Wall clock time and date at job start Mon Mar 30 2020 02:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00021 * 2 1 4 4 C 1.53003 * 109.47280 * 187.32046 * 3 2 1 5 5 C 1.50700 * 109.47441 * 307.32342 * 3 2 1 6 6 H 1.08001 * 120.00476 * 119.99770 * 5 3 2 7 7 C 1.37879 * 120.00109 * 300.00199 * 5 3 2 8 8 N 1.31506 * 120.00204 * 179.97438 * 7 5 3 9 9 Si 1.86805 * 119.99811 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.46878 * 270.00184 * 9 7 5 11 11 H 1.48502 * 109.46939 * 29.99644 * 9 7 5 12 12 H 1.48493 * 109.47175 * 150.00296 * 9 7 5 13 13 C 1.52997 * 109.47084 * 67.32341 * 3 2 1 14 14 H 1.09005 * 109.50570 * 164.95035 * 13 3 2 15 15 C 1.53124 * 109.50557 * 44.83385 * 13 3 2 16 16 C 1.53110 * 109.16357 * 182.40685 * 15 13 3 17 17 C 1.53032 * 109.28249 * 57.65074 * 16 15 13 18 18 N 1.46845 * 109.52731 * 300.82391 * 17 16 15 19 19 C 1.46852 * 111.19635 * 61.73639 * 18 17 16 20 20 H 1.09004 * 109.47619 * 148.00100 * 1 2 3 21 21 H 1.08995 * 109.47782 * 268.00736 * 1 2 3 22 22 H 1.09006 * 109.47054 * 28.00352 * 1 2 3 23 23 H 1.08996 * 109.47162 * 179.97438 * 4 3 2 24 24 H 1.09000 * 109.46960 * 300.00967 * 4 3 2 25 25 H 1.09006 * 109.46441 * 60.00227 * 4 3 2 26 26 H 0.97006 * 119.99967 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.51887 * 302.31176 * 15 13 3 28 28 H 1.09005 * 109.51808 * 62.49866 * 15 13 3 29 29 H 1.09008 * 109.50417 * 297.71098 * 16 15 13 30 30 H 1.08996 * 109.54036 * 177.61823 * 16 15 13 31 31 H 1.09004 * 109.46725 * 180.80333 * 17 16 15 32 32 H 1.09002 * 109.46004 * 60.83611 * 17 16 15 33 33 H 1.00903 * 111.00438 * 185.83591 * 18 17 16 34 34 H 1.08998 * 109.46222 * 178.24659 * 19 18 17 35 35 H 1.08998 * 109.45946 * 58.27783 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5247 1.1894 -0.1838 5 6 1.4276 2.1148 -1.1298 6 1 0.8960 3.0311 -0.9197 7 6 1.5731 1.6854 -2.4320 8 7 1.0642 2.3914 -3.4179 9 14 2.4930 0.1008 -2.7957 10 1 3.9339 0.3996 -2.9952 11 1 2.3352 -0.8362 -1.6544 12 1 1.9413 -0.5206 -4.0263 13 6 1.7096 1.9975 1.3310 14 1 2.3600 2.8648 1.4453 15 6 1.9543 1.0188 2.4829 16 6 1.5938 1.6996 3.8060 17 6 0.1351 2.1596 3.7568 18 7 -0.0472 3.0944 2.6391 19 6 0.2475 2.4488 1.3534 20 1 -0.3634 -0.8715 -0.5446 21 1 -0.3634 -0.0357 1.0270 22 1 -0.3633 0.9074 -0.4825 23 1 3.9680 2.1852 -0.1843 24 1 3.9461 0.6039 0.6334 25 1 3.7388 0.6963 -1.1321 26 1 1.1669 2.0895 -4.3340 27 1 1.3323 0.1339 2.3473 28 1 3.0048 0.7282 2.4970 29 1 2.2424 2.5622 3.9600 30 1 1.7255 0.9944 4.6266 31 1 -0.1205 2.6576 4.6921 32 1 -0.5137 1.2951 3.6166 33 1 -0.9775 3.4853 2.6426 34 1 0.0735 3.1568 0.5432 35 1 -0.4019 1.5829 1.2246 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254220.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:00 Heat of formation + Delta-G solvation = -53.960849 kcal Electronic energy + Delta-G solvation = -15915.978098 eV Core-core repulsion = 13527.606592 eV Total energy + Delta-G solvation = -2388.371506 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.79416 -37.84259 -34.70050 -33.60528 -32.37280 -30.66269 -27.72505 -26.74492 -24.63901 -23.83515 -21.42106 -20.51376 -18.88318 -17.62245 -16.91721 -16.19081 -16.06625 -15.38221 -15.08460 -14.84152 -14.55747 -14.46846 -14.03103 -13.83509 -13.60197 -13.15687 -12.79011 -12.69607 -12.26914 -12.07069 -11.82964 -11.63385 -11.44610 -11.27277 -11.14301 -10.72686 -10.43333 -9.68836 -9.18389 -8.30689 -6.39862 1.34022 1.43651 1.68596 2.40987 3.00134 3.39793 3.47637 4.03958 4.10165 4.18856 4.31548 4.51102 4.60231 4.66121 4.73007 4.76005 4.85600 4.91339 4.96758 5.00629 5.08069 5.14213 5.15638 5.21361 5.27128 5.43117 5.54642 5.66983 5.72761 6.13774 6.20753 6.60843 6.70584 6.89266 7.36371 8.82479 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.043302 B = 0.012111 C = 0.011231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.466125 B = 2311.392493 C = 2492.446634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.401 6.401 3 C 0.199 3.801 4 C -0.134 4.134 5 C -0.532 4.532 6 H 0.051 0.949 7 C 0.037 3.963 8 N -0.937 5.937 9 Si 0.922 3.078 10 H -0.285 1.285 11 H -0.205 1.205 12 H -0.316 1.316 13 C -0.081 4.081 14 H 0.057 0.943 15 C -0.108 4.108 16 C -0.113 4.113 17 C 0.058 3.942 18 N -0.701 5.701 19 C 0.058 3.942 20 H 0.056 0.944 21 H 0.044 0.956 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.032 0.968 26 H 0.263 0.737 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.026 0.974 33 H 0.345 0.655 34 H 0.054 0.946 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.293 -3.858 13.011 13.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.321 6.321 3 C 0.160 3.840 4 C -0.191 4.191 5 C -0.569 4.569 6 H 0.069 0.931 7 C -0.163 4.163 8 N -0.577 5.577 9 Si 0.751 3.249 10 H -0.212 1.212 11 H -0.127 1.127 12 H -0.245 1.245 13 C -0.101 4.101 14 H 0.075 0.925 15 C -0.146 4.146 16 C -0.151 4.151 17 C -0.071 4.071 18 N -0.332 5.332 19 C -0.070 4.070 20 H 0.075 0.925 21 H 0.062 0.938 22 H 0.069 0.931 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.044 0.956 33 H 0.163 0.837 34 H 0.073 0.927 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.417 -3.738 12.937 13.473 hybrid contribution -0.665 -0.552 -1.224 1.498 sum -0.247 -4.290 11.713 12.476 Atomic orbital electron populations 1.22695 0.82905 1.01426 0.98979 1.87876 1.19213 1.30524 1.94533 1.19507 0.91014 0.81032 0.92404 1.21946 0.95587 1.01474 1.00058 1.21654 1.35491 1.08879 0.90922 0.93111 1.25666 0.95096 0.99328 0.96189 1.70057 1.46786 1.40767 1.00046 0.86435 0.77636 0.83159 0.77719 1.21206 1.12748 1.24510 1.21407 0.96174 0.97676 0.94812 0.92474 1.21539 1.01302 0.97744 0.94001 1.21596 0.96194 1.00261 0.97029 1.21975 0.96667 0.94227 0.94247 1.60278 1.33292 1.36592 1.03074 1.22313 0.96614 0.97718 0.90346 0.92526 0.93776 0.93144 0.91612 0.91603 0.94942 0.92783 0.92423 0.92006 0.91967 0.89854 0.89285 0.95623 0.83722 0.92734 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.44 8.80 113.37 1.00 2.44 16 2 O -0.40 -17.59 6.06 -148.98 -0.90 -18.49 16 3 C 0.20 8.85 0.37 -11.54 0.00 8.85 16 4 C -0.13 -5.60 8.20 71.98 0.59 -5.01 16 5 C -0.53 -28.55 6.17 25.60 0.16 -28.39 16 6 H 0.05 3.01 5.95 -2.91 -0.02 2.99 16 7 C 0.04 2.08 5.45 84.66 0.46 2.54 16 8 N -0.94 -57.38 13.96 21.45 0.30 -57.08 16 9 Si 0.92 45.36 23.90 68.60 1.64 47.00 16 10 H -0.28 -13.71 6.87 99.48 0.68 -13.02 16 11 H -0.21 -9.57 5.30 99.48 0.53 -9.04 16 12 H -0.32 -15.89 7.11 99.48 0.71 -15.18 16 13 C -0.08 -3.14 1.77 -10.74 -0.02 -3.16 16 14 H 0.06 2.33 8.05 -2.38 -0.02 2.31 16 15 C -0.11 -3.45 4.84 30.67 0.15 -3.30 16 16 C -0.11 -2.92 6.09 30.64 0.19 -2.73 16 17 C 0.06 1.46 6.55 86.32 0.57 2.03 16 18 N -0.70 -21.44 6.85 -514.00 -3.52 -24.96 16 19 C 0.06 2.20 4.62 86.32 0.40 2.60 16 20 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 21 H 0.04 1.54 6.02 -2.39 -0.01 1.52 16 22 H 0.05 2.27 5.25 -2.38 -0.01 2.26 16 23 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 24 H 0.07 2.36 7.05 -2.39 -0.02 2.35 16 25 H 0.03 1.43 3.27 -2.38 -0.01 1.43 16 26 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 27 H 0.06 1.90 6.35 -2.39 -0.02 1.89 16 28 H 0.06 1.89 7.09 -2.38 -0.02 1.88 16 29 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.03 0.64 8.14 -2.39 -0.02 0.63 16 33 H 0.34 9.22 8.90 -89.69 -0.80 8.42 16 34 H 0.05 2.42 5.90 -2.39 -0.01 2.40 16 35 H 0.04 1.62 4.04 -2.39 -0.01 1.61 16 Total: -1.00 -61.83 247.94 1.09 -60.75 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.09 Total: 16.92 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 3.48 Total: -24.14 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -3.22 Total: -82.04 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.90 Total: -18.49 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.64 Total: 47.00 kcal Total: -61.83 1.09 -60.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254220.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.784 kcal (2) G-P(sol) polarization free energy of solvation -61.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds