Wall clock time and date at job start Mon Mar 30 2020 02:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 113.99691 * 2 1 4 4 C 1.53003 * 109.47047 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47337 * 300.00200 * 3 2 1 6 6 H 1.07993 * 120.00431 * 125.23538 * 5 3 2 7 7 C 1.37878 * 119.99508 * 305.23858 * 5 3 2 8 8 N 1.31515 * 119.99750 * 197.94837 * 7 5 3 9 9 Si 1.86797 * 120.00418 * 17.95056 * 7 5 3 10 10 H 1.48494 * 109.47470 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47303 * 300.00192 * 9 7 5 12 12 H 1.48507 * 109.47019 * 59.99838 * 9 7 5 13 13 C 1.53003 * 109.47074 * 59.99831 * 3 2 1 14 14 H 1.08989 * 109.50385 * 304.92193 * 13 3 2 15 15 C 1.53119 * 109.50072 * 65.00394 * 13 3 2 16 16 C 1.53121 * 109.16185 * 177.59564 * 15 13 3 17 17 C 1.53041 * 109.27441 * 302.34406 * 16 15 13 18 18 N 1.46843 * 109.52402 * 59.17838 * 17 16 15 19 19 C 1.46851 * 111.19947 * 298.25385 * 18 17 16 20 20 H 1.09007 * 109.46962 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47169 * 299.99532 * 1 2 3 22 22 H 1.08997 * 109.47803 * 60.00053 * 1 2 3 23 23 H 1.09003 * 109.46856 * 187.26240 * 4 3 2 24 24 H 1.08998 * 109.47315 * 307.26306 * 4 3 2 25 25 H 1.09001 * 109.46632 * 67.26368 * 4 3 2 26 26 H 0.97000 * 120.00314 * 355.02854 * 8 7 5 27 27 H 1.09005 * 109.52170 * 297.49390 * 15 13 3 28 28 H 1.08999 * 109.52628 * 57.62573 * 15 13 3 29 29 H 1.09004 * 109.50381 * 62.28094 * 16 15 13 30 30 H 1.08998 * 109.50641 * 182.36232 * 16 15 13 31 31 H 1.08994 * 109.46148 * 179.19801 * 17 16 15 32 32 H 1.09001 * 109.46110 * 299.16869 * 17 16 15 33 33 H 1.00900 * 111.00083 * 62.35297 * 18 17 16 34 34 H 1.08992 * 109.46223 * 301.73460 * 19 18 17 35 35 H 1.09000 * 109.46379 * 181.75666 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 1.5654 2.0535 -1.2304 6 1 1.0907 3.0186 -1.1336 7 6 1.7645 1.5053 -2.4798 8 7 1.7137 2.2696 -3.5489 9 14 2.1063 -0.3228 -2.6541 10 1 2.2818 -0.6590 -4.0898 11 1 3.3438 -0.6683 -1.9095 12 1 0.9644 -1.0948 -2.1015 13 6 1.5586 2.0648 1.2492 14 1 0.4697 2.0754 1.2949 15 6 2.1160 1.3737 2.4968 16 6 1.7100 2.1732 3.7379 17 6 2.2293 3.6069 3.6076 18 7 1.6670 4.2246 2.3998 19 6 2.0824 3.5016 1.1910 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 3.9781 2.1724 0.1293 24 1 3.8488 0.5357 0.8170 25 1 3.8658 0.7603 -0.9487 26 1 1.4654 3.2036 -3.4660 27 1 1.7111 0.3640 2.5654 28 1 3.2030 1.3267 2.4322 29 1 0.6233 2.1862 3.8231 30 1 2.1391 1.7095 4.6261 31 1 1.9297 4.1827 4.4832 32 1 3.3169 3.5941 3.5362 33 1 0.6614 4.2834 2.4584 34 1 3.1706 3.4893 1.1312 35 1 1.6759 4.0009 0.3115 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254218.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:44 Heat of formation + Delta-G solvation = -73.994871 kcal Electronic energy + Delta-G solvation = -15818.208179 eV Core-core repulsion = 13428.967933 eV Total energy + Delta-G solvation = -2389.240246 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.78583 -38.26344 -34.86707 -33.55202 -32.35358 -30.06501 -27.37113 -26.70084 -24.51064 -24.36206 -21.87982 -20.24782 -19.40727 -17.27169 -16.81355 -16.47122 -16.08477 -15.58026 -15.30757 -14.91490 -14.70635 -14.59129 -13.96549 -13.48029 -13.25123 -12.96191 -12.70536 -12.48689 -12.21438 -12.02657 -12.00524 -11.85341 -11.78880 -11.42455 -11.24908 -10.70588 -10.46154 -9.95864 -9.21145 -8.66025 -6.41434 1.54915 1.59067 1.87549 2.51481 3.00441 3.39419 3.43892 3.84459 4.02881 4.16001 4.25939 4.44597 4.49904 4.57179 4.67956 4.72332 4.76385 4.82773 4.94325 5.00501 5.02700 5.06694 5.13473 5.18364 5.19986 5.38317 5.41354 5.72024 5.88164 6.05882 6.11154 6.48767 6.49919 6.82207 7.42045 8.65615 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.041505 B = 0.012023 C = 0.010809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.449839 B = 2328.381369 C = 2589.860072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.407 6.407 3 C 0.208 3.792 4 C -0.132 4.132 5 C -0.611 4.611 6 H 0.033 0.967 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 1.106 2.894 10 H -0.328 1.328 11 H -0.263 1.263 12 H -0.266 1.266 13 C -0.121 4.121 14 H 0.051 0.949 15 C -0.111 4.111 16 C -0.148 4.148 17 C 0.056 3.944 18 N -0.692 5.692 19 C 0.081 3.919 20 H 0.085 0.915 21 H 0.042 0.958 22 H 0.023 0.977 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.038 0.962 26 H 0.254 0.746 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.340 0.660 34 H 0.063 0.937 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.140 -2.195 14.352 14.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.328 6.328 3 C 0.169 3.831 4 C -0.189 4.189 5 C -0.648 4.648 6 H 0.051 0.949 7 C -0.203 4.203 8 N -0.571 5.571 9 Si 0.935 3.065 10 H -0.259 1.259 11 H -0.189 1.189 12 H -0.192 1.192 13 C -0.141 4.141 14 H 0.070 0.930 15 C -0.148 4.148 16 C -0.187 4.187 17 C -0.073 4.073 18 N -0.320 5.320 19 C -0.048 4.048 20 H 0.104 0.896 21 H 0.061 0.939 22 H 0.042 0.958 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.157 0.843 34 H 0.082 0.918 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.845 -3.004 13.250 13.613 hybrid contribution -1.348 0.998 0.422 1.730 sum -0.504 -2.006 13.672 13.828 Atomic orbital electron populations 1.22446 0.82041 1.01246 0.99546 1.87573 1.19923 1.31648 1.93644 1.19472 0.91040 0.80286 0.92259 1.22004 0.95237 1.01019 1.00649 1.22493 1.43923 1.05162 0.93215 0.94884 1.26878 0.92666 1.08420 0.92307 1.71014 1.45115 1.07815 1.33133 0.83209 0.79126 0.71975 0.72222 1.25851 1.18912 1.19190 1.22054 0.99274 0.97115 0.95666 0.93031 1.21606 1.00824 0.98779 0.93614 1.22216 1.01043 0.97406 0.98045 1.22096 0.99896 0.92735 0.92561 1.60768 1.15745 1.53006 1.02478 1.21820 0.99874 0.91217 0.91933 0.89639 0.93936 0.95835 0.91897 0.92304 0.94278 0.93649 0.92384 0.91875 0.92264 0.89835 0.89058 0.91376 0.84324 0.91834 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.70 8.88 113.37 1.01 2.71 16 2 O -0.41 -17.84 6.75 -148.98 -1.01 -18.84 16 3 C 0.21 9.22 0.17 -11.54 0.00 9.21 16 4 C -0.13 -5.57 7.69 71.98 0.55 -5.01 16 5 C -0.61 -32.83 6.58 25.60 0.17 -32.66 16 6 H 0.03 1.94 6.44 -2.91 -0.02 1.92 16 7 C 0.00 -0.14 5.22 84.65 0.44 0.30 16 8 N -0.93 -58.35 13.70 21.45 0.29 -58.05 16 9 Si 1.11 54.76 24.09 68.60 1.65 56.41 16 10 H -0.33 -16.86 7.11 99.48 0.71 -16.15 16 11 H -0.26 -12.22 5.78 99.48 0.58 -11.64 16 12 H -0.27 -12.22 6.05 99.48 0.60 -11.62 16 13 C -0.12 -4.47 1.47 -10.74 -0.02 -4.48 16 14 H 0.05 1.99 6.29 -2.39 -0.02 1.98 16 15 C -0.11 -3.36 4.75 30.67 0.15 -3.21 16 16 C -0.15 -3.50 6.08 30.65 0.19 -3.31 16 17 C 0.06 1.36 6.55 86.33 0.57 1.92 16 18 N -0.69 -20.66 6.87 -514.01 -3.53 -24.19 16 19 C 0.08 2.99 5.28 86.33 0.46 3.45 16 20 H 0.09 2.86 8.14 -2.38 -0.02 2.84 16 21 H 0.04 1.50 6.31 -2.38 -0.02 1.48 16 22 H 0.02 1.04 6.78 -2.39 -0.02 1.02 16 23 H 0.06 2.55 6.23 -2.39 -0.01 2.53 16 24 H 0.06 2.16 6.74 -2.39 -0.02 2.14 16 25 H 0.04 1.78 4.89 -2.39 -0.01 1.77 16 26 H 0.25 15.95 8.73 -92.71 -0.81 15.14 16 27 H 0.06 1.80 7.90 -2.38 -0.02 1.78 16 28 H 0.06 1.92 6.39 -2.39 -0.02 1.90 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.34 9.51 8.86 -89.69 -0.79 8.71 16 34 H 0.06 2.40 6.38 -2.39 -0.02 2.38 16 35 H 0.05 2.19 6.28 -2.39 -0.01 2.17 16 Total: -1.00 -61.95 251.92 0.93 -61.02 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.01 Total: 14.74 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 3.51 Total: -31.09 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -3.24 Total: -82.25 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -1.01 Total: -18.84 kcal Atomic # 14 Polarization: 54.76 SS G_CDS: 1.65 Total: 56.41 kcal Total: -61.95 0.93 -61.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254218.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.970 kcal (2) G-P(sol) polarization free energy of solvation -61.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds