Wall clock time and date at job start Mon Mar 30 2020 04:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46856 * 2 1 4 4 O 1.42897 * 109.47450 * 119.99725 * 2 1 3 5 5 C 1.42910 * 113.99841 * 107.90212 * 4 2 1 6 6 C 1.50698 * 109.50213 * 54.60631 * 5 4 2 7 7 H 1.08003 * 120.00026 * 238.78231 * 6 5 4 8 8 C 1.37876 * 120.00296 * 58.77916 * 6 5 4 9 9 N 1.31516 * 120.00368 * 187.38389 * 8 6 5 10 10 Si 1.86805 * 119.99659 * 7.11023 * 8 6 5 11 11 H 1.48502 * 109.46937 * 86.08160 * 10 8 6 12 12 H 1.48503 * 109.46689 * 206.08130 * 10 8 6 13 13 H 1.48495 * 109.47260 * 326.08188 * 10 8 6 14 14 C 1.53115 * 109.53347 * 174.70359 * 5 4 2 15 15 C 1.53118 * 109.16301 * 62.30616 * 14 5 4 16 16 C 1.53040 * 109.27582 * 57.65344 * 15 14 5 17 17 N 1.46849 * 109.52250 * 300.81776 * 16 15 14 18 18 C 1.46849 * 111.19680 * 61.74669 * 17 16 15 19 19 H 1.09004 * 109.46636 * 181.99924 * 1 2 3 20 20 H 1.08994 * 109.47083 * 301.99569 * 1 2 3 21 21 H 1.09001 * 109.47467 * 62.00120 * 1 2 3 22 22 H 1.09004 * 109.47140 * 240.00133 * 2 1 3 23 23 H 1.09000 * 109.46813 * 184.89114 * 3 2 1 24 24 H 1.09002 * 109.46787 * 304.88510 * 3 2 1 25 25 H 1.08997 * 109.47211 * 64.88947 * 3 2 1 26 26 H 0.96991 * 120.00476 * 179.72633 * 9 8 6 27 27 H 1.09000 * 109.52381 * 182.21427 * 14 5 4 28 28 H 1.09002 * 109.52421 * 302.40241 * 14 5 4 29 29 H 1.09003 * 109.50353 * 297.71536 * 15 14 5 30 30 H 1.09000 * 109.50661 * 177.59330 * 15 14 5 31 31 H 1.09003 * 109.45862 * 180.80694 * 16 15 14 32 32 H 1.08994 * 109.45270 * 60.83576 * 16 15 14 33 33 H 1.00900 * 111.00340 * 297.64665 * 17 16 15 34 34 H 1.08998 * 109.46462 * 178.23865 * 18 17 16 35 35 H 1.09000 * 109.46271 * 58.26847 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.5785 -1.9566 0.9043 6 6 3.6652 -1.8206 -0.1308 7 1 3.5993 -2.3701 -1.0583 8 6 4.7436 -0.9947 0.1060 9 7 5.6162 -0.7621 -0.8501 10 14 4.9609 -0.2002 1.7826 11 1 5.6878 -1.1322 2.6815 12 1 5.7395 1.0561 1.6377 13 1 3.6284 0.1073 2.3612 14 6 3.1712 -2.5267 2.1959 15 6 2.0506 -2.7178 3.2217 16 6 0.9813 -3.6423 2.6354 17 7 0.4450 -3.0524 1.4022 18 6 1.4938 -2.9031 0.3852 19 1 -0.3633 -1.0271 0.0359 20 1 -0.3633 0.5445 0.8715 21 1 -0.3634 0.4824 -0.9074 22 1 1.8933 -0.5138 -0.8900 23 1 3.1264 1.4438 -0.0876 24 1 1.6068 1.9810 -0.8430 25 1 1.7499 1.9305 0.9305 26 1 6.3726 -0.1779 -0.6848 27 1 3.6421 -3.4874 1.9876 28 1 3.9139 -1.8344 2.5925 29 1 1.6058 -1.7513 3.4589 30 1 2.4594 -3.1633 4.1286 31 1 0.1750 -3.7690 3.3579 32 1 1.4238 -4.6128 2.4112 33 1 -0.0050 -2.1690 1.5898 34 1 1.0598 -2.4930 -0.5266 35 1 1.9338 -3.8772 0.1716 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261329868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:21 Heat of formation + Delta-G solvation = -67.990893 kcal Electronic energy + Delta-G solvation = -16072.768431 eV Core-core repulsion = 13683.788537 eV Total energy + Delta-G solvation = -2388.979894 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.71560 -37.37556 -34.89260 -33.47278 -32.23040 -30.97382 -28.00452 -26.82965 -24.78426 -22.90766 -21.88824 -20.80460 -18.83772 -17.44371 -16.96058 -16.68927 -15.84895 -15.26095 -15.15693 -14.77771 -14.46185 -14.42062 -13.72430 -13.50090 -13.18599 -12.92656 -12.87160 -12.76608 -12.53308 -12.42263 -12.10964 -12.00411 -11.63455 -11.42272 -11.17117 -10.89538 -10.60774 -10.09416 -8.95343 -8.37326 -6.45695 1.26877 1.36192 1.57655 2.33749 2.93454 3.28995 3.56232 4.07397 4.17556 4.23680 4.31684 4.33438 4.46876 4.57946 4.65005 4.77582 4.83178 4.85137 4.95045 5.00286 5.07674 5.08414 5.16061 5.22516 5.36664 5.41900 5.46380 5.60804 5.66060 6.04488 6.14716 6.59091 6.65921 6.93209 7.31098 8.76849 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.017780 C = 0.013753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.655988 B = 1574.456584 C = 2035.377678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.081 3.919 3 C -0.147 4.147 4 O -0.391 6.391 5 C 0.176 3.824 6 C -0.538 4.538 7 H 0.037 0.963 8 C 0.048 3.952 9 N -0.933 5.933 10 Si 0.927 3.073 11 H -0.289 1.289 12 H -0.316 1.316 13 H -0.213 1.213 14 C -0.112 4.112 15 C -0.148 4.148 16 C 0.061 3.939 17 N -0.681 5.681 18 C 0.059 3.941 19 H 0.060 0.940 20 H 0.063 0.937 21 H 0.072 0.928 22 H 0.049 0.951 23 H 0.023 0.977 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.264 0.736 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.343 0.657 34 H 0.063 0.937 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.391 -0.403 6.657 12.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 C -0.204 4.204 4 O -0.311 6.311 5 C 0.136 3.864 6 C -0.576 4.576 7 H 0.056 0.944 8 C -0.152 4.152 9 N -0.573 5.573 10 Si 0.757 3.243 11 H -0.217 1.217 12 H -0.245 1.245 13 H -0.135 1.135 14 C -0.149 4.149 15 C -0.188 4.188 16 C -0.068 4.068 17 N -0.310 5.310 18 C -0.071 4.071 19 H 0.079 0.921 20 H 0.082 0.918 21 H 0.091 0.909 22 H 0.067 0.933 23 H 0.043 0.957 24 H 0.097 0.903 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.162 0.838 34 H 0.082 0.918 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.536 -0.869 6.537 12.430 hybrid contribution 1.747 1.115 0.280 2.091 sum -8.790 0.246 6.817 11.127 Atomic orbital electron populations 1.22232 0.94185 1.02427 1.02537 1.21799 0.93659 0.92431 0.89789 1.21929 0.99778 0.96597 1.02140 1.87859 1.78672 1.32357 1.32217 1.19994 0.91270 0.82642 0.92521 1.21499 1.05792 1.27097 1.03214 0.94433 1.25527 0.94887 0.95613 0.99181 1.70061 1.14760 1.38048 1.34401 0.86341 0.79810 0.76326 0.81862 1.21656 1.24517 1.13509 1.21829 0.97719 0.99755 0.95631 1.22220 0.97344 1.00898 0.98293 1.22046 0.96427 0.97104 0.91269 1.60890 1.28787 1.31185 1.10131 1.22228 0.91442 0.98551 0.94865 0.92095 0.91759 0.90899 0.93303 0.95745 0.90303 0.92112 0.92733 0.91733 0.94751 0.92179 0.90584 0.88697 0.91234 0.83825 0.91808 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.63 9.08 71.98 0.65 -3.98 16 2 C 0.08 3.17 2.31 30.60 0.07 3.24 16 3 C -0.15 -5.50 9.56 71.98 0.69 -4.81 16 4 O -0.39 -16.61 5.81 -148.98 -0.87 -17.47 16 5 C 0.18 7.75 0.26 -11.49 0.00 7.75 16 6 C -0.54 -29.39 6.96 25.60 0.18 -29.21 16 7 H 0.04 2.28 7.99 -2.91 -0.02 2.26 16 8 C 0.05 2.75 5.46 84.65 0.46 3.22 16 9 N -0.93 -57.51 13.96 21.45 0.30 -57.21 16 10 Si 0.93 46.31 22.79 68.60 1.56 47.87 16 11 H -0.29 -14.17 6.95 99.48 0.69 -13.48 16 12 H -0.32 -16.13 7.11 99.48 0.71 -15.42 16 13 H -0.21 -10.05 5.46 99.48 0.54 -9.50 16 14 C -0.11 -4.64 4.39 30.67 0.13 -4.51 16 15 C -0.15 -4.77 5.92 30.65 0.18 -4.59 16 16 C 0.06 1.74 6.55 86.33 0.57 2.30 16 17 N -0.68 -21.78 6.77 -514.00 -3.48 -25.26 16 18 C 0.06 2.30 4.63 86.33 0.40 2.70 16 19 H 0.06 1.78 5.36 -2.39 -0.01 1.76 16 20 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 21 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.05 2.23 6.02 -2.38 -0.01 2.21 16 23 H 0.02 1.05 7.13 -2.39 -0.02 1.03 16 24 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 27 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.03 1.55 3.05 -2.39 -0.01 1.54 16 29 H 0.06 2.00 7.80 -2.39 -0.02 1.98 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 33 H 0.34 10.63 6.66 -89.69 -0.60 10.04 16 34 H 0.06 2.52 6.34 -2.39 -0.02 2.50 16 35 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -62.13 255.93 1.14 -60.99 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.29 Total: 18.97 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 3.33 Total: -27.89 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -3.18 Total: -82.47 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.87 Total: -17.47 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.56 Total: 47.87 kcal Total: -62.13 1.14 -60.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261329868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.999 kcal (2) G-P(sol) polarization free energy of solvation -62.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds