Wall clock time and date at job start Mon Mar 30 2020 02:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00173 * 2 1 4 4 C 1.50700 * 110.28649 * 64.92595 * 3 2 1 5 5 H 1.08003 * 119.99961 * 235.05060 * 4 3 2 6 6 C 1.37880 * 119.99903 * 55.32594 * 4 3 2 7 7 N 1.31507 * 119.99729 * 4.73512 * 6 4 3 8 8 Si 1.86803 * 119.99693 * 184.73312 * 6 4 3 9 9 H 1.48498 * 109.47264 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47114 * 120.00199 * 8 6 4 11 11 H 1.48500 * 109.46666 * 239.99758 * 8 6 4 12 12 C 1.54261 * 110.32626 * 187.05590 * 3 2 1 13 13 C 1.54374 * 105.05980 * 118.99474 * 12 3 2 14 14 N 1.48565 * 104.59710 * 23.85365 * 13 12 3 15 15 C 1.46899 * 110.99808 * 200.95614 * 14 13 12 16 16 C 1.53001 * 109.46537 * 184.89134 * 15 14 13 17 17 C 1.52999 * 109.47363 * 304.89157 * 15 14 13 18 18 C 1.48823 * 104.23155 * 320.49115 * 14 13 12 19 19 H 1.09005 * 109.46985 * 55.02788 * 1 2 3 20 20 H 1.09003 * 109.47107 * 175.02592 * 1 2 3 21 21 H 1.09001 * 109.47300 * 295.02774 * 1 2 3 22 22 H 0.97008 * 119.99489 * 179.97438 * 7 6 4 23 23 H 1.09002 * 110.32399 * 237.89666 * 12 3 2 24 24 H 1.08998 * 110.32257 * 359.97438 * 12 3 2 25 25 H 1.09006 * 110.40872 * 142.63484 * 13 12 3 26 26 H 1.08998 * 110.41325 * 265.07601 * 13 12 3 27 27 H 1.09005 * 109.47074 * 64.89802 * 15 14 13 28 28 H 1.09000 * 109.47187 * 60.00209 * 16 15 14 29 29 H 1.09006 * 109.46778 * 179.97438 * 16 15 14 30 30 H 1.09004 * 109.47327 * 300.00068 * 16 15 14 31 31 H 1.08999 * 109.46909 * 185.04107 * 17 15 14 32 32 H 1.08995 * 109.47030 * 305.03862 * 17 15 14 33 33 H 1.08999 * 109.46692 * 65.04143 * 17 15 14 34 34 H 1.08998 * 110.45014 * 280.76972 * 18 14 13 35 35 H 1.09005 * 110.49006 * 158.24776 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6755 2.0264 1.2803 5 1 1.1976 2.9944 1.2459 6 6 1.9846 1.4530 2.4955 7 7 2.6541 0.3219 2.5374 8 14 1.4524 2.2828 4.0822 9 1 0.7192 3.5345 3.7644 10 1 0.5650 1.3689 4.8453 11 1 2.6505 2.6050 4.8982 12 6 3.5397 1.2110 -0.1777 13 6 3.8391 1.9720 -1.4871 14 7 2.6958 2.9071 -1.6465 15 6 2.5602 3.3395 -3.0439 16 6 1.4540 4.3914 -3.1471 17 6 3.8829 3.9417 -3.5220 18 6 1.5119 2.1142 -1.2169 19 1 -0.3633 0.5891 -0.8421 20 1 -0.3633 -1.0238 -0.0891 21 1 -0.3634 0.4348 0.9312 22 1 2.8719 -0.0814 3.3924 23 1 4.0483 1.6861 0.6612 24 1 3.8471 0.1689 -0.2645 25 1 4.7739 2.5258 -1.3996 26 1 3.8837 1.2794 -2.3276 27 1 2.3052 2.4818 -3.6664 28 1 1.7089 5.2490 -2.5245 29 1 1.3537 4.7126 -4.1839 30 1 0.5116 3.9624 -2.8064 31 1 3.7568 4.3433 -4.5275 32 1 4.1831 4.7423 -2.8460 33 1 4.6511 3.1684 -3.5333 34 1 1.1931 1.4433 -2.0146 35 1 0.6953 2.7750 -0.9256 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261259409.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:47 Heat of formation + Delta-G solvation = -41.591005 kcal Electronic energy + Delta-G solvation = -15450.656525 eV Core-core repulsion = 13062.821416 eV Total energy + Delta-G solvation = -2387.835109 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.71939 -36.05725 -33.07907 -32.06483 -28.52061 -28.08097 -26.45287 -25.29001 -24.27601 -21.23713 -19.46731 -19.14479 -16.74393 -15.82125 -14.86479 -14.51145 -13.81888 -13.76585 -13.45891 -13.18665 -12.92075 -12.31023 -12.26130 -11.85531 -11.61534 -11.45088 -11.00896 -10.89044 -10.67202 -10.51609 -10.42179 -10.35565 -10.11968 -9.94270 -9.54181 -8.89448 -8.39420 -7.83554 -7.73232 -5.92925 -4.04978 3.31538 3.40161 3.44492 4.45956 4.56707 5.24413 5.27734 5.32247 5.50471 5.67228 5.80776 5.86597 5.96842 6.07757 6.11440 6.15249 6.23666 6.28180 6.42758 6.45795 6.54284 6.60049 6.63174 6.79346 6.93285 7.10039 7.24887 7.57922 7.79024 7.88461 7.92281 8.29689 8.86423 9.12444 9.65212 11.11436 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.034523 B = 0.010252 C = 0.009804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.867786 B = 2730.488297 C = 2855.375443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 O -0.376 6.376 3 C 0.238 3.762 4 C -0.536 4.536 5 H 0.059 0.941 6 C 0.079 3.921 7 N -0.858 5.858 8 Si 0.883 3.117 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 C -0.082 4.082 13 C 0.033 3.967 14 N -0.495 5.495 15 C 0.062 3.938 16 C -0.139 4.139 17 C -0.143 4.143 18 C 0.017 3.983 19 H 0.014 0.986 20 H 0.051 0.949 21 H 0.039 0.961 22 H 0.257 0.743 23 H 0.077 0.923 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.027 0.973 27 H 0.032 0.968 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.025 0.975 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.375 3.782 -8.670 9.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.294 6.294 3 C 0.200 3.800 4 C -0.574 4.574 5 H 0.077 0.923 6 C -0.127 4.127 7 N -0.494 5.494 8 Si 0.711 3.289 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.120 4.120 13 C -0.095 4.095 14 N -0.220 5.220 15 C -0.047 4.047 16 C -0.196 4.196 17 C -0.201 4.201 18 C -0.111 4.111 19 H 0.032 0.968 20 H 0.070 0.930 21 H 0.058 0.942 22 H 0.067 0.933 23 H 0.096 0.904 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.109 3.966 -8.249 9.153 hybrid contribution -0.625 -0.102 0.392 0.745 sum -0.734 3.864 -7.857 8.786 Atomic orbital electron populations 1.22195 0.84703 0.98670 0.98971 1.87902 1.16736 1.30261 1.94534 1.19678 0.89623 0.79917 0.90781 1.21388 1.41371 1.04515 0.90176 0.92310 1.24975 0.94286 0.94660 0.98749 1.70080 1.36864 1.17500 1.24967 0.86694 0.78523 0.79690 0.84013 1.19732 1.21095 1.21038 1.22069 0.97106 0.98351 0.94504 1.23165 0.94527 0.93639 0.98164 1.65449 1.03747 1.35291 1.17535 1.21798 0.95735 0.96899 0.90280 1.21764 0.98171 0.99199 1.00489 1.21846 0.96779 1.01206 1.00222 1.23857 0.93479 0.95650 0.98098 0.96791 0.93000 0.94212 0.93269 0.90401 0.92534 0.91410 0.95499 0.95002 0.91930 0.93136 0.92828 0.92941 0.91823 0.92878 0.95694 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.15 10.44 101.05 1.06 2.21 16 2 O -0.38 -9.79 9.58 -35.23 -0.34 -10.13 16 3 C 0.24 5.99 0.63 -90.39 -0.06 5.93 16 4 C -0.54 -14.64 6.91 -34.44 -0.24 -14.88 16 5 H 0.06 1.63 7.58 -52.48 -0.40 1.23 16 6 C 0.08 2.17 5.15 -17.82 -0.09 2.08 16 7 N -0.86 -24.61 12.09 55.43 0.67 -23.93 16 8 Si 0.88 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C -0.08 -1.97 5.68 -25.35 -0.14 -2.11 16 13 C 0.03 0.65 5.16 -2.18 -0.01 0.64 16 14 N -0.49 -9.88 5.20 -221.79 -1.15 -11.04 16 15 C 0.06 1.01 2.49 -67.71 -0.17 0.84 16 16 C -0.14 -2.01 9.24 37.16 0.34 -1.67 16 17 C -0.14 -1.96 8.78 37.16 0.33 -1.64 16 18 C 0.02 0.37 3.66 -2.04 -0.01 0.37 16 19 H 0.01 0.28 6.68 -51.93 -0.35 -0.07 16 20 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 21 H 0.04 0.93 7.50 -51.93 -0.39 0.54 16 22 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 23 H 0.08 2.03 7.50 -51.93 -0.39 1.64 16 24 H 0.06 1.40 7.98 -51.93 -0.41 0.98 16 25 H 0.07 1.24 7.77 -51.93 -0.40 0.84 16 26 H 0.03 0.51 8.00 -51.93 -0.42 0.09 16 27 H 0.03 0.53 7.90 -51.93 -0.41 0.12 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.81 7.24 -51.93 -0.38 0.43 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.72 7.13 -51.93 -0.37 0.35 16 34 H 0.02 0.53 7.29 -51.93 -0.38 0.15 16 35 H 0.07 1.58 7.32 -51.93 -0.38 1.20 16 LS Contribution 274.79 15.07 4.14 4.14 Total: -1.00 -29.13 274.79 -6.62 -35.74 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -5.92 Total: -2.83 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 1.01 Total: -8.23 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: -0.48 Total: -34.97 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.34 Total: -10.13 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.13 -6.62 -35.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259409.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.847 kcal (2) G-P(sol) polarization free energy of solvation -29.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds