Wall clock time and date at job start Mon Mar 30 2020 02:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00132 * 2 1 4 4 C 1.50703 * 110.63714 * 306.33825 * 3 2 1 5 5 H 1.08000 * 120.00306 * 117.35530 * 4 3 2 6 6 C 1.37881 * 120.00086 * 297.34749 * 4 3 2 7 7 N 1.31515 * 119.99708 * 7.15457 * 6 4 3 8 8 Si 1.86801 * 119.99983 * 187.15654 * 6 4 3 9 9 H 1.48498 * 109.47065 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46972 * 120.00287 * 8 6 4 11 11 H 1.48505 * 109.46918 * 239.99959 * 8 6 4 12 12 C 1.54594 * 110.72478 * 183.18762 * 3 2 1 13 13 C 1.53994 * 105.13677 * 263.59134 * 12 3 2 14 14 N 1.47904 * 107.06019 * 1.22916 * 13 12 3 15 15 C 1.46900 * 110.99940 * 214.15344 * 14 13 12 16 16 C 1.52999 * 109.47046 * 296.07837 * 15 14 13 17 17 C 1.52996 * 109.47203 * 176.08007 * 15 14 13 18 18 C 1.48532 * 105.81596 * 334.66813 * 14 13 12 19 19 H 1.09000 * 109.47081 * 185.56203 * 1 2 3 20 20 H 1.08992 * 109.47300 * 305.56453 * 1 2 3 21 21 H 1.09007 * 109.46788 * 65.56671 * 1 2 3 22 22 H 0.97001 * 119.99730 * 179.97438 * 7 6 4 23 23 H 1.09006 * 110.30684 * 144.67808 * 12 3 2 24 24 H 1.08997 * 110.30931 * 22.51518 * 12 3 2 25 25 H 1.08997 * 109.91959 * 241.87366 * 13 12 3 26 26 H 1.09000 * 109.91385 * 120.58288 * 13 12 3 27 27 H 1.08997 * 109.46889 * 56.07539 * 15 14 13 28 28 H 1.08998 * 109.47118 * 296.86758 * 16 15 14 29 29 H 1.08998 * 109.47467 * 176.86889 * 16 15 14 30 30 H 1.09008 * 109.47245 * 56.86551 * 16 15 14 31 31 H 1.09002 * 109.47330 * 180.02562 * 17 15 14 32 32 H 1.09000 * 109.46857 * 299.99769 * 17 15 14 33 33 H 1.08998 * 109.47107 * 59.99349 * 17 15 14 34 34 H 1.09000 * 110.66418 * 157.64554 * 18 14 13 35 35 H 1.09001 * 110.66247 * 280.76817 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.4629 2.1306 -1.1361 5 1 0.9010 3.0294 -0.9289 6 6 1.6795 1.7382 -2.4400 7 7 2.2393 0.5752 -2.6923 8 14 1.1778 2.8585 -3.8481 9 1 0.5744 4.1005 -3.3017 10 1 2.3749 3.2042 -4.6561 11 1 0.1860 2.1615 -4.7059 12 6 3.5516 1.2180 -0.0804 13 6 4.0372 1.3275 1.3769 14 7 2.8329 1.4382 2.2283 15 6 3.0862 2.3026 3.3887 16 6 4.1573 1.6648 4.2757 17 6 1.7942 2.4715 4.1906 18 6 1.7736 2.0110 1.3589 19 1 -0.3633 -1.0228 0.0996 20 1 -0.3633 0.5977 0.8359 21 1 -0.3633 0.4251 -0.9357 22 1 2.3914 0.2990 -3.6096 23 1 3.9469 2.0426 -0.6738 24 1 3.8545 0.2629 -0.5095 25 1 4.6587 2.2150 1.4956 26 1 4.6028 0.4359 1.6477 27 1 3.4316 3.2781 3.0465 28 1 3.7897 0.7145 4.6629 29 1 4.3853 2.3319 5.1069 30 1 5.0600 1.4933 3.6892 31 1 1.9821 3.1133 5.0514 32 1 1.0312 2.9259 3.5587 33 1 1.4488 1.4959 4.5328 34 1 0.7844 1.7720 1.7494 35 1 1.8989 3.0892 1.2595 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261259412.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:51 Heat of formation + Delta-G solvation = -62.072091 kcal Electronic energy + Delta-G solvation = -15456.373426 eV Core-core repulsion = 13067.650190 eV Total energy + Delta-G solvation = -2388.723236 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.38140 -37.65055 -34.75662 -34.01665 -30.08078 -29.94185 -27.83054 -27.11963 -26.07250 -22.73968 -21.15447 -20.83228 -18.60714 -17.39573 -16.76440 -16.12384 -15.95547 -15.28539 -15.13873 -14.90391 -14.29966 -13.99159 -13.57154 -13.22932 -13.02321 -12.99279 -12.90483 -12.75505 -12.38671 -12.32086 -12.02052 -11.84275 -11.63960 -11.61766 -11.55492 -10.68554 -10.58671 -9.68746 -9.19990 -8.07935 -6.30092 1.37536 1.41143 1.50967 2.39717 3.11085 3.20181 3.67142 4.01372 4.08904 4.14417 4.39975 4.46824 4.49737 4.67592 4.73105 4.82732 4.85705 4.93704 4.99006 5.01525 5.03061 5.08864 5.17948 5.21563 5.35920 5.40669 5.50945 5.65350 5.83306 5.98609 6.19314 6.37736 6.76914 7.19717 7.47662 8.94457 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.041671 B = 0.009578 C = 0.009344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.770260 B = 2922.587726 C = 2995.981801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 O -0.392 6.392 3 C 0.230 3.770 4 C -0.567 4.567 5 H 0.051 0.949 6 C 0.039 3.961 7 N -0.882 5.882 8 Si 0.944 3.056 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.281 1.281 12 C -0.089 4.089 13 C 0.047 3.953 14 N -0.517 5.517 15 C 0.057 3.943 16 C -0.134 4.134 17 C -0.137 4.137 18 C 0.031 3.969 19 H 0.071 0.929 20 H 0.028 0.972 21 H 0.018 0.982 22 H 0.259 0.741 23 H 0.048 0.952 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.032 0.968 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.169 3.351 9.888 10.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 O -0.311 6.311 3 C 0.191 3.809 4 C -0.605 4.605 5 H 0.069 0.931 6 C -0.165 4.165 7 N -0.518 5.518 8 Si 0.769 3.231 9 H -0.192 1.192 10 H -0.204 1.204 11 H -0.207 1.207 12 C -0.128 4.128 13 C -0.081 4.081 14 N -0.242 5.242 15 C -0.051 4.051 16 C -0.191 4.191 17 C -0.195 4.195 18 C -0.097 4.097 19 H 0.089 0.911 20 H 0.047 0.953 21 H 0.036 0.964 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.211 2.556 9.992 10.384 hybrid contribution -0.226 1.434 -1.522 2.103 sum 0.985 3.990 8.469 9.414 Atomic orbital electron populations 1.22184 0.83211 0.99776 0.98347 1.87776 1.18537 1.30379 1.94449 1.19881 0.90400 0.80819 0.89771 1.21607 1.37096 1.09893 0.91888 0.93111 1.25651 0.94445 0.95555 1.00828 1.70240 1.42093 1.19647 1.19854 0.85746 0.78052 0.79553 0.79712 1.19233 1.20449 1.20736 1.22056 0.96265 1.00083 0.94378 1.22798 0.92615 1.00260 0.92401 1.64801 1.06030 1.46429 1.06903 1.21986 0.97410 0.93837 0.91862 1.21766 0.97145 1.01256 0.98975 1.21797 0.95908 1.02148 0.99637 1.23548 0.95429 0.96142 0.94610 0.91076 0.95344 0.96381 0.93134 0.93331 0.93593 0.93683 0.90799 0.95033 0.92278 0.90374 0.93082 0.90165 0.93834 0.92294 0.91411 0.94793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.83 10.40 113.37 1.18 4.01 16 2 O -0.39 -20.84 9.86 -148.98 -1.47 -22.31 16 3 C 0.23 11.61 0.51 -10.34 -0.01 11.60 16 4 C -0.57 -30.67 6.57 25.60 0.17 -30.50 16 5 H 0.05 2.74 7.80 -2.91 -0.02 2.71 16 6 C 0.04 2.12 5.21 84.66 0.44 2.56 16 7 N -0.88 -50.62 12.24 21.45 0.26 -50.36 16 8 Si 0.94 42.87 29.54 68.60 2.03 44.90 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 C -0.09 -4.32 5.39 31.47 0.17 -4.15 16 13 C 0.05 1.84 5.46 86.45 0.47 2.32 16 14 N -0.52 -19.80 5.11 -857.88 -4.38 -24.19 16 15 C 0.06 1.73 2.37 44.91 0.11 1.84 16 16 C -0.13 -3.29 9.21 71.98 0.66 -2.62 16 17 C -0.14 -3.61 9.02 71.98 0.65 -2.96 16 18 C 0.03 1.32 4.35 86.65 0.38 1.70 16 19 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 20 H 0.03 1.19 6.43 -2.39 -0.02 1.17 16 21 H 0.02 0.88 7.26 -2.38 -0.02 0.86 16 22 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 23 H 0.05 2.42 7.84 -2.38 -0.02 2.40 16 24 H 0.05 2.42 8.06 -2.39 -0.02 2.40 16 25 H 0.04 1.60 7.65 -2.39 -0.02 1.58 16 26 H 0.07 2.74 8.12 -2.39 -0.02 2.72 16 27 H 0.03 0.97 7.98 -2.39 -0.02 0.95 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.28 7.19 -2.38 -0.02 1.26 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.04 1.23 6.91 -2.39 -0.02 1.21 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 2.87 5.93 -2.39 -0.01 2.86 16 35 H 0.03 1.47 7.92 -2.39 -0.02 1.45 16 Total: -1.00 -60.70 274.66 1.69 -59.01 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 1.04 Total: 9.16 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 4.22 Total: -16.22 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -4.12 Total: -74.54 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -1.47 Total: -22.31 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -60.70 1.69 -59.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259412.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.065 kcal (2) G-P(sol) polarization free energy of solvation -60.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds