48491 * 109.47608 * 333.51853 * 8 6 4 12 12 C 1.53176 * 109.54593 * 56.32604 * 3 2 1 13 13 C 1.53103 * 109.16333 * 176.75816 * 12 3 2 14 14 H 1.08998 * 109.41414 * 62.50769 * 13 12 3 15 15 C 1.52997 * 109.48770 * 182.49608 * 13 12 3 16 16 O 1.42908 * 109.48198 * 302.52728 * 13 12 3 17 17 C 1.42897 * 114.10166 * 61.11119 * 16 13 12 18 18 H 1.09000 * 109.48247 * 58.81758 * 17 16 13 19 19 C 1.52996 * 109.49036 * 178.85333 * 17 16 13 20 20 C 1.53097 * 109.41056 * 298.83934 * 17 16 13 21 21 H 1.09001 * 109.46838 * 53.78925 * 1 2 3 22 22 H 1.08999 * 109.47240 * 173.78365 * 1 2 3 23 23 H 1.08998 * 109.47406 * 293.79134 * 1 2 3 24 24 H 1.00902 * 110.99769 * 123.95013 * 2 1 3 25 25 H 0.97004 * 120.00100 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.52424 * 296.75407 * 12 3 2 27 27 H 1.09006 * 109.52508 * 56.93938 * 12 3 2 28 28 H 1.08999 * 109.47071 * 180.02562 * 15 13 12 29 29 H 1.08999 * 109.47009 * 300.03137 * 15 13 12 30 30 H 1.08999 * 109.47170 * 60.02756 * 15 13 12 31 31 H 1.09007 * 109.46838 * 179.97438 * 19 17 16 32 32 H 1.08996 * 109.47094 * 299.94618 * 19 17 16 33 33 H 1.09001 * 109.47575 * 59.94524 * 19 17 16 34 34 H 1.09002 * 109.52233 * 297.70116 * 20 17 16 35 35 H 1.09001 * 109.57379 * 177.54697 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5919 2.0663 -1.2749 5 1 1.3577 3.1206 -1.2643 6 6 1.5217 1.3562 -2.4546 7 7 1.0677 1.9354 -3.5446 8 14 2.0713 -0.4283 -2.5047 9 1 0.9005 -1.3134 -2.2784 10 1 2.6673 -0.7257 -3.8319 11 1 3.0828 -0.6647 -1.4436 12 6 1.4319 2.1367 1.2013 13 6 2.0482 3.5377 1.2388 14 1 1.7642 4.0826 0.3385 15 6 1.5377 4.2870 2.4711 16 8 3.4719 3.4305 1.3018 17 6 4.0573 2.7665 0.1802 18 1 3.7996 3.3011 -0.7340 19 6 5.5784 2.7359 0.3419 20 6 3.5234 1.3338 0.1015 21 1 -0.3633 0.6071 -0.8292 22 1 -0.3634 -1.0216 -0.1113 23 1 -0.3634 0.4146 0.9403 24 1 1.8306 -0.5261 0.7814 25 1 1.0186 1.4360 -4.3747 26 1 0.3489 2.2161 1.1071 27 1 1.6805 1.6061 2.1205 28 1 1.9763 5.2845 2.4973 29 1 0.4519 4.3686 2.4228 30 1 1.8214 3.7417 3.3713 31 1 6.0246 2.2288 -0.5137 32 1 5.9584 3.7560 0.3980 33 1 5.8360 2.2015 1.2564 34 1 3.8156 0.7864 0.9977 35 1 3.9348 0.8385 -0.7780 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261149108.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:19 Heat of formation + Delta-G solvation = -47.548000 kcal Electronic energy + Delta-G solvation = -15858.442363 eV Core-core repulsion = 13470.348939 eV Total energy + Delta-G solvation = -2388.093424 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.25060 -35.88576 -33.05965 -31.96478 -30.87876 -28.73758 -25.92382 -25.08031 -24.11429 -21.17539 -20.59835 -18.98524 -16.23118 -15.73898 -15.32049 -14.97213 -14.57749 -13.80270 -13.32917 -12.92253 -12.81306 -12.39945 -12.31585 -11.96357 -11.73127 -11.64385 -11.49478 -11.22782 -10.82406 -10.30485 -10.18428 -10.02724 -9.99154 -9.85359 -9.62280 -9.02812 -8.58127 -8.38363 -7.17834 -5.97264 -4.07911 3.68400 3.72396 3.95142 4.38156 4.76993 5.07808 5.30921 5.51772 5.66325 5.77456 5.81441 5.86230 6.00346 6.12688 6.14742 6.17305 6.22503 6.29531 6.30792 6.36819 6.45654 6.51799 6.69749 6.73361 6.86949 6.89586 7.00830 7.19230 7.63711 7.82618 8.08030 8.27775 8.58970 8.96124 9.66503 11.09577 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.029649 B = 0.014517 C = 0.012664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.163366 B = 1928.343325 C = 2210.493426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.675 5.675 3 C 0.208 3.792 4 C -0.519 4.519 5 H 0.073 0.927 6 C 0.075 3.925 7 N -0.902 5.902 8 Si 0.968 3.032 9 H -0.300 1.300 10 H -0.347 1.347 11 H -0.267 1.267 12 C -0.156 4.156 13 C 0.097 3.903 14 H 0.067 0.933 15 C -0.141 4.141 16 O -0.392 6.392 17 C 0.097 3.903 18 H 0.072 0.928 19 C -0.141 4.141 20 C -0.131 4.131 21 H 0.085 0.915 22 H 0.044 0.956 23 H 0.014 0.986 24 H 0.320 0.680 25 H 0.262 0.738 26 H 0.065 0.935 27 H 0.041 0.959 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.036 0.964 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.771 -0.256 9.111 9.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.305 5.305 3 C 0.118 3.882 4 C -0.557 4.557 5 H 0.091 0.909 6 C -0.129 4.129 7 N -0.538 5.538 8 Si 0.808 3.192 9 H -0.228 1.228 10 H -0.281 1.281 11 H -0.194 1.194 12 C -0.195 4.195 13 C 0.039 3.961 14 H 0.085 0.915 15 C -0.199 4.199 16 O -0.312 6.312 17 C 0.039 3.961 18 H 0.090 0.910 19 C -0.198 4.198 20 C -0.170 4.170 21 H 0.104 0.896 22 H 0.063 0.937 23 H 0.033 0.967 24 H 0.137 0.863 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.854 -0.260 8.415 8.890 hybrid contribution -0.245 -0.848 0.560 1.045 sum 2.609 -1.108 8.976 9.413 Atomic orbital electron populations 1.22160 0.88586 1.00286 1.00941 1.60394 1.07849 1.16582 1.45715 1.19088 0.90456 0.84197 0.94437 1.20698 1.48388 0.96626 0.89952 0.90910 1.25145 0.92900 1.00009 0.94817 1.69996 1.45001 1.38108 1.00690 0.85331 0.79111 0.82929 0.71862 1.22818 1.28105 1.19363 1.22743 1.00830 0.97156 0.98777 1.21916 0.80824 0.95557 0.97834 0.91517 1.21774 1.00339 1.00077 0.97695 1.87708 1.20005 1.78629 1.44886 1.21964 0.91707 0.93010 0.89407 0.90986 1.21762 0.94733 1.01603 1.01715 1.22438 0.98173 0.96032 1.00364 0.89586 0.93686 0.96704 0.86322 0.92947 0.91605 0.94043 0.92610 0.91741 0.92772 0.91532 0.92687 0.92809 0.94515 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 8.63 60.07 0.52 1.11 16 2 N -0.67 -14.28 2.25 -108.18 -0.24 -14.52 16 3 C 0.21 4.58 0.31 -132.57 -0.04 4.54 16 4 C -0.52 -13.69 6.27 -34.44 -0.22 -13.91 16 5 H 0.07 2.10 6.55 -52.48 -0.34 1.76 16 6 C 0.07 2.10 4.78 -17.82 -0.09 2.02 16 7 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 8 Si 0.97 24.63 23.43 -169.99 -3.98 20.65 16 9 H -0.30 -7.65 6.96 56.52 0.39 -7.26 16 10 H -0.35 -9.29 7.11 56.52 0.40 -8.89 16 11 H -0.27 -6.41 5.01 56.52 0.28 -6.13 16 12 C -0.16 -3.07 3.73 -26.59 -0.10 -3.17 16 13 C 0.10 1.86 3.04 -26.68 -0.08 1.78 16 14 H 0.07 1.42 6.53 -51.93 -0.34 1.08 16 15 C -0.14 -2.19 9.57 37.16 0.36 -1.83 16 16 O -0.39 -7.81 10.05 -35.23 -0.35 -8.17 16 17 C 0.10 1.93 3.04 -26.68 -0.08 1.84 16 18 H 0.07 1.60 7.38 -51.93 -0.38 1.21 16 19 C -0.14 -2.28 9.56 37.16 0.36 -1.93 16 20 C -0.13 -2.75 4.00 -26.59 -0.11 -2.86 16 21 H 0.09 1.99 6.40 -51.93 -0.33 1.66 16 22 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 23 H 0.01 0.26 6.69 -51.93 -0.35 -0.09 16 24 H 0.32 5.99 8.77 -39.29 -0.34 5.64 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.07 1.31 6.70 -51.93 -0.35 0.96 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.64 5.72 -51.93 -0.30 1.35 16 LS Contribution 258.01 15.07 3.89 3.89 Total: -1.00 -29.61 258.01 -5.20 -34.81 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.80 Total: 2.18 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 0.52 Total: -12.40 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.53 Total: -40.96 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.35 Total: -8.17 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -3.98 Total: 20.65 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.61 -5.20 -34.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149108.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.734 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds