Wall clock time and date at job start Mon Mar 30 2020 02:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99879 * 2 1 4 4 C 1.53007 * 109.47096 * 179.97438 * 3 2 1 5 5 C 1.50694 * 109.47106 * 59.99789 * 3 2 1 6 6 H 1.08000 * 119.99670 * 239.99578 * 5 3 2 7 7 C 1.37874 * 120.00478 * 60.00472 * 5 3 2 8 8 N 1.31518 * 119.99538 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00490 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46908 * 59.99488 * 9 7 5 11 11 H 1.48496 * 109.47330 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47070 * 300.00129 * 9 7 5 13 13 C 1.53001 * 109.46796 * 299.99614 * 3 2 1 14 14 H 1.08998 * 109.50328 * 59.92296 * 13 3 2 15 15 C 1.53120 * 109.53476 * 299.82366 * 13 3 2 16 16 C 1.53123 * 109.15816 * 182.38727 * 15 13 3 17 17 C 1.53034 * 109.27909 * 57.65334 * 16 15 13 18 18 N 1.46847 * 109.52616 * 300.82043 * 17 16 15 19 19 C 1.46848 * 111.19556 * 61.74332 * 18 17 16 20 20 H 1.09002 * 109.47190 * 60.00633 * 1 2 3 21 21 H 1.08999 * 109.46992 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47593 * 300.00350 * 1 2 3 23 23 H 1.08996 * 109.47198 * 179.97438 * 4 3 2 24 24 H 1.08998 * 109.46671 * 299.99896 * 4 3 2 25 25 H 1.08997 * 109.46821 * 59.99491 * 4 3 2 26 26 H 0.97007 * 119.99595 * 180.02562 * 8 7 5 27 27 H 1.08996 * 109.52597 * 302.28843 * 15 13 3 28 28 H 1.08996 * 109.52577 * 62.41952 * 15 13 3 29 29 H 1.08998 * 109.50042 * 177.59599 * 16 15 13 30 30 H 1.09004 * 109.50141 * 297.67612 * 16 15 13 31 31 H 1.09000 * 109.46034 * 180.80612 * 17 16 15 32 32 H 1.09004 * 109.46172 * 60.83746 * 17 16 15 33 33 H 1.00901 * 110.99839 * 297.64822 * 18 17 16 34 34 H 1.08995 * 109.46326 * 58.27554 * 19 18 17 35 35 H 1.08993 * 109.45984 * 178.25629 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 1.5655 2.0533 1.2304 6 1 1.0159 2.9777 1.1312 7 6 1.8603 1.5576 2.4827 8 7 2.5293 0.4317 2.6034 9 14 1.3097 2.4850 4.0079 10 1 -0.1707 2.6028 4.0080 11 1 1.7472 1.7478 5.2204 12 1 1.9141 3.8414 4.0076 13 6 1.5587 2.0646 -1.2493 14 1 0.4721 2.1498 -1.2506 15 6 2.0137 1.3082 -2.5004 16 6 1.6099 2.1050 -3.7441 17 6 2.2305 3.5021 -3.6726 18 7 1.7639 4.1848 -2.4590 19 6 2.1808 3.4629 -1.2501 20 1 -0.3634 0.5137 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 3.9788 2.1804 0.0002 24 1 3.8566 0.6440 0.8909 25 1 3.8574 0.6436 -0.8891 26 1 2.7364 0.0828 3.4845 27 1 3.0969 1.1889 -2.4802 28 1 1.5396 0.3271 -2.5255 29 1 1.9687 1.5927 -4.6368 30 1 0.5240 2.1902 -3.7850 31 1 1.9331 4.0768 -4.5497 32 1 3.3168 3.4160 -3.6460 33 1 0.7630 4.3114 -2.4775 34 1 3.2673 3.3771 -1.2349 35 1 1.8473 4.0091 -0.3679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261254217.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:37 Heat of formation + Delta-G solvation = -54.246465 kcal Electronic energy + Delta-G solvation = -15718.873826 eV Core-core repulsion = 13330.489935 eV Total energy + Delta-G solvation = -2388.383891 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.94488 -36.26490 -32.68676 -31.52719 -30.87754 -27.89541 -25.61503 -24.71652 -23.00601 -22.74962 -20.51664 -18.36763 -16.48945 -15.57477 -14.76790 -14.71213 -14.30836 -14.05116 -13.56383 -13.27851 -12.72132 -12.55184 -11.90852 -11.85834 -11.33133 -11.10431 -10.93729 -10.80690 -10.70484 -10.52408 -10.30652 -10.19826 -10.14912 -9.85639 -9.38878 -8.73387 -8.47331 -7.91138 -7.65550 -5.94664 -4.13804 3.29039 3.34707 3.37004 4.39404 4.80083 5.19146 5.22097 5.42710 5.50462 5.58936 5.85692 5.96230 5.97212 6.11233 6.24391 6.39419 6.45491 6.48605 6.64295 6.65910 6.73137 6.90540 6.98644 7.00872 7.05621 7.18226 7.46868 7.57067 7.77788 7.81787 8.09470 8.31271 8.81917 9.11130 9.59262 11.04474 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037702 B = 0.011218 C = 0.010058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.479298 B = 2495.297404 C = 2783.309451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.377 6.377 3 C 0.246 3.754 4 C -0.126 4.126 5 C -0.551 4.551 6 H 0.055 0.945 7 C 0.082 3.918 8 N -0.857 5.857 9 Si 0.883 3.117 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.276 1.276 13 C -0.137 4.137 14 H 0.055 0.945 15 C -0.112 4.112 16 C -0.157 4.157 17 C 0.058 3.942 18 N -0.691 5.691 19 C 0.069 3.931 20 H 0.011 0.989 21 H 0.048 0.952 22 H 0.041 0.959 23 H 0.041 0.959 24 H 0.087 0.913 25 H 0.016 0.984 26 H 0.259 0.741 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.332 0.668 34 H 0.070 0.930 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.568 2.824 -8.124 8.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.295 6.295 3 C 0.207 3.793 4 C -0.183 4.183 5 C -0.589 4.589 6 H 0.073 0.927 7 C -0.124 4.124 8 N -0.493 5.493 9 Si 0.710 3.290 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.201 1.201 13 C -0.157 4.157 14 H 0.073 0.927 15 C -0.150 4.150 16 C -0.196 4.196 17 C -0.072 4.072 18 N -0.319 5.319 19 C -0.060 4.060 20 H 0.029 0.971 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.106 0.894 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.149 0.851 34 H 0.089 0.911 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.811 2.976 -7.973 8.549 hybrid contribution -1.236 -0.155 0.875 1.522 sum -2.047 2.821 -7.097 7.907 Atomic orbital electron populations 1.22159 0.85052 0.98590 0.98617 1.87861 1.16529 1.30699 1.94444 1.18907 0.90739 0.80324 0.89315 1.21718 0.95887 0.99598 1.01144 1.21437 1.37798 1.08733 0.90940 0.92689 1.24969 0.94236 0.94439 0.98726 1.69984 1.37441 1.18759 1.23089 0.86827 0.79151 0.80178 0.82800 1.20350 1.21282 1.20128 1.22347 0.99544 0.97028 0.96795 0.92660 1.21609 1.01229 0.98567 0.93583 1.22288 1.00318 0.98112 0.98887 1.21960 1.00078 0.92250 0.92888 1.60844 1.18242 1.50251 1.02551 1.22097 1.00292 0.92184 0.91404 0.97107 0.93354 0.94062 0.93969 0.89409 0.96461 0.93064 0.91979 0.92257 0.92524 0.92816 0.91875 0.91384 0.85128 0.91141 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.18 10.31 101.05 1.04 2.23 16 2 O -0.38 -9.58 9.13 -35.23 -0.32 -9.91 16 3 C 0.25 5.89 0.19 -91.77 -0.02 5.87 16 4 C -0.13 -3.01 7.92 37.16 0.29 -2.72 16 5 C -0.55 -14.35 6.05 -34.44 -0.21 -14.56 16 6 H 0.05 1.42 6.71 -52.49 -0.35 1.07 16 7 C 0.08 2.19 5.24 -17.82 -0.09 2.10 16 8 N -0.86 -24.02 10.87 55.43 0.60 -23.41 16 9 Si 0.88 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C -0.14 -2.75 1.28 -90.54 -0.12 -2.87 16 14 H 0.06 1.15 6.54 -51.93 -0.34 0.81 16 15 C -0.11 -2.04 4.81 -26.61 -0.13 -2.16 16 16 C -0.16 -2.32 6.08 -26.65 -0.16 -2.48 16 17 C 0.06 0.84 6.55 -3.84 -0.03 0.81 16 18 N -0.69 -11.15 6.87 -113.82 -0.78 -11.93 16 19 C 0.07 1.30 5.24 -3.83 -0.02 1.28 16 20 H 0.01 0.22 6.42 -51.93 -0.33 -0.12 16 21 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.04 0.98 7.15 -51.93 -0.37 0.61 16 23 H 0.04 0.95 6.41 -51.93 -0.33 0.61 16 24 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 25 H 0.02 0.37 6.38 -51.93 -0.33 0.04 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.06 1.16 6.32 -51.93 -0.33 0.83 16 28 H 0.06 1.13 7.77 -51.93 -0.40 0.73 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.33 5.02 8.86 -39.29 -0.35 4.67 16 34 H 0.07 1.38 6.39 -51.93 -0.33 1.05 16 35 H 0.08 1.69 6.65 -51.93 -0.35 1.34 16 LS Contribution 262.07 15.07 3.95 3.95 Total: -1.00 -27.66 262.07 -6.39 -34.04 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.38 Total: 4.00 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 0.57 Total: -12.50 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.18 Total: -35.34 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.32 Total: -9.91 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.66 -6.39 -34.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254217.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.204 kcal (2) G-P(sol) polarization free energy of solvation -27.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds