Wall clock time and date at job start Mon Mar 30 2020 04:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47570 * 2 1 4 4 O 1.42898 * 109.47316 * 239.99919 * 2 1 3 5 5 C 1.42895 * 114.00375 * 237.81756 * 4 2 1 6 6 C 1.50703 * 109.50315 * 59.95535 * 5 4 2 7 7 H 1.08007 * 119.99793 * 237.58907 * 6 5 4 8 8 C 1.37880 * 120.00048 * 57.59736 * 6 5 4 9 9 N 1.31513 * 119.99806 * 353.43367 * 8 6 5 10 10 Si 1.86801 * 119.99891 * 173.44057 * 8 6 5 11 11 H 1.48501 * 109.46924 * 59.99860 * 10 8 6 12 12 H 1.48506 * 109.46733 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47190 * 299.99466 * 10 8 6 14 14 C 1.53122 * 109.50309 * 299.88158 * 5 4 2 15 15 C 1.53206 * 109.11313 * 297.67369 * 14 5 4 16 16 C 1.53031 * 109.30061 * 302.36936 * 15 14 5 17 17 N 1.46850 * 109.52344 * 59.17763 * 16 15 14 18 18 C 1.46844 * 111.19940 * 298.25842 * 17 16 15 19 19 H 1.09002 * 109.46942 * 65.53677 * 1 2 3 20 20 H 1.08999 * 109.47261 * 305.54591 * 1 2 3 21 21 H 1.08998 * 109.47513 * 185.53833 * 1 2 3 22 22 H 1.09007 * 109.46952 * 120.00305 * 2 1 3 23 23 H 1.09003 * 109.46976 * 59.99941 * 3 2 1 24 24 H 1.09000 * 109.47698 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47332 * 300.00602 * 3 2 1 26 26 H 0.96999 * 120.00226 * 180.02562 * 9 8 6 27 27 H 1.08996 * 109.52249 * 57.61145 * 14 5 4 28 28 H 1.08995 * 109.52828 * 177.80824 * 14 5 4 29 29 H 1.08997 * 109.49067 * 182.41695 * 15 14 5 30 30 H 1.09004 * 109.52352 * 62.33933 * 15 14 5 31 31 H 1.08996 * 109.46127 * 299.16328 * 16 15 14 32 32 H 1.09002 * 109.46304 * 179.19369 * 16 15 14 33 33 H 1.00907 * 111.00092 * 174.16116 * 17 16 15 34 34 H 1.09005 * 109.46507 * 301.72961 * 18 17 16 35 35 H 1.09001 * 109.45625 * 181.75035 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.8556 -1.7886 -0.8882 6 6 2.1021 -2.8019 -0.0657 7 1 2.4840 -3.1072 0.8974 8 6 0.9254 -3.3394 -0.5427 9 7 0.3930 -2.8758 -1.6523 10 14 0.0874 -4.7259 0.3872 11 1 -0.2573 -4.2661 1.7565 12 1 -1.1521 -5.1231 -0.3278 13 1 1.0050 -5.8903 0.4723 14 6 4.0859 -1.3124 -0.1109 15 6 4.8776 -0.3285 -0.9785 16 6 5.2680 -1.0121 -2.2907 17 7 4.0563 -1.4488 -2.9961 18 6 3.3047 -2.4299 -2.2031 19 1 -0.3633 0.4256 -0.9354 20 1 -0.3634 0.5974 0.8361 21 1 -0.3634 -1.0228 0.0992 22 1 1.8933 -0.5139 0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 -0.4350 -3.2536 -1.9877 27 1 3.7680 -0.8165 0.8061 28 1 4.7148 -2.1679 0.1356 29 1 5.7777 -0.0185 -0.4477 30 1 4.2621 0.5453 -1.1924 31 1 5.8954 -1.8774 -2.0768 32 1 5.8191 -0.3098 -2.9162 33 1 4.2816 -1.8173 -3.9080 34 1 3.9413 -3.2886 -1.9895 35 1 2.4298 -2.7572 -2.7649 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261329867.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:19 Heat of formation + Delta-G solvation = -51.708885 kcal Electronic energy + Delta-G solvation = -15926.259448 eV Core-core repulsion = 13537.985595 eV Total energy + Delta-G solvation = -2388.273853 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.38767 -35.44051 -32.75354 -31.20114 -30.72290 -28.55890 -26.16133 -24.87389 -22.82557 -21.24660 -19.93823 -18.32171 -16.68241 -15.66506 -14.66763 -14.42496 -13.99852 -13.52884 -13.19579 -12.87310 -12.36440 -12.15752 -11.99585 -11.76807 -11.31877 -11.28267 -11.00244 -10.83692 -10.70098 -10.49566 -10.23045 -10.03753 -9.84967 -9.49954 -9.31273 -8.51417 -8.45977 -7.64074 -7.41714 -5.93049 -4.12566 3.28894 3.34865 3.37641 4.40269 5.05934 5.29606 5.46806 5.72500 5.78162 5.95294 6.07060 6.19458 6.23158 6.33987 6.50185 6.53160 6.55451 6.67619 6.73648 6.75033 6.79577 6.90524 7.01534 7.03293 7.30369 7.36244 7.53302 7.76359 7.93913 8.01956 8.28087 8.36808 8.85764 9.31198 9.61959 11.05090 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028003 B = 0.014879 C = 0.011607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.656261 B = 1881.362489 C = 2411.655430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.098 3.902 3 C -0.163 4.163 4 O -0.339 6.339 5 C 0.250 3.750 6 C -0.561 4.561 7 H 0.053 0.947 8 C 0.087 3.913 9 N -0.843 5.843 10 Si 0.876 3.124 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C -0.141 4.141 15 C -0.116 4.116 16 C 0.064 3.936 17 N -0.683 5.683 18 C 0.082 3.918 19 H 0.045 0.955 20 H 0.031 0.969 21 H 0.066 0.934 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.259 0.741 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.013 0.987 32 H 0.056 0.944 33 H 0.322 0.678 34 H 0.014 0.986 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.650 3.552 0.841 5.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.039 3.961 3 C -0.220 4.220 4 O -0.258 6.258 5 C 0.212 3.788 6 C -0.600 4.600 7 H 0.071 0.929 8 C -0.119 4.119 9 N -0.477 5.477 10 Si 0.703 3.297 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.203 1.203 14 C -0.179 4.179 15 C -0.154 4.154 16 C -0.065 4.065 17 N -0.313 5.313 18 C -0.046 4.046 19 H 0.064 0.936 20 H 0.050 0.950 21 H 0.085 0.915 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.032 0.968 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.067 4.126 0.724 5.838 hybrid contribution 0.147 -1.733 0.767 1.901 sum 4.214 2.393 1.491 5.070 Atomic orbital electron populations 1.21897 0.96969 1.02061 0.99039 1.21393 0.93037 0.90134 0.91547 1.22280 1.00780 0.98664 1.00289 1.88004 1.65961 1.44214 1.27612 1.18895 0.85137 0.84584 0.90233 1.21445 1.08147 1.25674 1.04707 0.92912 1.24942 0.96599 0.95618 0.94784 1.70094 1.18403 1.38921 1.20317 0.86945 0.79021 0.83367 0.80344 1.20266 1.21218 1.20308 1.22298 0.99235 0.97757 0.98639 1.21615 0.98712 0.99910 0.95123 1.21799 0.91531 0.97440 0.95776 1.60368 1.21430 1.44496 1.05020 1.21965 0.96465 0.90392 0.95764 0.93588 0.95040 0.91475 0.92657 0.93747 0.93102 0.93100 0.93097 0.92963 0.93376 0.93859 0.90732 0.96880 0.92583 0.86177 0.96812 0.88316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.56 37.16 0.36 -2.74 16 2 C 0.10 2.18 2.24 -26.74 -0.06 2.12 16 3 C -0.16 -3.04 9.38 37.15 0.35 -2.69 16 4 O -0.34 -8.50 8.06 -35.23 -0.28 -8.78 16 5 C 0.25 6.09 0.29 -91.69 -0.03 6.07 16 6 C -0.56 -14.79 6.82 -34.44 -0.23 -15.03 16 7 H 0.05 1.40 7.75 -52.48 -0.41 1.00 16 8 C 0.09 2.30 4.50 -17.82 -0.08 2.22 16 9 N -0.84 -22.91 10.81 55.43 0.60 -22.31 16 10 Si 0.88 20.55 29.54 -169.99 -5.02 15.52 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 C -0.14 -3.03 4.52 -26.56 -0.12 -3.15 16 15 C -0.12 -2.18 5.75 -26.61 -0.15 -2.33 16 16 C 0.06 1.17 6.55 -3.84 -0.03 1.14 16 17 N -0.68 -14.03 6.73 -113.82 -0.77 -14.80 16 18 C 0.08 1.95 5.32 -3.84 -0.02 1.93 16 19 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 20 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.07 1.62 7.09 -51.93 -0.37 1.26 16 22 H 0.06 1.29 5.71 -51.92 -0.30 0.99 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.92 6.14 -51.93 -0.32 0.60 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 27 H 0.05 1.11 6.52 -51.93 -0.34 0.77 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.49 5.81 -51.93 -0.30 1.18 16 31 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.32 5.81 8.90 -39.29 -0.35 5.46 16 34 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.10 2.60 6.56 -51.93 -0.34 2.26 16 LS Contribution 267.45 15.07 4.03 4.03 Total: -1.00 -27.56 267.45 -7.12 -34.67 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.66 Total: 4.12 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -0.02 Total: -12.45 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: -0.17 Total: -37.11 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.28 Total: -8.78 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.56 -7.12 -34.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261329867.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.035 kcal (2) G-P(sol) polarization free energy of solvation -27.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds