Wall clock time and date at job start Mon Mar 30 2020 02:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00132 * 2 1 4 4 C 1.50703 * 110.63714 * 306.33825 * 3 2 1 5 5 H 1.08000 * 120.00306 * 117.35530 * 4 3 2 6 6 C 1.37881 * 120.00086 * 297.34749 * 4 3 2 7 7 N 1.31515 * 119.99708 * 7.15457 * 6 4 3 8 8 Si 1.86801 * 119.99983 * 187.15654 * 6 4 3 9 9 H 1.48498 * 109.47065 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46972 * 120.00287 * 8 6 4 11 11 H 1.48505 * 109.46918 * 239.99959 * 8 6 4 12 12 C 1.54594 * 110.72478 * 183.18762 * 3 2 1 13 13 C 1.53994 * 105.13677 * 263.59134 * 12 3 2 14 14 N 1.47904 * 107.06019 * 1.22916 * 13 12 3 15 15 C 1.46900 * 110.99940 * 214.15344 * 14 13 12 16 16 C 1.52999 * 109.47046 * 296.07837 * 15 14 13 17 17 C 1.52996 * 109.47203 * 176.08007 * 15 14 13 18 18 C 1.48532 * 105.81596 * 334.66813 * 14 13 12 19 19 H 1.09000 * 109.47081 * 185.56203 * 1 2 3 20 20 H 1.08992 * 109.47300 * 305.56453 * 1 2 3 21 21 H 1.09007 * 109.46788 * 65.56671 * 1 2 3 22 22 H 0.97001 * 119.99730 * 179.97438 * 7 6 4 23 23 H 1.09006 * 110.30684 * 144.67808 * 12 3 2 24 24 H 1.08997 * 110.30931 * 22.51518 * 12 3 2 25 25 H 1.08997 * 109.91959 * 241.87366 * 13 12 3 26 26 H 1.09000 * 109.91385 * 120.58288 * 13 12 3 27 27 H 1.08997 * 109.46889 * 56.07539 * 15 14 13 28 28 H 1.08998 * 109.47118 * 296.86758 * 16 15 14 29 29 H 1.08998 * 109.47467 * 176.86889 * 16 15 14 30 30 H 1.09008 * 109.47245 * 56.86551 * 16 15 14 31 31 H 1.09002 * 109.47330 * 180.02562 * 17 15 14 32 32 H 1.09000 * 109.46857 * 299.99769 * 17 15 14 33 33 H 1.08998 * 109.47107 * 59.99349 * 17 15 14 34 34 H 1.09000 * 110.66418 * 157.64554 * 18 14 13 35 35 H 1.09001 * 110.66247 * 280.76817 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.4629 2.1306 -1.1361 5 1 0.9010 3.0294 -0.9289 6 6 1.6795 1.7382 -2.4400 7 7 2.2393 0.5752 -2.6923 8 14 1.1778 2.8585 -3.8481 9 1 0.5744 4.1005 -3.3017 10 1 2.3749 3.2042 -4.6561 11 1 0.1860 2.1615 -4.7059 12 6 3.5516 1.2180 -0.0804 13 6 4.0372 1.3275 1.3769 14 7 2.8329 1.4382 2.2283 15 6 3.0862 2.3026 3.3887 16 6 4.1573 1.6648 4.2757 17 6 1.7942 2.4715 4.1906 18 6 1.7736 2.0110 1.3589 19 1 -0.3633 -1.0228 0.0996 20 1 -0.3633 0.5977 0.8359 21 1 -0.3633 0.4251 -0.9357 22 1 2.3914 0.2990 -3.6096 23 1 3.9469 2.0426 -0.6738 24 1 3.8545 0.2629 -0.5095 25 1 4.6587 2.2150 1.4956 26 1 4.6028 0.4359 1.6477 27 1 3.4316 3.2781 3.0465 28 1 3.7897 0.7145 4.6629 29 1 4.3853 2.3319 5.1069 30 1 5.0600 1.4933 3.6892 31 1 1.9821 3.1133 5.0514 32 1 1.0312 2.9259 3.5587 33 1 1.4488 1.4959 4.5328 34 1 0.7844 1.7720 1.7494 35 1 1.8989 3.0892 1.2595 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261259412.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:52 Heat of formation + Delta-G solvation = -42.772304 kcal Electronic energy + Delta-G solvation = -15455.536524 eV Core-core repulsion = 13067.650190 eV Total energy + Delta-G solvation = -2387.886334 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.69510 -35.92543 -32.99299 -32.17117 -28.48660 -28.20115 -26.45886 -25.23795 -24.23101 -21.17051 -19.39936 -19.22474 -16.63471 -15.78324 -14.87091 -14.41319 -14.33592 -13.48615 -13.40993 -13.25834 -12.78208 -12.28666 -12.12724 -11.83293 -11.56216 -11.47953 -11.09298 -10.86044 -10.75853 -10.64288 -10.46077 -10.18067 -10.14674 -9.88841 -9.69809 -8.69452 -8.54514 -7.72859 -7.63961 -6.01780 -4.17621 3.24770 3.33997 3.37237 4.35799 4.66251 5.19115 5.29160 5.31637 5.57753 5.66452 5.81983 5.86190 5.99969 6.05088 6.12537 6.16771 6.25548 6.44186 6.46306 6.47557 6.61520 6.63171 6.74079 6.88453 7.07956 7.12656 7.40225 7.62698 7.69813 7.82124 7.88349 8.18975 8.83021 9.15285 9.54861 11.01112 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.041671 B = 0.009578 C = 0.009344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.770260 B = 2922.587726 C = 2995.981801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 O -0.367 6.367 3 C 0.245 3.755 4 C -0.556 4.556 5 H 0.057 0.943 6 C 0.082 3.918 7 N -0.852 5.852 8 Si 0.883 3.117 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 C -0.092 4.092 13 C 0.037 3.963 14 N -0.509 5.509 15 C 0.064 3.936 16 C -0.140 4.140 17 C -0.142 4.142 18 C 0.016 3.984 19 H 0.048 0.952 20 H 0.012 0.988 21 H 0.039 0.961 22 H 0.259 0.741 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.028 0.972 26 H 0.064 0.936 27 H 0.033 0.967 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.135 2.528 8.539 8.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.286 6.286 3 C 0.206 3.794 4 C -0.594 4.594 5 H 0.075 0.925 6 C -0.124 4.124 7 N -0.487 5.487 8 Si 0.711 3.289 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.209 1.209 12 C -0.131 4.131 13 C -0.091 4.091 14 N -0.234 5.234 15 C -0.045 4.045 16 C -0.197 4.197 17 C -0.199 4.199 18 C -0.112 4.112 19 H 0.067 0.933 20 H 0.031 0.969 21 H 0.058 0.942 22 H 0.069 0.931 23 H 0.082 0.918 24 H 0.092 0.908 25 H 0.046 0.954 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.179 1.723 8.629 8.877 hybrid contribution -0.200 1.698 -1.135 2.052 sum 0.979 3.420 7.493 8.295 Atomic orbital electron populations 1.22122 0.84562 0.98167 0.98888 1.87826 1.16912 1.29570 1.94268 1.19710 0.90042 0.81093 0.88524 1.21353 1.37276 1.09961 0.90800 0.92502 1.24984 0.94412 0.94450 0.98601 1.70125 1.40921 1.18178 1.19478 0.86693 0.78394 0.81228 0.82621 1.19738 1.20836 1.20933 1.22181 0.96493 1.02337 0.92067 1.22918 0.92265 0.98965 0.94928 1.64794 1.06782 1.45298 1.06500 1.21781 0.95548 0.94343 0.92790 1.21801 0.98336 1.00882 0.98721 1.21819 0.97248 1.01728 0.99129 1.23824 0.94586 0.96872 0.95868 0.93346 0.96922 0.94203 0.93065 0.91800 0.90846 0.95399 0.91808 0.94924 0.92116 0.93130 0.92806 0.93059 0.92685 0.92061 0.91480 0.94377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.38 10.40 101.05 1.05 2.43 16 2 O -0.37 -9.70 9.86 -35.23 -0.35 -10.04 16 3 C 0.25 6.15 0.51 -89.91 -0.05 6.11 16 4 C -0.56 -14.91 6.57 -34.44 -0.23 -15.13 16 5 H 0.06 1.52 7.80 -52.49 -0.41 1.11 16 6 C 0.08 2.22 5.21 -17.82 -0.09 2.12 16 7 N -0.85 -24.03 12.24 55.43 0.68 -23.35 16 8 Si 0.88 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C -0.09 -2.21 5.39 -25.38 -0.14 -2.34 16 13 C 0.04 0.75 5.46 -2.75 -0.02 0.73 16 14 N -0.51 -10.14 5.11 -222.51 -1.14 -11.28 16 15 C 0.06 1.05 2.37 -67.71 -0.16 0.89 16 16 C -0.14 -1.94 9.21 37.16 0.34 -1.60 16 17 C -0.14 -2.06 9.02 37.16 0.34 -1.72 16 18 C 0.02 0.35 4.35 -1.90 -0.01 0.34 16 19 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 20 H 0.01 0.27 6.43 -51.93 -0.33 -0.07 16 21 H 0.04 0.98 7.26 -51.93 -0.38 0.60 16 22 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 23 H 0.06 1.56 7.84 -51.93 -0.41 1.15 16 24 H 0.07 1.89 8.06 -51.93 -0.42 1.47 16 25 H 0.03 0.52 7.65 -51.93 -0.40 0.12 16 26 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 27 H 0.03 0.55 7.98 -51.93 -0.41 0.13 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.75 7.19 -51.92 -0.37 0.38 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.83 6.91 -51.93 -0.36 0.48 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.45 5.93 -51.93 -0.31 1.14 16 35 H 0.04 0.83 7.92 -51.93 -0.41 0.42 16 LS Contribution 274.66 15.07 4.14 4.14 Total: -1.00 -28.62 274.66 -6.52 -35.14 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -5.88 Total: -2.18 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 1.04 Total: -8.17 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: -0.46 Total: -34.63 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -0.35 Total: -10.04 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.62 -6.52 -35.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259412.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.630 kcal (2) G-P(sol) polarization free energy of solvation -28.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds