Wall clock time and date at job start Mon Mar 30 2020 02:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00173 * 2 1 4 4 C 1.50700 * 110.28649 * 64.92595 * 3 2 1 5 5 H 1.08003 * 119.99961 * 235.05060 * 4 3 2 6 6 C 1.37880 * 119.99903 * 55.32594 * 4 3 2 7 7 N 1.31507 * 119.99729 * 4.73512 * 6 4 3 8 8 Si 1.86803 * 119.99693 * 184.73312 * 6 4 3 9 9 H 1.48498 * 109.47264 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47114 * 120.00199 * 8 6 4 11 11 H 1.48500 * 109.46666 * 239.99758 * 8 6 4 12 12 C 1.54261 * 110.32626 * 187.05590 * 3 2 1 13 13 C 1.54374 * 105.05980 * 118.99474 * 12 3 2 14 14 N 1.48565 * 104.59710 * 23.85365 * 13 12 3 15 15 C 1.46899 * 110.99808 * 200.95614 * 14 13 12 16 16 C 1.53001 * 109.46537 * 184.89134 * 15 14 13 17 17 C 1.52999 * 109.47363 * 304.89157 * 15 14 13 18 18 C 1.48823 * 104.23155 * 320.49115 * 14 13 12 19 19 H 1.09005 * 109.46985 * 55.02788 * 1 2 3 20 20 H 1.09003 * 109.47107 * 175.02592 * 1 2 3 21 21 H 1.09001 * 109.47300 * 295.02774 * 1 2 3 22 22 H 0.97008 * 119.99489 * 179.97438 * 7 6 4 23 23 H 1.09002 * 110.32399 * 237.89666 * 12 3 2 24 24 H 1.08998 * 110.32257 * 359.97438 * 12 3 2 25 25 H 1.09006 * 110.40872 * 142.63484 * 13 12 3 26 26 H 1.08998 * 110.41325 * 265.07601 * 13 12 3 27 27 H 1.09005 * 109.47074 * 64.89802 * 15 14 13 28 28 H 1.09000 * 109.47187 * 60.00209 * 16 15 14 29 29 H 1.09006 * 109.46778 * 179.97438 * 16 15 14 30 30 H 1.09004 * 109.47327 * 300.00068 * 16 15 14 31 31 H 1.08999 * 109.46909 * 185.04107 * 17 15 14 32 32 H 1.08995 * 109.47030 * 305.03862 * 17 15 14 33 33 H 1.08999 * 109.46692 * 65.04143 * 17 15 14 34 34 H 1.08998 * 110.45014 * 280.76972 * 18 14 13 35 35 H 1.09005 * 110.49006 * 158.24776 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6755 2.0264 1.2803 5 1 1.1976 2.9944 1.2459 6 6 1.9846 1.4530 2.4955 7 7 2.6541 0.3219 2.5374 8 14 1.4524 2.2828 4.0822 9 1 0.7192 3.5345 3.7644 10 1 0.5650 1.3689 4.8453 11 1 2.6505 2.6050 4.8982 12 6 3.5397 1.2110 -0.1777 13 6 3.8391 1.9720 -1.4871 14 7 2.6958 2.9071 -1.6465 15 6 2.5602 3.3395 -3.0439 16 6 1.4540 4.3914 -3.1471 17 6 3.8829 3.9417 -3.5220 18 6 1.5119 2.1142 -1.2169 19 1 -0.3633 0.5891 -0.8421 20 1 -0.3633 -1.0238 -0.0891 21 1 -0.3634 0.4348 0.9312 22 1 2.8719 -0.0814 3.3924 23 1 4.0483 1.6861 0.6612 24 1 3.8471 0.1689 -0.2645 25 1 4.7739 2.5258 -1.3996 26 1 3.8837 1.2794 -2.3276 27 1 2.3052 2.4818 -3.6664 28 1 1.7089 5.2490 -2.5245 29 1 1.3537 4.7126 -4.1839 30 1 0.5116 3.9624 -2.8064 31 1 3.7568 4.3433 -4.5275 32 1 4.1831 4.7423 -2.8460 33 1 4.6511 3.1684 -3.5333 34 1 1.1931 1.4433 -2.0146 35 1 0.6953 2.7750 -0.9256 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261259409.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:45 Heat of formation + Delta-G solvation = -61.490629 kcal Electronic energy + Delta-G solvation = -15451.519438 eV Core-core repulsion = 13062.821416 eV Total energy + Delta-G solvation = -2388.698021 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.40582 -37.76145 -34.80481 -33.95706 -30.11742 -29.81232 -27.81300 -27.11603 -26.15292 -22.81183 -21.05731 -20.87866 -18.76267 -17.38166 -16.63912 -16.38533 -15.62359 -15.24399 -15.13412 -14.96062 -14.43483 -14.02349 -13.82393 -13.12179 -13.04245 -12.88415 -12.83641 -12.63360 -12.56429 -12.24003 -12.04576 -11.89592 -11.66309 -11.63634 -11.41750 -10.86871 -10.46958 -9.78885 -9.28067 -8.03311 -6.21132 1.38821 1.41982 1.52306 2.43938 3.02473 3.24927 3.70622 4.00693 4.04716 4.15482 4.40271 4.47953 4.52653 4.54699 4.71297 4.78322 4.84903 4.88568 4.97371 4.98973 5.01892 5.04136 5.09924 5.21133 5.34194 5.38033 5.43627 5.74105 5.79180 6.06027 6.25061 6.35343 6.80791 7.14323 7.53510 9.00348 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.034523 B = 0.010252 C = 0.009804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.867786 B = 2730.488297 C = 2855.375443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 O -0.402 6.402 3 C 0.224 3.776 4 C -0.545 4.545 5 H 0.047 0.953 6 C 0.035 3.965 7 N -0.887 5.887 8 Si 0.942 3.058 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.281 1.281 12 C -0.080 4.080 13 C 0.045 3.955 14 N -0.508 5.508 15 C 0.056 3.944 16 C -0.135 4.135 17 C -0.138 4.138 18 C 0.032 3.968 19 H 0.034 0.966 20 H 0.076 0.924 21 H 0.019 0.981 22 H 0.257 0.743 23 H 0.047 0.953 24 H 0.039 0.961 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.034 0.966 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.031 0.969 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 4.752 -9.996 11.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.321 6.321 3 C 0.186 3.814 4 C -0.583 4.583 5 H 0.066 0.934 6 C -0.168 4.168 7 N -0.524 5.524 8 Si 0.768 3.232 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.207 1.207 12 C -0.118 4.118 13 C -0.083 4.083 14 N -0.233 5.233 15 C -0.052 4.052 16 C -0.192 4.192 17 C -0.195 4.195 18 C -0.096 4.096 19 H 0.052 0.948 20 H 0.094 0.906 21 H 0.038 0.962 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.103 0.897 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.328 4.949 -9.586 10.793 hybrid contribution -0.580 -0.406 0.772 1.047 sum -0.908 4.543 -8.814 9.957 Atomic orbital electron populations 1.22316 0.83048 1.00479 0.98740 1.87849 1.18710 1.30853 1.94694 1.19815 0.90244 0.79971 0.91391 1.21596 1.40903 1.04184 0.91628 0.93434 1.25625 0.94355 0.95240 1.01576 1.70193 1.37962 1.18771 1.25506 0.85775 0.78136 0.78808 0.80501 1.19378 1.20761 1.20710 1.21927 0.96501 0.97603 0.95774 1.23041 0.95300 0.93715 0.96198 1.65443 1.02686 1.34621 1.20600 1.21990 0.97867 0.97484 0.87881 1.21751 0.96890 0.98305 1.02302 1.21817 0.95185 1.00953 1.01556 1.23558 0.93967 0.95218 0.96852 0.94803 0.90575 0.96201 0.93380 0.93377 0.94217 0.89705 0.94068 0.94813 0.92504 0.90106 0.93942 0.90149 0.92339 0.92772 0.95127 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.24 10.44 113.37 1.18 3.42 16 2 O -0.40 -21.05 9.58 -148.98 -1.43 -22.48 16 3 C 0.22 11.33 0.63 -10.65 -0.01 11.33 16 4 C -0.55 -30.11 6.91 25.60 0.18 -29.93 16 5 H 0.05 2.67 7.58 -2.91 -0.02 2.64 16 6 C 0.03 1.93 5.15 84.66 0.44 2.36 16 7 N -0.89 -51.81 12.09 21.45 0.26 -51.55 16 8 Si 0.94 44.14 29.54 68.60 2.03 46.17 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 C -0.08 -3.87 5.68 31.49 0.18 -3.70 16 13 C 0.05 1.74 5.16 86.45 0.45 2.19 16 14 N -0.51 -19.53 5.20 -855.61 -4.45 -23.98 16 15 C 0.06 1.67 2.49 44.92 0.11 1.78 16 16 C -0.13 -3.55 9.24 71.98 0.67 -2.88 16 17 C -0.14 -3.32 8.78 71.98 0.63 -2.69 16 18 C 0.03 1.39 3.66 86.40 0.32 1.70 16 19 H 0.03 1.32 6.68 -2.38 -0.02 1.30 16 20 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 21 H 0.02 0.92 7.50 -2.39 -0.02 0.90 16 22 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 23 H 0.05 2.57 7.50 -2.39 -0.02 2.55 16 24 H 0.04 2.00 7.98 -2.39 -0.02 1.99 16 25 H 0.08 2.97 7.77 -2.38 -0.02 2.95 16 26 H 0.04 1.47 8.00 -2.39 -0.02 1.46 16 27 H 0.03 1.01 7.90 -2.38 -0.02 0.99 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.04 1.19 7.24 -2.39 -0.02 1.18 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 1.29 7.13 -2.39 -0.02 1.27 16 34 H 0.03 1.26 7.29 -2.39 -0.02 1.24 16 35 H 0.06 2.80 7.32 -2.38 -0.02 2.78 16 Total: -1.00 -62.20 274.79 1.58 -60.62 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 1.03 Total: 7.64 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 4.14 Total: -16.41 kcal Atomic # 7 Polarization: -71.34 SS G_CDS: -4.19 Total: -75.53 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -1.43 Total: -22.48 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -62.20 1.58 -60.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259409.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.873 kcal (2) G-P(sol) polarization free energy of solvation -62.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds