Wall clock time and date at job start Mon Mar 30 2020 02:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99790 * 2 1 4 4 C 1.53002 * 109.46745 * 179.04770 * 3 2 1 5 5 C 1.50696 * 109.47360 * 59.04780 * 3 2 1 6 6 H 1.08003 * 119.99723 * 240.00393 * 5 3 2 7 7 C 1.37870 * 120.00171 * 59.99749 * 5 3 2 8 8 N 1.31519 * 120.00215 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99931 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.47151 * 90.00276 * 9 7 5 11 11 H 1.48501 * 109.47319 * 209.99752 * 9 7 5 12 12 H 1.48499 * 109.47325 * 330.00014 * 9 7 5 13 13 C 1.53003 * 109.46937 * 299.04183 * 3 2 1 14 14 H 1.08998 * 109.53343 * 60.05615 * 13 3 2 15 15 C 1.53123 * 109.49272 * 180.14996 * 13 3 2 16 16 C 1.53116 * 109.15223 * 177.60746 * 15 13 3 17 17 C 1.53031 * 109.27921 * 302.34260 * 16 15 13 18 18 N 1.46850 * 109.52628 * 59.17849 * 17 16 15 19 19 C 1.46845 * 111.19715 * 298.25934 * 18 17 16 20 20 H 1.08996 * 109.47179 * 185.19265 * 1 2 3 21 21 H 1.08999 * 109.46854 * 305.19683 * 1 2 3 22 22 H 1.08998 * 109.47363 * 65.19040 * 1 2 3 23 23 H 1.09001 * 109.46613 * 180.02562 * 4 3 2 24 24 H 1.09003 * 109.47177 * 299.99752 * 4 3 2 25 25 H 1.08994 * 109.47288 * 59.99897 * 4 3 2 26 26 H 0.96996 * 120.00074 * 180.02562 * 8 7 5 27 27 H 1.09003 * 109.53048 * 57.70429 * 15 13 3 28 28 H 1.08996 * 109.52609 * 297.51385 * 15 13 3 29 29 H 1.09003 * 109.50418 * 182.39799 * 16 15 13 30 30 H 1.09004 * 109.53415 * 62.30260 * 16 15 13 31 31 H 1.09001 * 109.46393 * 299.16223 * 17 16 15 32 32 H 1.09001 * 109.46301 * 179.19555 * 17 16 15 33 33 H 1.00902 * 110.99430 * 62.35435 * 18 17 16 34 34 H 1.09002 * 109.46237 * 181.75546 * 19 18 17 35 35 H 1.08997 * 109.45997 * 301.73489 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5352 1.1847 0.0240 5 6 1.5469 2.0617 1.2184 6 1 0.9988 2.9853 1.1047 7 6 1.8227 1.5743 2.4783 8 7 1.4179 2.2340 3.5417 9 14 2.7699 -0.0236 2.6750 10 1 4.2245 0.2680 2.7403 11 1 2.3442 -0.7007 3.9263 12 1 2.4940 -0.9086 1.5148 13 6 1.5778 2.0562 -1.2612 14 1 0.4915 2.1436 -1.2789 15 6 2.2033 3.4538 -1.2635 16 6 1.8145 4.1760 -2.5565 17 6 2.2787 3.3481 -3.7569 18 7 1.6525 2.0206 -3.7092 19 6 2.0491 1.2896 -2.4990 20 1 -0.3633 -1.0234 0.0930 21 1 -0.3633 0.5923 0.8398 22 1 -0.3634 0.4312 -0.9328 23 1 3.9785 2.1805 0.0244 24 1 3.8433 0.6499 0.9224 25 1 3.8703 0.6378 -0.8573 26 1 1.6122 1.8913 4.4281 27 1 3.2884 3.3676 -1.2067 28 1 1.8366 4.0186 -0.4064 29 1 2.2916 5.1557 -2.5838 30 1 0.7319 4.2973 -2.5949 31 1 3.3629 3.2395 -3.7258 32 1 1.9908 3.8525 -4.6792 33 1 0.6482 2.0921 -3.7757 34 1 1.5944 0.2990 -2.5076 35 1 3.1343 1.1909 -2.4737 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261254219.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:58 Heat of formation + Delta-G solvation = -44.765523 kcal Electronic energy + Delta-G solvation = -15796.069526 eV Core-core repulsion = 13408.096759 eV Total energy + Delta-G solvation = -2387.972766 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.19789 -36.61022 -32.88456 -31.78784 -30.88461 -28.63047 -25.67721 -24.99654 -23.36042 -22.66878 -20.54330 -18.54099 -16.77329 -15.79176 -15.10855 -14.82703 -14.42426 -14.31161 -13.75325 -13.36482 -12.95771 -12.62757 -12.22779 -12.13021 -11.83398 -11.33189 -11.32074 -10.88786 -10.72317 -10.64739 -10.46612 -10.11112 -9.97875 -9.78904 -9.54494 -8.78336 -8.60451 -8.19902 -7.66397 -6.12957 -4.21145 3.35751 3.48326 3.70836 4.50452 4.66257 4.97144 5.18155 5.32692 5.39633 5.47500 5.71324 5.81928 5.85383 6.01902 6.09589 6.25460 6.28739 6.31261 6.32731 6.42014 6.55354 6.60155 6.74694 6.78768 6.86257 6.88891 6.99149 7.35579 7.37837 7.64861 7.68258 8.20787 8.68291 8.88305 9.52467 10.97550 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.040834 B = 0.011813 C = 0.010971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.538822 B = 2369.780396 C = 2551.459912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.396 6.396 3 C 0.208 3.792 4 C -0.135 4.135 5 C -0.540 4.540 6 H 0.074 0.926 7 C 0.083 3.917 8 N -0.893 5.893 9 Si 0.874 3.126 10 H -0.289 1.289 11 H -0.306 1.306 12 H -0.219 1.219 13 C -0.125 4.125 14 H 0.062 0.938 15 C -0.106 4.106 16 C -0.158 4.158 17 C 0.058 3.942 18 N -0.690 5.690 19 C 0.059 3.941 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.019 0.981 23 H 0.064 0.936 24 H 0.045 0.955 25 H 0.039 0.961 26 H 0.264 0.736 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.334 0.666 34 H 0.074 0.926 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.798 -0.080 -10.627 10.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.316 6.316 3 C 0.169 3.831 4 C -0.192 4.192 5 C -0.578 4.578 6 H 0.092 0.908 7 C -0.121 4.121 8 N -0.530 5.530 9 Si 0.704 3.296 10 H -0.217 1.217 11 H -0.235 1.235 12 H -0.142 1.142 13 C -0.146 4.146 14 H 0.080 0.920 15 C -0.143 4.143 16 C -0.198 4.198 17 C -0.072 4.072 18 N -0.317 5.317 19 C -0.070 4.070 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.037 0.963 23 H 0.083 0.917 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.150 0.850 34 H 0.092 0.908 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.390 -0.545 -10.880 10.982 hybrid contribution -0.260 0.109 1.173 1.207 sum 1.129 -0.436 -9.707 9.782 Atomic orbital electron populations 1.22316 0.83704 0.99761 0.99715 1.87966 1.18181 1.30882 1.94580 1.19357 0.90172 0.80985 0.92552 1.22052 0.96495 1.00959 0.99698 1.21281 1.37697 1.09625 0.89152 0.90792 1.24990 0.94416 0.96981 0.95671 1.69944 1.45559 1.39311 0.98219 0.87174 0.78775 0.85642 0.78024 1.21673 1.23455 1.14194 1.22138 0.99943 0.95772 0.96716 0.91988 1.21572 1.00500 0.95779 0.96475 1.22312 1.00832 0.99396 0.97234 1.21981 0.99629 0.88916 0.96699 1.60800 1.13579 1.17632 1.39710 1.22150 1.01018 0.96980 0.86849 0.92661 0.92670 0.96261 0.91674 0.93636 0.94218 0.92662 0.92168 0.90693 0.92232 0.92621 0.91360 0.91715 0.84972 0.90788 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.85 10.26 101.05 1.04 1.89 16 2 O -0.40 -9.04 6.54 -35.23 -0.23 -9.27 16 3 C 0.21 4.67 0.16 -91.77 -0.01 4.65 16 4 C -0.14 -2.91 7.66 37.16 0.28 -2.62 16 5 C -0.54 -14.38 6.55 -34.44 -0.23 -14.61 16 6 H 0.07 2.14 6.97 -52.48 -0.37 1.78 16 7 C 0.08 2.35 5.45 -17.82 -0.10 2.25 16 8 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 9 Si 0.87 22.10 23.91 -169.99 -4.06 18.03 16 10 H -0.29 -7.21 6.87 56.52 0.39 -6.82 16 11 H -0.31 -7.89 7.11 56.52 0.40 -7.49 16 12 H -0.22 -5.39 5.30 56.52 0.30 -5.10 16 13 C -0.13 -2.38 1.30 -90.54 -0.12 -2.50 16 14 H 0.06 1.23 6.68 -51.93 -0.35 0.89 16 15 C -0.11 -1.90 4.69 -26.61 -0.12 -2.02 16 16 C -0.16 -2.31 6.08 -26.66 -0.16 -2.47 16 17 C 0.06 0.78 6.55 -3.84 -0.03 0.76 16 18 N -0.69 -10.20 6.87 -113.82 -0.78 -10.98 16 19 C 0.06 1.00 5.35 -3.84 -0.02 0.98 16 20 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 21 H 0.05 1.26 6.95 -51.93 -0.36 0.89 16 22 H 0.02 0.35 6.71 -51.93 -0.35 0.00 16 23 H 0.06 1.34 6.38 -51.93 -0.33 1.00 16 24 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 25 H 0.04 0.76 6.41 -51.93 -0.33 0.42 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.06 1.08 6.31 -51.93 -0.33 0.75 16 28 H 0.07 1.53 6.72 -51.93 -0.35 1.18 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.33 4.62 8.86 -39.29 -0.35 4.27 16 34 H 0.07 1.30 7.71 -51.93 -0.40 0.90 16 35 H 0.07 1.22 6.38 -51.93 -0.33 0.89 16 LS Contribution 252.98 15.07 3.81 3.81 Total: -1.00 -29.02 252.98 -5.33 -34.36 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.38 Total: 3.82 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 0.53 Total: -13.69 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.01 Total: -37.07 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.23 Total: -9.27 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.06 Total: 18.03 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.02 -5.33 -34.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254219.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.408 kcal (2) G-P(sol) polarization free energy of solvation -29.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds