Wall clock time and date at job start Mon Mar 30 2020 02:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47245 * 2 1 4 4 N 1.46903 * 109.46918 * 120.00022 * 2 1 3 5 5 C 1.46910 * 110.99719 * 105.25827 * 4 2 1 6 6 C 1.50694 * 109.54153 * 306.11252 * 5 4 2 7 7 H 1.08003 * 120.00235 * 117.16867 * 6 5 4 8 8 C 1.37883 * 120.00337 * 297.15918 * 6 5 4 9 9 N 1.31514 * 119.99558 * 4.70401 * 8 6 5 10 10 Si 1.86795 * 120.00089 * 184.69794 * 8 6 5 11 11 H 1.48503 * 109.47005 * 90.00332 * 10 8 6 12 12 H 1.48501 * 109.47183 * 210.00305 * 10 8 6 13 13 H 1.48500 * 109.47396 * 330.00435 * 10 8 6 14 14 C 1.53178 * 109.54149 * 185.84626 * 5 4 2 15 15 C 1.53099 * 109.16353 * 297.11499 * 14 5 4 16 16 O 1.42902 * 109.41192 * 302.39268 * 15 14 5 17 17 C 1.42903 * 114.09925 * 61.15973 * 16 15 14 18 18 C 1.53092 * 109.41361 * 298.83683 * 17 16 15 19 19 H 1.08997 * 109.47345 * 187.61689 * 1 2 3 20 20 H 1.09000 * 109.46953 * 307.61945 * 1 2 3 21 21 H 1.08998 * 109.46873 * 67.61437 * 1 2 3 22 22 H 1.08999 * 109.46946 * 239.99660 * 2 1 3 23 23 H 1.09001 * 109.47228 * 179.97438 * 3 2 1 24 24 H 1.08995 * 109.47374 * 299.99443 * 3 2 1 25 25 H 1.08999 * 109.47426 * 59.99954 * 3 2 1 26 26 H 1.00896 * 110.99907 * 341.30676 * 4 2 1 27 27 H 0.96997 * 119.99636 * 185.05419 * 9 8 6 28 28 H 1.09003 * 109.52307 * 57.01472 * 14 5 4 29 29 H 1.08997 * 109.52456 * 177.21050 * 14 5 4 30 30 H 1.08991 * 109.47920 * 182.40907 * 15 14 5 31 31 H 1.09004 * 109.48835 * 62.37645 * 15 14 5 32 32 H 1.08999 * 109.47803 * 178.85986 * 17 16 15 33 33 H 1.08994 * 109.49211 * 58.82943 * 17 16 15 34 34 H 1.08990 * 109.52503 * 297.70669 * 18 17 16 35 35 H 1.09000 * 109.52462 * 177.51543 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.5354 -2.0265 0.8635 6 6 1.4828 -2.7991 0.1113 7 1 1.6672 -3.1140 -0.9053 8 6 0.2842 -3.1043 0.7207 9 7 0.0222 -2.6428 1.9240 10 14 -0.9673 -4.1732 -0.1627 11 1 -0.7208 -5.5999 0.1676 12 1 -2.3360 -3.7941 0.2708 13 1 -0.8399 -3.9755 -1.6290 14 6 2.9007 -2.7735 2.1499 15 6 4.0247 -2.0204 2.8665 16 8 5.1480 -1.8989 1.9916 17 6 4.8782 -1.1683 0.7934 18 6 3.7885 -1.8872 -0.0064 19 1 -0.3634 -1.0185 0.1362 20 1 -0.3633 0.6273 0.8140 21 1 -0.3633 0.3914 -0.9502 22 1 1.8933 -0.5139 -0.8899 23 1 3.1300 1.4424 0.0005 24 1 1.6768 1.9562 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.2989 -0.7502 1.9032 27 1 -0.7875 -2.9164 2.3826 28 1 2.0273 -2.8286 2.7997 29 1 3.2366 -3.7807 1.9034 30 1 4.3181 -2.5703 3.7606 31 1 3.6748 -1.0274 3.1488 32 1 5.7865 -1.1044 0.1943 33 1 4.5394 -0.1642 1.0483 34 1 4.1423 -2.8764 -0.2965 35 1 3.5500 -1.3085 -0.8988 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261157980.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:34 Heat of formation + Delta-G solvation = -70.663300 kcal Electronic energy + Delta-G solvation = -15931.876225 eV Core-core repulsion = 13542.780447 eV Total energy + Delta-G solvation = -2389.095778 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.40858 -37.65870 -34.77139 -33.27861 -31.63629 -29.31102 -27.83281 -27.43078 -24.26757 -23.92156 -21.20692 -19.99859 -18.43620 -16.94095 -16.58775 -16.50900 -15.75131 -15.59009 -15.36489 -14.64123 -14.04422 -13.82039 -13.78539 -13.16462 -13.08561 -12.88648 -12.79381 -12.62145 -12.34293 -12.05521 -11.91347 -11.80032 -11.61290 -11.18464 -10.90247 -10.73423 -10.49621 -10.05634 -8.73831 -7.94931 -6.18329 1.34010 1.40155 1.44724 2.40624 3.15178 3.24400 3.99888 4.32949 4.42708 4.51577 4.54702 4.67506 4.72612 4.74604 4.82296 4.89178 4.96039 4.99729 5.16592 5.18462 5.21496 5.31285 5.35382 5.51720 5.59895 5.69078 5.78047 5.90304 5.98940 6.33157 6.55412 6.78965 7.03225 7.26500 7.53957 8.91797 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027818 B = 0.014876 C = 0.011550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.301675 B = 1881.786338 C = 2423.631167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 C -0.126 4.126 4 N -0.671 5.671 5 C 0.228 3.772 6 C -0.542 4.542 7 H 0.034 0.966 8 C 0.050 3.950 9 N -0.894 5.894 10 Si 0.922 3.078 11 H -0.283 1.283 12 H -0.285 1.285 13 H -0.279 1.279 14 C -0.130 4.130 15 C 0.073 3.927 16 O -0.408 6.408 17 C 0.075 3.925 18 C -0.130 4.130 19 H 0.056 0.944 20 H 0.039 0.961 21 H 0.044 0.956 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.342 0.658 27 H 0.262 0.738 28 H 0.077 0.923 29 H 0.027 0.973 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.515 4.630 -1.069 5.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.017 4.017 3 C -0.184 4.184 4 N -0.303 5.303 5 C 0.138 3.862 6 C -0.582 4.582 7 H 0.052 0.948 8 C -0.151 4.151 9 N -0.534 5.534 10 Si 0.750 3.250 11 H -0.209 1.209 12 H -0.211 1.211 13 H -0.204 1.204 14 C -0.169 4.169 15 C -0.003 4.003 16 O -0.328 6.328 17 C -0.002 4.002 18 C -0.168 4.168 19 H 0.075 0.925 20 H 0.058 0.942 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.162 0.838 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.148 4.907 -0.929 6.492 hybrid contribution -2.189 -1.435 -0.759 2.726 sum 1.959 3.472 -1.688 4.329 Atomic orbital electron populations 1.22358 0.98145 1.02140 0.99513 1.21171 0.92329 0.94204 0.93978 1.21746 1.00641 0.95333 1.00649 1.61108 1.39631 1.19093 1.10462 1.18465 0.90224 0.86445 0.91024 1.21874 1.00497 1.36412 0.99391 0.94779 1.25189 0.98398 0.95872 0.95606 1.69770 1.26758 1.43437 1.13388 0.86134 0.79668 0.79935 0.79247 1.20938 1.21079 1.20402 1.22031 0.98207 0.97074 0.99556 1.22516 0.86275 0.99638 0.91856 1.87724 1.36133 1.76488 1.32408 1.22485 0.97748 0.94591 0.85359 1.22126 0.96783 0.99114 0.98779 0.92469 0.94156 0.93739 0.93477 0.92937 0.92452 0.93460 0.83818 0.92797 0.90481 0.95453 0.89614 0.93069 0.88849 0.92551 0.93991 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.60 8.93 71.98 0.64 -5.96 16 2 C 0.09 3.72 2.39 44.91 0.11 3.83 16 3 C -0.13 -4.05 9.51 71.98 0.68 -3.37 16 4 N -0.67 -28.77 4.72 -451.37 -2.13 -30.90 16 5 C 0.23 10.40 0.24 2.90 0.00 10.40 16 6 C -0.54 -27.53 6.30 25.60 0.16 -27.37 16 7 H 0.03 1.81 7.75 -2.91 -0.02 1.79 16 8 C 0.05 2.51 3.12 84.66 0.26 2.78 16 9 N -0.89 -45.11 9.31 21.45 0.20 -44.91 16 10 Si 0.92 41.72 29.52 68.60 2.03 43.75 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 14 C -0.13 -5.91 4.70 30.69 0.14 -5.77 16 15 C 0.07 2.88 6.68 72.02 0.48 3.37 16 16 O -0.41 -16.14 10.77 -148.98 -1.60 -17.74 16 17 C 0.07 2.71 6.68 72.01 0.48 3.19 16 18 C -0.13 -5.34 4.74 30.69 0.15 -5.19 16 19 H 0.06 2.66 4.70 -2.39 -0.01 2.65 16 20 H 0.04 1.56 8.13 -2.39 -0.02 1.54 16 21 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.05 2.03 5.56 -2.39 -0.01 2.01 16 23 H 0.05 1.63 8.07 -2.39 -0.02 1.61 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.34 16.15 6.37 -89.70 -0.57 15.58 16 27 H 0.26 12.96 8.32 -92.71 -0.77 12.19 16 28 H 0.08 3.80 6.17 -2.39 -0.01 3.79 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 31 H 0.05 2.01 7.75 -2.38 -0.02 1.99 16 32 H 0.09 2.87 8.14 -2.39 -0.02 2.86 16 33 H 0.06 2.04 7.67 -2.39 -0.02 2.02 16 34 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 2.33 6.43 -2.39 -0.02 2.32 16 Total: -1.00 -51.20 262.85 2.09 -49.11 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.49 Total: 24.80 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 3.11 Total: -24.10 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -1.93 Total: -75.82 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -1.60 Total: -17.74 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -51.20 2.09 -49.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157980.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.554 kcal (2) G-P(sol) polarization free energy of solvation -51.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds