Wall clock time and date at job start Mon Mar 30 2020 02:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99879 * 2 1 4 4 C 1.53007 * 109.47096 * 179.97438 * 3 2 1 5 5 C 1.50694 * 109.47106 * 59.99789 * 3 2 1 6 6 H 1.08000 * 119.99670 * 239.99578 * 5 3 2 7 7 C 1.37874 * 120.00478 * 60.00472 * 5 3 2 8 8 N 1.31518 * 119.99538 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00490 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46908 * 59.99488 * 9 7 5 11 11 H 1.48496 * 109.47330 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47070 * 300.00129 * 9 7 5 13 13 C 1.53001 * 109.46796 * 299.99614 * 3 2 1 14 14 H 1.08998 * 109.50328 * 59.92296 * 13 3 2 15 15 C 1.53120 * 109.53476 * 299.82366 * 13 3 2 16 16 C 1.53123 * 109.15816 * 182.38727 * 15 13 3 17 17 C 1.53034 * 109.27909 * 57.65334 * 16 15 13 18 18 N 1.46847 * 109.52616 * 300.82043 * 17 16 15 19 19 C 1.46848 * 111.19556 * 61.74332 * 18 17 16 20 20 H 1.09002 * 109.47190 * 60.00633 * 1 2 3 21 21 H 1.08999 * 109.46992 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47593 * 300.00350 * 1 2 3 23 23 H 1.08996 * 109.47198 * 179.97438 * 4 3 2 24 24 H 1.08998 * 109.46671 * 299.99896 * 4 3 2 25 25 H 1.08997 * 109.46821 * 59.99491 * 4 3 2 26 26 H 0.97007 * 119.99595 * 180.02562 * 8 7 5 27 27 H 1.08996 * 109.52597 * 302.28843 * 15 13 3 28 28 H 1.08996 * 109.52577 * 62.41952 * 15 13 3 29 29 H 1.08998 * 109.50042 * 177.59599 * 16 15 13 30 30 H 1.09004 * 109.50141 * 297.67612 * 16 15 13 31 31 H 1.09000 * 109.46034 * 180.80612 * 17 16 15 32 32 H 1.09004 * 109.46172 * 60.83746 * 17 16 15 33 33 H 1.00901 * 110.99839 * 297.64822 * 18 17 16 34 34 H 1.08995 * 109.46326 * 58.27554 * 19 18 17 35 35 H 1.08993 * 109.45984 * 178.25629 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 1.5655 2.0533 1.2304 6 1 1.0159 2.9777 1.1312 7 6 1.8603 1.5576 2.4827 8 7 2.5293 0.4317 2.6034 9 14 1.3097 2.4850 4.0079 10 1 -0.1707 2.6028 4.0080 11 1 1.7472 1.7478 5.2204 12 1 1.9141 3.8414 4.0076 13 6 1.5587 2.0646 -1.2493 14 1 0.4721 2.1498 -1.2506 15 6 2.0137 1.3082 -2.5004 16 6 1.6099 2.1050 -3.7441 17 6 2.2305 3.5021 -3.6726 18 7 1.7639 4.1848 -2.4590 19 6 2.1808 3.4629 -1.2501 20 1 -0.3634 0.5137 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 3.9788 2.1804 0.0002 24 1 3.8566 0.6440 0.8909 25 1 3.8574 0.6436 -0.8891 26 1 2.7364 0.0828 3.4845 27 1 3.0969 1.1889 -2.4802 28 1 1.5396 0.3271 -2.5255 29 1 1.9687 1.5927 -4.6368 30 1 0.5240 2.1902 -3.7850 31 1 1.9331 4.0768 -4.5497 32 1 3.3168 3.4160 -3.6460 33 1 0.7630 4.3114 -2.4775 34 1 3.2673 3.3771 -1.2349 35 1 1.8473 4.0091 -0.3679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254217.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:35 Heat of formation + Delta-G solvation = -73.110085 kcal Electronic energy + Delta-G solvation = -15719.691814 eV Core-core repulsion = 13330.489935 eV Total energy + Delta-G solvation = -2389.201879 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.52475 -37.92449 -34.65361 -33.20573 -32.27291 -29.58920 -27.57360 -26.57791 -24.49435 -24.24994 -21.95866 -20.06125 -18.44627 -17.11724 -16.55624 -16.39337 -15.89628 -15.53966 -15.32876 -15.00229 -14.29920 -13.99075 -13.57532 -13.46740 -13.06898 -12.78689 -12.75211 -12.48554 -12.39245 -12.14330 -12.01541 -11.97074 -11.66088 -11.58316 -11.04724 -10.61038 -10.46844 -9.69894 -9.12056 -7.97927 -6.22321 1.40932 1.42506 1.48670 2.43157 3.17871 3.51560 3.73337 3.93171 4.12483 4.22944 4.37338 4.55043 4.64051 4.68601 4.77138 4.86604 4.89311 5.04560 5.07081 5.12476 5.14026 5.15067 5.25116 5.33027 5.44349 5.49415 5.59755 5.73556 6.13821 6.18287 6.31967 6.58149 6.81773 7.20315 7.55137 8.99499 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037702 B = 0.011218 C = 0.010058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.479298 B = 2495.297404 C = 2783.309451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.402 6.402 3 C 0.236 3.764 4 C -0.119 4.119 5 C -0.555 4.555 6 H 0.051 0.949 7 C 0.037 3.963 8 N -0.886 5.886 9 Si 0.937 3.063 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.271 1.271 13 C -0.127 4.127 14 H 0.048 0.952 15 C -0.109 4.109 16 C -0.148 4.148 17 C 0.058 3.942 18 N -0.689 5.689 19 C 0.080 3.920 20 H 0.029 0.971 21 H 0.067 0.933 22 H 0.019 0.981 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.028 0.972 26 H 0.256 0.744 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.341 0.659 34 H 0.062 0.938 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.151 3.729 -9.614 10.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.321 6.321 3 C 0.198 3.802 4 C -0.176 4.176 5 C -0.593 4.593 6 H 0.070 0.930 7 C -0.166 4.166 8 N -0.523 5.523 9 Si 0.764 3.236 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.196 1.196 13 C -0.147 4.147 14 H 0.066 0.934 15 C -0.146 4.146 16 C -0.187 4.187 17 C -0.072 4.072 18 N -0.317 5.317 19 C -0.049 4.049 20 H 0.048 0.952 21 H 0.086 0.914 22 H 0.037 0.963 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.158 0.842 34 H 0.080 0.920 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.407 3.896 -9.475 10.341 hybrid contribution -1.067 -0.445 1.297 1.738 sum -2.473 3.451 -8.178 9.214 Atomic orbital electron populations 1.22211 0.83674 0.99838 0.98388 1.87808 1.18145 1.31555 1.94632 1.19020 0.90586 0.80138 0.90476 1.21610 0.96306 0.99574 1.00111 1.21723 1.37038 1.08541 0.92012 0.93048 1.25614 0.94506 0.95153 1.01292 1.70124 1.38791 1.20144 1.23279 0.85955 0.78716 0.79167 0.79783 1.20087 1.21359 1.19586 1.22175 0.98980 0.97493 0.96059 0.93386 1.21542 1.00563 0.98258 0.94272 1.22221 1.00777 0.97898 0.97788 1.22068 0.99988 0.92243 0.92855 1.60797 1.18955 1.49794 1.02158 1.21840 0.99519 0.91366 0.92224 0.95221 0.91434 0.96254 0.93377 0.92523 0.95261 0.93434 0.92704 0.93489 0.90295 0.92178 0.88937 0.91592 0.84217 0.91988 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.46 10.31 113.37 1.17 3.63 16 2 O -0.40 -20.49 9.13 -148.98 -1.36 -21.85 16 3 C 0.24 11.32 0.19 -11.54 0.00 11.32 16 4 C -0.12 -5.70 7.92 71.98 0.57 -5.13 16 5 C -0.56 -29.07 6.05 25.60 0.15 -28.92 16 6 H 0.05 2.67 6.71 -2.91 -0.02 2.65 16 7 C 0.04 1.99 5.24 84.65 0.44 2.43 16 8 N -0.89 -50.57 10.87 21.45 0.23 -50.34 16 9 Si 0.94 42.93 29.54 68.60 2.03 44.96 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 C -0.13 -4.97 1.28 -10.74 -0.01 -4.98 16 14 H 0.05 1.94 6.54 -2.39 -0.02 1.93 16 15 C -0.11 -3.74 4.81 30.68 0.15 -3.60 16 16 C -0.15 -3.87 6.08 30.65 0.19 -3.68 16 17 C 0.06 1.46 6.55 86.32 0.57 2.03 16 18 N -0.69 -20.49 6.87 -514.01 -3.53 -24.01 16 19 C 0.08 2.94 5.24 86.33 0.45 3.39 16 20 H 0.03 1.17 6.42 -2.39 -0.02 1.15 16 21 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 22 H 0.02 0.91 7.15 -2.39 -0.02 0.89 16 23 H 0.05 2.18 6.41 -2.39 -0.02 2.17 16 24 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 25 H 0.03 1.28 6.38 -2.39 -0.02 1.27 16 26 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 27 H 0.05 1.95 6.32 -2.39 -0.02 1.94 16 28 H 0.05 1.72 7.77 -2.39 -0.02 1.70 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 30 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.34 9.34 8.86 -89.69 -0.79 8.55 16 34 H 0.06 2.37 6.39 -2.39 -0.02 2.35 16 35 H 0.06 2.54 6.65 -2.39 -0.02 2.53 16 Total: -1.00 -58.58 262.07 1.32 -57.25 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.28 Total: 17.51 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 3.67 Total: -23.51 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -3.30 Total: -74.35 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -1.36 Total: -21.85 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -58.58 1.32 -57.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254217.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.859 kcal (2) G-P(sol) polarization free energy of solvation -58.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds