Wall clock time and date at job start Mon Mar 30 2020 04:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46856 * 2 1 4 4 O 1.42897 * 109.47450 * 119.99725 * 2 1 3 5 5 C 1.42910 * 113.99841 * 107.90212 * 4 2 1 6 6 C 1.50698 * 109.50213 * 54.60631 * 5 4 2 7 7 H 1.08003 * 120.00026 * 238.78231 * 6 5 4 8 8 C 1.37876 * 120.00296 * 58.77916 * 6 5 4 9 9 N 1.31516 * 120.00368 * 187.38389 * 8 6 5 10 10 Si 1.86805 * 119.99659 * 7.11023 * 8 6 5 11 11 H 1.48502 * 109.46937 * 86.08160 * 10 8 6 12 12 H 1.48503 * 109.46689 * 206.08130 * 10 8 6 13 13 H 1.48495 * 109.47260 * 326.08188 * 10 8 6 14 14 C 1.53115 * 109.53347 * 174.70359 * 5 4 2 15 15 C 1.53118 * 109.16301 * 62.30616 * 14 5 4 16 16 C 1.53040 * 109.27582 * 57.65344 * 15 14 5 17 17 N 1.46849 * 109.52250 * 300.81776 * 16 15 14 18 18 C 1.46849 * 111.19680 * 61.74669 * 17 16 15 19 19 H 1.09004 * 109.46636 * 181.99924 * 1 2 3 20 20 H 1.08994 * 109.47083 * 301.99569 * 1 2 3 21 21 H 1.09001 * 109.47467 * 62.00120 * 1 2 3 22 22 H 1.09004 * 109.47140 * 240.00133 * 2 1 3 23 23 H 1.09000 * 109.46813 * 184.89114 * 3 2 1 24 24 H 1.09002 * 109.46787 * 304.88510 * 3 2 1 25 25 H 1.08997 * 109.47211 * 64.88947 * 3 2 1 26 26 H 0.96991 * 120.00476 * 179.72633 * 9 8 6 27 27 H 1.09000 * 109.52381 * 182.21427 * 14 5 4 28 28 H 1.09002 * 109.52421 * 302.40241 * 14 5 4 29 29 H 1.09003 * 109.50353 * 297.71536 * 15 14 5 30 30 H 1.09000 * 109.50661 * 177.59330 * 15 14 5 31 31 H 1.09003 * 109.45862 * 180.80694 * 16 15 14 32 32 H 1.08994 * 109.45270 * 60.83576 * 16 15 14 33 33 H 1.00900 * 111.00340 * 297.64665 * 17 16 15 34 34 H 1.08998 * 109.46462 * 178.23865 * 18 17 16 35 35 H 1.09000 * 109.46271 * 58.26847 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.5785 -1.9566 0.9043 6 6 3.6652 -1.8206 -0.1308 7 1 3.5993 -2.3701 -1.0583 8 6 4.7436 -0.9947 0.1060 9 7 5.6162 -0.7621 -0.8501 10 14 4.9609 -0.2002 1.7826 11 1 5.6878 -1.1322 2.6815 12 1 5.7395 1.0561 1.6377 13 1 3.6284 0.1073 2.3612 14 6 3.1712 -2.5267 2.1959 15 6 2.0506 -2.7178 3.2217 16 6 0.9813 -3.6423 2.6354 17 7 0.4450 -3.0524 1.4022 18 6 1.4938 -2.9031 0.3852 19 1 -0.3633 -1.0271 0.0359 20 1 -0.3633 0.5445 0.8715 21 1 -0.3634 0.4824 -0.9074 22 1 1.8933 -0.5138 -0.8900 23 1 3.1264 1.4438 -0.0876 24 1 1.6068 1.9810 -0.8430 25 1 1.7499 1.9305 0.9305 26 1 6.3726 -0.1779 -0.6848 27 1 3.6421 -3.4874 1.9876 28 1 3.9139 -1.8344 2.5925 29 1 1.6058 -1.7513 3.4589 30 1 2.4594 -3.1633 4.1286 31 1 0.1750 -3.7690 3.3579 32 1 1.4238 -4.6128 2.4112 33 1 -0.0050 -2.1690 1.5898 34 1 1.0598 -2.4930 -0.5266 35 1 1.9338 -3.8772 0.1716 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261329868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:22 Heat of formation + Delta-G solvation = -47.338638 kcal Electronic energy + Delta-G solvation = -16071.872882 eV Core-core repulsion = 13683.788537 eV Total energy + Delta-G solvation = -2388.084345 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.06196 -35.83112 -32.95441 -31.70385 -30.70740 -29.26372 -26.54569 -24.92691 -23.21821 -21.31069 -20.31854 -19.12187 -16.85696 -15.72315 -15.29571 -14.95315 -14.24183 -13.66375 -13.39358 -13.14446 -12.87722 -12.59128 -12.15182 -11.92808 -11.67900 -11.46618 -11.27902 -11.13357 -10.73495 -10.59865 -10.55036 -10.18751 -10.11520 -9.72569 -9.47002 -8.86140 -8.73135 -8.33005 -7.38476 -6.18744 -4.26466 3.30894 3.43270 3.62048 4.44070 4.79756 4.99773 5.21486 5.48276 5.64582 5.74788 5.78865 5.88201 6.05360 6.07998 6.13395 6.19758 6.22799 6.34656 6.39620 6.45824 6.51449 6.56581 6.70604 6.79554 6.95175 7.00857 7.05333 7.29336 7.44516 7.69705 8.00079 8.18520 8.69910 8.84856 9.47134 10.91747 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.017780 C = 0.013753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.655988 B = 1574.456584 C = 2035.377678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.087 3.913 3 C -0.148 4.148 4 O -0.386 6.386 5 C 0.174 3.826 6 C -0.546 4.546 7 H 0.075 0.925 8 C 0.092 3.908 9 N -0.887 5.887 10 Si 0.874 3.126 11 H -0.290 1.290 12 H -0.306 1.306 13 H -0.226 1.226 14 C -0.104 4.104 15 C -0.157 4.157 16 C 0.061 3.939 17 N -0.690 5.690 18 C 0.048 3.952 19 H 0.058 0.942 20 H 0.048 0.952 21 H 0.052 0.948 22 H 0.082 0.918 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.265 0.735 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.338 0.662 34 H 0.069 0.931 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.103 -0.396 4.774 9.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.029 3.971 3 C -0.206 4.206 4 O -0.306 6.306 5 C 0.134 3.866 6 C -0.584 4.584 7 H 0.093 0.907 8 C -0.113 4.113 9 N -0.523 5.523 10 Si 0.705 3.295 11 H -0.218 1.218 12 H -0.234 1.234 13 H -0.149 1.149 14 C -0.141 4.141 15 C -0.197 4.197 16 C -0.069 4.069 17 N -0.319 5.319 18 C -0.081 4.081 19 H 0.077 0.923 20 H 0.068 0.932 21 H 0.071 0.929 22 H 0.100 0.900 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.157 0.843 34 H 0.087 0.913 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.220 -0.852 4.642 9.478 hybrid contribution 1.064 1.141 0.947 1.826 sum -7.155 0.290 5.589 9.084 Atomic orbital electron populations 1.22372 0.97785 1.01689 1.00781 1.21639 0.90891 0.92696 0.91852 1.21923 1.01960 0.96522 1.00180 1.87919 1.78599 1.32574 1.31517 1.20057 0.91789 0.81706 0.93027 1.21229 1.04823 1.28785 1.03540 0.90695 1.24923 0.94913 0.94797 0.96679 1.69944 1.13637 1.36256 1.32501 0.87158 0.79635 0.77668 0.85066 1.21838 1.23401 1.14881 1.21820 0.96674 1.00593 0.95060 1.22281 0.98417 1.00405 0.98564 1.21913 0.95831 0.97614 0.91505 1.60900 1.30151 1.30995 1.09842 1.22473 0.91596 0.99833 0.94216 0.92325 0.93244 0.92922 0.90017 0.92264 0.92987 0.93531 0.92555 0.91338 0.92924 0.91805 0.93041 0.91994 0.91631 0.84348 0.91265 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 9.08 37.16 0.34 -2.42 16 2 C 0.09 1.76 2.31 -26.73 -0.06 1.70 16 3 C -0.15 -2.88 9.56 37.16 0.36 -2.52 16 4 O -0.39 -8.50 5.81 -35.23 -0.20 -8.70 16 5 C 0.17 3.89 0.26 -91.69 -0.02 3.87 16 6 C -0.55 -14.52 6.96 -34.44 -0.24 -14.76 16 7 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 8 C 0.09 2.56 5.46 -17.82 -0.10 2.46 16 9 N -0.89 -26.30 13.96 55.43 0.77 -25.52 16 10 Si 0.87 22.07 22.79 -169.99 -3.87 18.19 16 11 H -0.29 -7.30 6.95 56.52 0.39 -6.91 16 12 H -0.31 -7.86 7.11 56.52 0.40 -7.45 16 13 H -0.23 -5.55 5.46 56.52 0.31 -5.24 16 14 C -0.10 -2.24 4.39 -26.61 -0.12 -2.36 16 15 C -0.16 -2.81 5.92 -26.65 -0.16 -2.97 16 16 C 0.06 1.00 6.55 -3.83 -0.03 0.97 16 17 N -0.69 -12.10 6.77 -113.81 -0.77 -12.87 16 18 C 0.05 0.96 4.63 -3.83 -0.02 0.94 16 19 H 0.06 0.94 5.36 -51.93 -0.28 0.66 16 20 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.08 1.84 6.02 -51.93 -0.31 1.53 16 23 H 0.06 1.30 7.13 -51.93 -0.37 0.93 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.05 1.23 3.05 -51.93 -0.16 1.07 16 29 H 0.06 1.19 7.80 -51.93 -0.41 0.78 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.34 5.86 6.66 -39.29 -0.26 5.60 16 34 H 0.07 1.39 6.34 -51.93 -0.33 1.06 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 255.93 15.07 3.86 3.86 Total: -1.00 -28.35 255.93 -5.84 -34.19 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.58 Total: 5.95 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -0.05 Total: -15.09 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.00 Total: -38.39 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.20 Total: -8.70 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -3.87 Total: 18.19 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.35 -5.84 -34.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261329868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.145 kcal (2) G-P(sol) polarization free energy of solvation -28.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds