Wall clock time and date at job start Mon Mar 30 2020 04:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46880 * 2 1 4 4 O 1.42904 * 109.47364 * 119.99512 * 2 1 3 5 5 C 1.42893 * 114.00191 * 124.01856 * 4 2 1 6 6 C 1.50695 * 110.27578 * 57.12770 * 5 4 2 7 7 H 1.07998 * 120.00641 * 240.72676 * 6 5 4 8 8 C 1.37882 * 119.99822 * 60.72596 * 6 5 4 9 9 N 1.31513 * 120.00149 * 186.85503 * 8 6 5 10 10 Si 1.86803 * 119.99785 * 6.85048 * 8 6 5 11 11 H 1.48500 * 109.46834 * 85.86275 * 10 8 6 12 12 H 1.48499 * 109.46939 * 205.85469 * 10 8 6 13 13 H 1.48497 * 109.47311 * 325.85843 * 10 8 6 14 14 C 1.54594 * 110.31159 * 179.32586 * 5 4 2 15 15 C 1.54937 * 102.92595 * 140.87091 * 14 5 4 16 16 N 1.48815 * 103.34605 * 322.69602 * 15 14 5 17 17 C 1.46905 * 111.18473 * 159.50436 * 16 15 14 18 18 C 1.47897 * 105.68197 * 38.97017 * 16 15 14 19 19 H 1.08994 * 109.47570 * 300.00435 * 1 2 3 20 20 H 1.08997 * 109.46919 * 60.00611 * 1 2 3 21 21 H 1.09006 * 109.46478 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47570 * 239.99565 * 2 1 3 23 23 H 1.08998 * 109.46933 * 180.48101 * 3 2 1 24 24 H 1.09001 * 109.46842 * 300.48617 * 3 2 1 25 25 H 1.09001 * 109.47341 * 60.48197 * 3 2 1 26 26 H 0.96996 * 119.99680 * 179.97438 * 9 8 6 27 27 H 1.09000 * 110.72757 * 259.23468 * 14 5 4 28 28 H 1.09003 * 110.72351 * 22.51544 * 14 5 4 29 29 H 1.09003 * 110.66553 * 81.01599 * 15 14 5 30 30 H 1.08992 * 110.66979 * 204.15555 * 15 14 5 31 31 H 1.08998 * 109.46950 * 302.66124 * 17 16 15 32 32 H 1.09002 * 109.46862 * 62.66050 * 17 16 15 33 33 H 1.08998 * 109.47006 * 182.65928 * 17 16 15 34 34 H 1.09002 * 109.91862 * 215.45672 * 18 16 15 35 35 H 1.09002 * 109.91364 * 94.36102 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.8887 -1.7628 0.8897 6 6 4.0699 -1.2863 0.0843 7 1 4.2541 -1.6953 -0.8981 8 6 4.9154 -0.3279 0.6016 9 7 5.8648 0.1860 -0.1495 10 14 4.7124 0.2407 2.3694 11 1 5.4572 -0.6735 3.2720 12 1 5.2466 1.6191 2.5105 13 1 3.2721 0.2286 2.7310 14 6 3.3638 -2.4172 2.2073 15 6 3.3647 -3.9279 1.8633 16 7 2.1691 -4.0823 0.9909 17 6 2.2583 -5.3035 0.1792 18 6 2.1412 -2.8771 0.1340 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3632 -1.0278 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 3.1299 1.4426 -0.0086 24 1 1.6695 1.9589 -0.8856 25 1 1.6837 1.9539 0.8943 26 1 6.4594 0.8604 0.2144 27 1 4.3676 -2.0798 2.4655 28 1 2.6648 -2.2063 3.0166 29 1 4.2708 -4.1985 1.3211 30 1 3.2622 -4.5283 2.7672 31 1 3.1703 -5.2775 -0.4172 32 1 2.2771 -6.1745 0.8342 33 1 1.3936 -5.3644 -0.4817 34 1 1.1099 -2.5749 -0.0482 35 1 2.6404 -3.0832 -0.8128 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261330937.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:24 Heat of formation + Delta-G solvation = -36.002662 kcal Electronic energy + Delta-G solvation = -15758.854350 eV Core-core repulsion = 13371.261570 eV Total energy + Delta-G solvation = -2387.592780 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.84487 -36.26549 -32.90020 -31.79902 -30.12760 -27.93793 -26.56670 -25.76870 -23.54931 -21.16832 -20.14238 -19.14807 -16.90641 -15.64364 -15.35377 -14.62273 -13.84355 -13.74878 -13.57348 -13.28255 -12.65726 -12.62037 -12.23809 -12.05990 -11.60057 -11.47738 -11.22450 -10.98172 -10.83620 -10.66000 -10.53941 -10.31638 -9.98628 -9.80955 -9.58604 -8.88822 -8.60505 -8.13364 -7.81148 -6.18763 -4.27296 3.31566 3.43686 3.65903 4.45597 4.63616 4.82765 5.17667 5.52892 5.57862 5.77164 5.80107 5.92268 5.97752 6.05711 6.10067 6.15084 6.24126 6.28585 6.34124 6.45116 6.48860 6.57705 6.67069 6.74561 6.84916 6.94385 7.16547 7.24738 7.34408 7.58242 7.70708 8.18117 8.73428 8.82703 9.46445 10.91203 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024695 B = 0.016643 C = 0.012300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.564373 B = 1681.938427 C = 2275.852604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.097 3.903 3 C -0.159 4.159 4 O -0.383 6.383 5 C 0.202 3.798 6 C -0.543 4.543 7 H 0.073 0.927 8 C 0.093 3.907 9 N -0.887 5.887 10 Si 0.866 3.134 11 H -0.285 1.285 12 H -0.300 1.300 13 H -0.224 1.224 14 C -0.118 4.118 15 C 0.045 3.955 16 N -0.524 5.524 17 C 0.018 3.982 18 C 0.025 3.975 19 H 0.052 0.948 20 H 0.053 0.947 21 H 0.051 0.949 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.265 0.735 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.026 0.974 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.928 -3.969 1.547 8.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 C -0.217 4.217 4 O -0.303 6.303 5 C 0.163 3.837 6 C -0.580 4.580 7 H 0.091 0.909 8 C -0.112 4.112 9 N -0.523 5.523 10 Si 0.694 3.306 11 H -0.213 1.213 12 H -0.228 1.228 13 H -0.146 1.146 14 C -0.156 4.156 15 C -0.083 4.083 16 N -0.249 5.249 17 C -0.131 4.131 18 C -0.103 4.103 19 H 0.071 0.929 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.338 -3.849 2.009 8.526 hybrid contribution 0.977 0.308 0.018 1.024 sum -6.361 -3.541 2.027 7.558 Atomic orbital electron populations 1.22152 0.97145 1.01308 1.00923 1.21513 0.91102 0.92828 0.90680 1.22121 1.03274 0.96500 0.99778 1.87944 1.64797 1.46857 1.30665 1.20223 0.88194 0.83683 0.91618 1.21263 1.09051 1.23880 1.03849 0.90889 1.24913 0.93892 0.94554 0.97846 1.69946 1.18560 1.27350 1.36461 0.87215 0.81530 0.76600 0.85284 1.21267 1.22779 1.14650 1.22701 1.00825 0.93802 0.98269 1.23120 0.91706 0.96851 0.96575 1.64792 1.38457 1.02123 1.19482 1.22460 1.00166 0.93479 0.97003 1.23515 1.00137 0.91042 0.95560 0.92920 0.92818 0.92948 0.91452 0.90911 0.93408 0.93730 0.92499 0.90941 0.91871 0.93417 0.91178 0.95520 0.92093 0.92070 0.91416 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.52 37.16 0.35 -2.31 16 2 C 0.10 2.01 2.12 -26.73 -0.06 1.96 16 3 C -0.16 -3.25 9.46 37.16 0.35 -2.90 16 4 O -0.38 -8.94 7.07 -35.23 -0.25 -9.19 16 5 C 0.20 4.72 0.47 -90.42 -0.04 4.68 16 6 C -0.54 -14.57 7.42 -34.44 -0.26 -14.83 16 7 H 0.07 2.14 7.59 -52.49 -0.40 1.74 16 8 C 0.09 2.57 4.23 -17.82 -0.08 2.50 16 9 N -0.89 -26.10 13.96 55.43 0.77 -25.32 16 10 Si 0.87 21.72 23.16 -169.99 -3.94 17.79 16 11 H -0.29 -7.01 6.77 56.52 0.38 -6.63 16 12 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 13 H -0.22 -5.55 5.60 56.52 0.32 -5.23 16 14 C -0.12 -2.61 4.70 -24.87 -0.12 -2.73 16 15 C 0.05 0.87 6.58 -1.74 -0.01 0.86 16 16 N -0.52 -9.98 5.56 -238.46 -1.33 -11.31 16 17 C 0.02 0.28 9.41 60.07 0.57 0.85 16 18 C 0.03 0.53 5.37 -2.75 -0.01 0.52 16 19 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 20 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.05 0.86 7.21 -51.93 -0.37 0.49 16 22 H 0.07 1.48 6.55 -51.93 -0.34 1.14 16 23 H 0.07 1.72 6.08 -51.93 -0.32 1.40 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.07 1.70 4.49 -51.93 -0.23 1.47 16 28 H 0.06 1.36 8.08 -51.93 -0.42 0.94 16 29 H 0.05 0.93 7.97 -51.93 -0.41 0.52 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.03 0.42 8.01 -51.93 -0.42 0.01 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.37 6.44 -51.93 -0.33 1.04 16 35 H 0.05 0.98 6.98 -51.93 -0.36 0.61 16 LS Contribution 263.19 15.07 3.97 3.97 Total: -1.00 -28.99 263.19 -5.88 -34.87 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.81 Total: 0.62 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 0.70 Total: -11.42 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: -0.55 Total: -36.63 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.25 Total: -9.19 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -3.94 Total: 17.79 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.99 -5.88 -34.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261330937.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.128 kcal (2) G-P(sol) polarization free energy of solvation -28.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds