Wall clock time and date at job start Mon Mar 30 2020 04:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46880 * 2 1 4 4 O 1.42904 * 109.47364 * 119.99512 * 2 1 3 5 5 C 1.42893 * 114.00191 * 124.01856 * 4 2 1 6 6 C 1.50695 * 110.27578 * 57.12770 * 5 4 2 7 7 H 1.07998 * 120.00641 * 240.72676 * 6 5 4 8 8 C 1.37882 * 119.99822 * 60.72596 * 6 5 4 9 9 N 1.31513 * 120.00149 * 186.85503 * 8 6 5 10 10 Si 1.86803 * 119.99785 * 6.85048 * 8 6 5 11 11 H 1.48500 * 109.46834 * 85.86275 * 10 8 6 12 12 H 1.48499 * 109.46939 * 205.85469 * 10 8 6 13 13 H 1.48497 * 109.47311 * 325.85843 * 10 8 6 14 14 C 1.54594 * 110.31159 * 179.32586 * 5 4 2 15 15 C 1.54937 * 102.92595 * 140.87091 * 14 5 4 16 16 N 1.48815 * 103.34605 * 322.69602 * 15 14 5 17 17 C 1.46905 * 111.18473 * 159.50436 * 16 15 14 18 18 C 1.47897 * 105.68197 * 38.97017 * 16 15 14 19 19 H 1.08994 * 109.47570 * 300.00435 * 1 2 3 20 20 H 1.08997 * 109.46919 * 60.00611 * 1 2 3 21 21 H 1.09006 * 109.46478 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47570 * 239.99565 * 2 1 3 23 23 H 1.08998 * 109.46933 * 180.48101 * 3 2 1 24 24 H 1.09001 * 109.46842 * 300.48617 * 3 2 1 25 25 H 1.09001 * 109.47341 * 60.48197 * 3 2 1 26 26 H 0.96996 * 119.99680 * 179.97438 * 9 8 6 27 27 H 1.09000 * 110.72757 * 259.23468 * 14 5 4 28 28 H 1.09003 * 110.72351 * 22.51544 * 14 5 4 29 29 H 1.09003 * 110.66553 * 81.01599 * 15 14 5 30 30 H 1.08992 * 110.66979 * 204.15555 * 15 14 5 31 31 H 1.08998 * 109.46950 * 302.66124 * 17 16 15 32 32 H 1.09002 * 109.46862 * 62.66050 * 17 16 15 33 33 H 1.08998 * 109.47006 * 182.65928 * 17 16 15 34 34 H 1.09002 * 109.91862 * 215.45672 * 18 16 15 35 35 H 1.09002 * 109.91364 * 94.36102 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.8887 -1.7628 0.8897 6 6 4.0699 -1.2863 0.0843 7 1 4.2541 -1.6953 -0.8981 8 6 4.9154 -0.3279 0.6016 9 7 5.8648 0.1860 -0.1495 10 14 4.7124 0.2407 2.3694 11 1 5.4572 -0.6735 3.2720 12 1 5.2466 1.6191 2.5105 13 1 3.2721 0.2286 2.7310 14 6 3.3638 -2.4172 2.2073 15 6 3.3647 -3.9279 1.8633 16 7 2.1691 -4.0823 0.9909 17 6 2.2583 -5.3035 0.1792 18 6 2.1412 -2.8771 0.1340 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3632 -1.0278 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 3.1299 1.4426 -0.0086 24 1 1.6695 1.9589 -0.8856 25 1 1.6837 1.9539 0.8943 26 1 6.4594 0.8604 0.2144 27 1 4.3676 -2.0798 2.4655 28 1 2.6648 -2.2063 3.0166 29 1 4.2708 -4.1985 1.3211 30 1 3.2622 -4.5283 2.7672 31 1 3.1703 -5.2775 -0.4172 32 1 2.2771 -6.1745 0.8342 33 1 1.3936 -5.3644 -0.4817 34 1 1.1099 -2.5749 -0.0482 35 1 2.6404 -3.0832 -0.8128 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261330937.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:23 Heat of formation + Delta-G solvation = -57.263797 kcal Electronic energy + Delta-G solvation = -15759.776302 eV Core-core repulsion = 13371.261570 eV Total energy + Delta-G solvation = -2388.514732 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.54910 -37.88278 -34.84097 -33.59743 -31.75370 -29.67097 -28.15442 -27.40864 -25.28240 -22.76196 -21.84115 -20.89072 -18.87028 -17.35972 -17.25155 -16.25179 -15.49868 -15.43306 -15.18068 -14.98391 -14.53480 -14.10025 -13.95400 -13.74570 -13.18421 -12.99675 -12.73217 -12.63727 -12.43893 -12.38541 -12.24024 -12.12164 -11.79229 -11.54924 -11.35816 -10.83596 -10.69663 -9.92078 -9.36382 -8.36581 -6.46602 1.30094 1.38553 1.62722 2.37006 2.91725 3.16155 3.28298 3.93872 4.02132 4.27937 4.35303 4.41081 4.48839 4.55265 4.59003 4.67028 4.76797 4.80042 4.84180 4.91309 4.97596 5.01547 5.12295 5.15390 5.18210 5.30195 5.48033 5.54169 5.61361 5.87620 6.07213 6.15617 6.61226 6.91808 7.30808 8.77206 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024695 B = 0.016643 C = 0.012300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.564373 B = 1681.938427 C = 2275.852604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.089 3.911 3 C -0.157 4.157 4 O -0.394 6.394 5 C 0.197 3.803 6 C -0.535 4.535 7 H 0.033 0.967 8 C 0.054 3.946 9 N -0.931 5.931 10 Si 0.915 3.085 11 H -0.276 1.276 12 H -0.307 1.307 13 H -0.216 1.216 14 C -0.123 4.123 15 C 0.049 3.951 16 N -0.525 5.525 17 C 0.017 3.983 18 C 0.034 3.966 19 H 0.059 0.941 20 H 0.079 0.921 21 H 0.056 0.944 22 H 0.046 0.954 23 H 0.033 0.967 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.265 0.735 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.103 0.897 31 H 0.018 0.982 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.903 -4.811 2.713 10.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.031 3.969 3 C -0.215 4.215 4 O -0.314 6.314 5 C 0.158 3.842 6 C -0.572 4.572 7 H 0.052 0.948 8 C -0.147 4.147 9 N -0.570 5.570 10 Si 0.742 3.258 11 H -0.203 1.203 12 H -0.235 1.235 13 H -0.138 1.138 14 C -0.161 4.161 15 C -0.078 4.078 16 N -0.249 5.249 17 C -0.132 4.132 18 C -0.094 4.094 19 H 0.079 0.921 20 H 0.097 0.903 21 H 0.075 0.925 22 H 0.064 0.936 23 H 0.052 0.948 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.121 0.879 31 H 0.037 0.963 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -9.327 -4.712 3.175 10.921 hybrid contribution 1.574 0.553 -0.446 1.727 sum -7.753 -4.159 2.729 9.211 Atomic orbital electron populations 1.22043 0.93553 1.02196 1.02584 1.21739 0.93846 0.92315 0.89005 1.22099 1.00727 0.96989 1.01671 1.87892 1.64553 1.47080 1.31864 1.20191 0.87245 0.84458 0.92306 1.21385 1.10205 1.23117 1.02497 0.94840 1.25489 0.93612 0.94751 1.00809 1.70053 1.20079 1.28685 1.38144 0.86440 0.81833 0.75806 0.81761 1.20264 1.23548 1.13782 1.22705 0.99923 0.95746 0.97706 1.23148 0.91520 0.95299 0.97847 1.64842 1.38167 1.02382 1.19501 1.22572 1.00460 0.92739 0.97408 1.23322 0.99915 0.91382 0.94803 0.92150 0.90250 0.92472 0.93602 0.94792 0.90731 0.92627 0.92554 0.92623 0.90878 0.94391 0.87857 0.96346 0.89402 0.90608 0.90548 0.95329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.51 9.52 71.98 0.68 -3.83 16 2 C 0.09 3.58 2.12 30.60 0.06 3.65 16 3 C -0.16 -6.28 9.46 71.98 0.68 -5.60 16 4 O -0.39 -17.89 7.07 -148.98 -1.05 -18.94 16 5 C 0.20 9.12 0.47 -10.66 0.00 9.11 16 6 C -0.53 -29.41 7.42 25.60 0.19 -29.22 16 7 H 0.03 2.06 7.59 -2.91 -0.02 2.04 16 8 C 0.05 3.06 4.23 84.66 0.36 3.42 16 9 N -0.93 -56.66 13.96 21.45 0.30 -56.36 16 10 Si 0.92 45.19 23.16 68.60 1.59 46.77 16 11 H -0.28 -13.08 6.77 99.48 0.67 -12.40 16 12 H -0.31 -15.38 7.11 99.48 0.71 -14.67 16 13 H -0.22 -10.28 5.60 99.48 0.56 -9.72 16 14 C -0.12 -5.24 4.70 31.80 0.15 -5.09 16 15 C 0.05 1.78 6.58 86.59 0.57 2.35 16 16 N -0.52 -18.67 5.56 -908.37 -5.05 -23.72 16 17 C 0.02 0.47 9.41 127.69 1.20 1.68 16 18 C 0.03 1.40 5.37 86.45 0.46 1.86 16 19 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 20 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 21 H 0.06 1.70 7.21 -2.38 -0.02 1.69 16 22 H 0.05 2.03 6.55 -2.39 -0.02 2.01 16 23 H 0.03 1.60 6.08 -2.39 -0.01 1.59 16 24 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 27 H 0.06 2.54 4.49 -2.39 -0.01 2.53 16 28 H 0.07 2.96 8.08 -2.39 -0.02 2.94 16 29 H 0.04 1.43 7.97 -2.39 -0.02 1.42 16 30 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.02 0.55 8.01 -2.39 -0.02 0.53 16 32 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.08 2.97 6.44 -2.39 -0.02 2.95 16 35 H 0.03 1.24 6.98 -2.39 -0.02 1.22 16 Total: -1.00 -62.94 263.19 1.00 -61.93 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.86 Total: 11.99 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 4.36 Total: -21.68 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -4.75 Total: -80.08 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -1.05 Total: -18.94 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.59 Total: 46.77 kcal Total: -62.94 1.00 -61.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261330937.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.669 kcal (2) G-P(sol) polarization free energy of solvation -62.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds