Wall clock time and date at job start Mon Mar 30 2020 02:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99790 * 2 1 4 4 C 1.53002 * 109.46745 * 179.04770 * 3 2 1 5 5 C 1.50696 * 109.47360 * 59.04780 * 3 2 1 6 6 H 1.08003 * 119.99723 * 240.00393 * 5 3 2 7 7 C 1.37870 * 120.00171 * 59.99749 * 5 3 2 8 8 N 1.31519 * 120.00215 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99931 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.47151 * 90.00276 * 9 7 5 11 11 H 1.48501 * 109.47319 * 209.99752 * 9 7 5 12 12 H 1.48499 * 109.47325 * 330.00014 * 9 7 5 13 13 C 1.53003 * 109.46937 * 299.04183 * 3 2 1 14 14 H 1.08998 * 109.53343 * 60.05615 * 13 3 2 15 15 C 1.53123 * 109.49272 * 180.14996 * 13 3 2 16 16 C 1.53116 * 109.15223 * 177.60746 * 15 13 3 17 17 C 1.53031 * 109.27921 * 302.34260 * 16 15 13 18 18 N 1.46850 * 109.52628 * 59.17849 * 17 16 15 19 19 C 1.46845 * 111.19715 * 298.25934 * 18 17 16 20 20 H 1.08996 * 109.47179 * 185.19265 * 1 2 3 21 21 H 1.08999 * 109.46854 * 305.19683 * 1 2 3 22 22 H 1.08998 * 109.47363 * 65.19040 * 1 2 3 23 23 H 1.09001 * 109.46613 * 180.02562 * 4 3 2 24 24 H 1.09003 * 109.47177 * 299.99752 * 4 3 2 25 25 H 1.08994 * 109.47288 * 59.99897 * 4 3 2 26 26 H 0.96996 * 120.00074 * 180.02562 * 8 7 5 27 27 H 1.09003 * 109.53048 * 57.70429 * 15 13 3 28 28 H 1.08996 * 109.52609 * 297.51385 * 15 13 3 29 29 H 1.09003 * 109.50418 * 182.39799 * 16 15 13 30 30 H 1.09004 * 109.53415 * 62.30260 * 16 15 13 31 31 H 1.09001 * 109.46393 * 299.16223 * 17 16 15 32 32 H 1.09001 * 109.46301 * 179.19555 * 17 16 15 33 33 H 1.00902 * 110.99430 * 62.35435 * 18 17 16 34 34 H 1.09002 * 109.46237 * 181.75546 * 19 18 17 35 35 H 1.08997 * 109.45997 * 301.73489 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5352 1.1847 0.0240 5 6 1.5469 2.0617 1.2184 6 1 0.9988 2.9853 1.1047 7 6 1.8227 1.5743 2.4783 8 7 1.4179 2.2340 3.5417 9 14 2.7699 -0.0236 2.6750 10 1 4.2245 0.2680 2.7403 11 1 2.3442 -0.7007 3.9263 12 1 2.4940 -0.9086 1.5148 13 6 1.5778 2.0562 -1.2612 14 1 0.4915 2.1436 -1.2789 15 6 2.2033 3.4538 -1.2635 16 6 1.8145 4.1760 -2.5565 17 6 2.2787 3.3481 -3.7569 18 7 1.6525 2.0206 -3.7092 19 6 2.0491 1.2896 -2.4990 20 1 -0.3633 -1.0234 0.0930 21 1 -0.3633 0.5923 0.8398 22 1 -0.3634 0.4312 -0.9328 23 1 3.9785 2.1805 0.0244 24 1 3.8433 0.6499 0.9224 25 1 3.8703 0.6378 -0.8573 26 1 1.6122 1.8913 4.4281 27 1 3.2884 3.3676 -1.2067 28 1 1.8366 4.0186 -0.4064 29 1 2.2916 5.1557 -2.5838 30 1 0.7319 4.2973 -2.5949 31 1 3.3629 3.2395 -3.7258 32 1 1.9908 3.8525 -4.6792 33 1 0.6482 2.0921 -3.7757 34 1 1.5944 0.2990 -2.5076 35 1 3.1343 1.1909 -2.4737 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254219.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:51 Heat of formation + Delta-G solvation = -66.425026 kcal Electronic energy + Delta-G solvation = -15797.008752 eV Core-core repulsion = 13408.096759 eV Total energy + Delta-G solvation = -2388.911993 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.73589 -38.15235 -34.79845 -33.59237 -32.18974 -30.20215 -27.61438 -26.73969 -24.73994 -24.14909 -21.92078 -20.21672 -18.75097 -17.41562 -16.68197 -16.56299 -16.01445 -15.65266 -15.32755 -15.08221 -14.76369 -14.22461 -13.93375 -13.56166 -13.39387 -12.90051 -12.80049 -12.61917 -12.33224 -12.29799 -11.98233 -11.89724 -11.65504 -11.36883 -11.12243 -10.79651 -10.64157 -9.83944 -9.09906 -8.32558 -6.41551 1.33167 1.42489 1.68095 2.40232 3.00782 3.44281 3.47724 3.88665 4.06175 4.22052 4.27343 4.45045 4.51139 4.60842 4.70465 4.73256 4.78873 4.82004 4.95056 5.02326 5.07736 5.11943 5.13344 5.15526 5.26344 5.42141 5.48088 5.65653 5.69493 6.09922 6.14376 6.54142 6.66717 6.85089 7.35151 8.81832 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.040834 B = 0.011813 C = 0.010971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.538822 B = 2369.780396 C = 2551.459912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.404 6.404 3 C 0.205 3.795 4 C -0.136 4.136 5 C -0.526 4.526 6 H 0.036 0.964 7 C 0.031 3.969 8 N -0.942 5.942 9 Si 0.927 3.073 10 H -0.283 1.283 11 H -0.316 1.316 12 H -0.204 1.204 13 C -0.118 4.118 14 H 0.049 0.951 15 C -0.105 4.105 16 C -0.150 4.150 17 C 0.060 3.940 18 N -0.685 5.685 19 C 0.071 3.929 20 H 0.083 0.917 21 H 0.022 0.978 22 H 0.039 0.961 23 H 0.068 0.932 24 H 0.030 0.970 25 H 0.068 0.932 26 H 0.263 0.737 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.341 0.659 34 H 0.071 0.929 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.541 -0.948 -13.206 13.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.325 6.325 3 C 0.166 3.834 4 C -0.193 4.193 5 C -0.564 4.564 6 H 0.054 0.946 7 C -0.168 4.168 8 N -0.582 5.582 9 Si 0.756 3.244 10 H -0.210 1.210 11 H -0.245 1.245 12 H -0.126 1.126 13 C -0.139 4.139 14 H 0.068 0.932 15 C -0.142 4.142 16 C -0.190 4.190 17 C -0.069 4.069 18 N -0.313 5.313 19 C -0.058 4.058 20 H 0.101 0.899 21 H 0.041 0.959 22 H 0.058 0.942 23 H 0.087 0.913 24 H 0.049 0.951 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.158 0.842 34 H 0.089 0.911 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.130 -1.411 -13.492 13.732 hybrid contribution -0.572 0.461 1.937 2.071 sum 1.558 -0.950 -11.556 11.699 Atomic orbital electron populations 1.22414 0.82530 1.01142 0.99399 1.87906 1.19406 1.30535 1.94625 1.19376 0.90982 0.80852 0.92199 1.22043 0.95438 1.01543 1.00268 1.21533 1.35726 1.08239 0.90878 0.94571 1.25713 0.95636 0.99830 0.95596 1.70074 1.48137 1.41316 0.98719 0.86344 0.77795 0.82510 0.77768 1.21021 1.24537 1.12608 1.22036 0.99207 0.96276 0.96344 0.93250 1.21507 1.00309 0.95204 0.97222 1.22252 1.01010 0.99997 0.95691 1.22057 0.99749 0.88052 0.97072 1.60801 1.14299 1.18316 1.37877 1.21969 1.00905 0.96645 0.86297 0.89865 0.95941 0.94205 0.91274 0.95133 0.91300 0.92856 0.92000 0.94324 0.90636 0.92641 0.91039 0.89020 0.84158 0.91085 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.64 10.26 113.37 1.16 2.80 16 2 O -0.40 -17.71 6.54 -148.98 -0.97 -18.68 16 3 C 0.20 9.00 0.16 -11.54 0.00 8.99 16 4 C -0.14 -5.59 7.66 71.98 0.55 -5.04 16 5 C -0.53 -28.64 6.55 25.60 0.17 -28.47 16 6 H 0.04 2.20 6.97 -2.91 -0.02 2.18 16 7 C 0.03 1.78 5.45 84.65 0.46 2.24 16 8 N -0.94 -58.72 13.96 21.45 0.30 -58.42 16 9 Si 0.93 45.87 23.91 68.60 1.64 47.51 16 10 H -0.28 -13.58 6.87 99.48 0.68 -12.90 16 11 H -0.32 -16.01 7.11 99.48 0.71 -15.30 16 12 H -0.20 -9.51 5.30 99.48 0.53 -8.98 16 13 C -0.12 -4.34 1.30 -10.74 -0.01 -4.35 16 14 H 0.05 1.92 6.68 -2.39 -0.02 1.91 16 15 C -0.10 -3.67 4.69 30.67 0.14 -3.53 16 16 C -0.15 -4.00 6.08 30.64 0.19 -3.82 16 17 C 0.06 1.40 6.55 86.32 0.57 1.96 16 18 N -0.69 -17.78 6.87 -514.02 -3.53 -21.31 16 19 C 0.07 2.21 5.35 86.33 0.46 2.67 16 20 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 21 H 0.02 1.01 6.95 -2.39 -0.02 1.00 16 22 H 0.04 1.39 6.71 -2.39 -0.02 1.38 16 23 H 0.07 2.74 6.38 -2.39 -0.02 2.72 16 24 H 0.03 1.34 3.27 -2.39 -0.01 1.33 16 25 H 0.07 2.41 6.41 -2.39 -0.02 2.40 16 26 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 27 H 0.06 2.12 6.31 -2.39 -0.02 2.11 16 28 H 0.04 1.61 6.72 -2.39 -0.02 1.59 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.05 1.48 8.14 -2.38 -0.02 1.47 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.34 8.23 8.86 -89.69 -0.79 7.44 16 34 H 0.07 2.26 7.71 -2.39 -0.02 2.24 16 35 H 0.07 2.23 6.38 -2.39 -0.02 2.21 16 Total: -1.00 -63.15 252.98 1.20 -61.94 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.08 Total: 15.49 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: 3.69 Total: -26.53 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -3.23 Total: -79.73 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.97 Total: -18.68 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.64 Total: 47.51 kcal Total: -63.15 1.20 -61.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254219.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.481 kcal (2) G-P(sol) polarization free energy of solvation -63.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds