Wall clock time and date at job start Mon Mar 30 2020 04:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46847 * 2 1 4 4 O 1.42897 * 109.47430 * 239.99806 * 2 1 3 5 5 C 1.42895 * 114.00195 * 221.36932 * 4 2 1 6 6 C 1.50699 * 110.27452 * 56.21190 * 5 4 2 7 7 H 1.08001 * 120.00475 * 238.09546 * 6 5 4 8 8 C 1.37874 * 119.99954 * 58.09909 * 6 5 4 9 9 N 1.31522 * 119.99868 * 4.96734 * 8 6 5 10 10 Si 1.86803 * 120.00320 * 184.97118 * 8 6 5 11 11 H 1.48495 * 109.46701 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47083 * 120.00000 * 10 8 6 13 13 H 1.48499 * 109.46963 * 239.99878 * 10 8 6 14 14 C 1.54601 * 110.30880 * 294.01909 * 5 4 2 15 15 C 1.54936 * 102.92152 * 219.12546 * 14 5 4 16 16 N 1.48533 * 103.22830 * 37.41502 * 15 14 5 17 17 C 1.46896 * 111.00087 * 200.27896 * 16 15 14 18 18 C 1.47903 * 105.81657 * 320.79312 * 16 15 14 19 19 H 1.09007 * 109.47144 * 60.00040 * 1 2 3 20 20 H 1.09000 * 109.47491 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47659 * 300.00065 * 1 2 3 22 22 H 1.09006 * 109.46954 * 119.99442 * 2 1 3 23 23 H 1.09000 * 109.47491 * 54.54218 * 3 2 1 24 24 H 1.09005 * 109.46770 * 174.53872 * 3 2 1 25 25 H 1.09001 * 109.46984 * 294.53884 * 3 2 1 26 26 H 0.97003 * 120.00015 * 180.02562 * 9 8 6 27 27 H 1.08997 * 110.72272 * 337.48281 * 14 5 4 28 28 H 1.08999 * 110.72081 * 100.76843 * 14 5 4 29 29 H 1.09008 * 110.66693 * 278.97958 * 15 14 5 30 30 H 1.08995 * 110.80997 * 155.91725 * 15 14 5 31 31 H 1.08999 * 109.47022 * 177.39289 * 17 16 15 32 32 H 1.08998 * 109.47073 * 297.39974 * 17 16 15 33 33 H 1.09007 * 109.47227 * 57.39336 * 17 16 15 34 34 H 1.09003 * 109.91479 * 265.97473 * 18 16 15 35 35 H 1.08997 * 109.91288 * 144.68779 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 3.1237 -1.5315 -0.9270 6 6 2.7868 -2.5424 0.1386 7 1 3.3831 -2.5989 1.0373 8 6 1.7175 -3.3955 -0.0339 9 7 1.0516 -3.3943 -1.1681 10 14 1.2142 -4.5528 1.3434 11 1 2.1175 -4.3605 2.5063 12 1 -0.1843 -4.2614 1.7486 13 1 1.3100 -5.9570 0.8697 14 6 4.3586 -0.7002 -0.5098 15 6 5.5221 -1.4186 -1.2382 16 7 4.9190 -1.8108 -2.5377 17 6 5.6829 -2.8967 -3.1663 18 6 3.5393 -2.2439 -2.2274 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8933 -0.5138 0.8901 23 1 1.5990 1.9839 0.8371 24 1 3.1255 1.4441 0.0978 25 1 1.7586 1.9273 -0.9349 26 1 0.2990 -3.9942 -1.2893 27 1 4.2649 0.3295 -0.8547 28 1 4.4999 -0.7350 0.5705 29 1 5.8400 -2.2995 -0.6802 30 1 6.3605 -0.7395 -1.3926 31 1 5.1937 -3.1957 -4.0933 32 1 6.6936 -2.5513 -3.3838 33 1 5.7283 -3.7489 -2.4881 34 1 3.5127 -3.3241 -2.0839 35 1 2.8692 -1.9578 -3.0381 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261330938.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:26 Heat of formation + Delta-G solvation = -45.391538 kcal Electronic energy + Delta-G solvation = -15662.588051 eV Core-core repulsion = 13274.588138 eV Total energy + Delta-G solvation = -2387.999913 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.45268 -36.00113 -32.75240 -31.37676 -30.08742 -27.32371 -26.35229 -25.58778 -23.65810 -20.53121 -19.82989 -19.25153 -16.74188 -15.45401 -14.71612 -14.46147 -13.88349 -13.66686 -13.35755 -13.26611 -12.43393 -12.20442 -11.84621 -11.56808 -11.46231 -11.14109 -11.03531 -10.98360 -10.73959 -10.58640 -10.45115 -10.40399 -10.25269 -9.52245 -9.44859 -8.85148 -8.54172 -7.89337 -7.49341 -6.05730 -4.20628 3.22179 3.31816 3.34565 4.34273 4.92056 5.09584 5.35697 5.75063 5.83383 5.91432 5.97594 6.06546 6.13527 6.23213 6.28823 6.35821 6.39236 6.49807 6.57233 6.62955 6.75697 6.88008 6.90203 7.01521 7.20433 7.24699 7.31819 7.55849 7.76252 7.76916 7.96202 8.23044 8.80603 9.12941 9.52259 10.97342 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.021721 B = 0.016284 C = 0.011071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.788220 B = 1719.014137 C = 2528.580626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.094 3.906 3 C -0.170 4.170 4 O -0.364 6.364 5 C 0.237 3.763 6 C -0.554 4.554 7 H 0.057 0.943 8 C 0.084 3.916 9 N -0.850 5.850 10 Si 0.880 3.120 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.284 1.284 14 C -0.148 4.148 15 C 0.043 3.957 16 N -0.533 5.533 17 C 0.021 3.979 18 C 0.077 3.923 19 H 0.045 0.955 20 H 0.062 0.938 21 H 0.043 0.957 22 H 0.069 0.931 23 H 0.046 0.954 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.260 0.740 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.023 0.977 34 H 0.055 0.945 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 3.458 0.942 5.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.036 3.964 3 C -0.228 4.228 4 O -0.282 6.282 5 C 0.198 3.802 6 C -0.592 4.592 7 H 0.075 0.925 8 C -0.122 4.122 9 N -0.485 5.485 10 Si 0.707 3.293 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.210 1.210 14 C -0.186 4.186 15 C -0.085 4.085 16 N -0.258 5.258 17 C -0.128 4.128 18 C -0.050 4.050 19 H 0.064 0.936 20 H 0.081 0.919 21 H 0.062 0.938 22 H 0.087 0.913 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.325 3.822 0.260 5.072 hybrid contribution -0.219 -1.483 1.530 2.142 sum 3.106 2.339 1.790 4.280 Atomic orbital electron populations 1.21819 0.96537 1.02143 0.99487 1.21496 0.92896 0.90157 0.91895 1.22427 1.01028 0.98730 1.00567 1.87882 1.49679 1.59975 1.30698 1.19735 0.81843 0.86489 0.92095 1.21470 1.14800 1.18543 1.04362 0.92521 1.24960 0.96074 0.96106 0.95087 1.70066 1.19276 1.36158 1.23005 0.86747 0.78727 0.80939 0.82899 1.19724 1.20735 1.20973 1.23269 0.97214 0.99279 0.98863 1.23009 0.97012 0.98357 0.90146 1.64818 1.04015 1.35086 1.21841 1.22402 0.97925 0.93228 0.99232 1.22606 0.86114 0.98476 0.97838 0.93613 0.91880 0.93845 0.91332 0.93522 0.92902 0.93148 0.92988 0.91955 0.92269 0.94318 0.92089 0.92108 0.92646 0.95827 0.92636 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.56 37.16 0.36 -2.54 16 2 C 0.09 2.06 2.70 -26.73 -0.07 1.98 16 3 C -0.17 -3.09 9.22 37.16 0.34 -2.75 16 4 O -0.36 -9.17 9.02 -35.23 -0.32 -9.48 16 5 C 0.24 5.83 0.54 -90.42 -0.05 5.78 16 6 C -0.55 -14.51 6.23 -34.44 -0.21 -14.72 16 7 H 0.06 1.49 7.54 -52.49 -0.40 1.10 16 8 C 0.08 2.23 5.11 -17.82 -0.09 2.14 16 9 N -0.85 -23.34 11.97 55.43 0.66 -22.67 16 10 Si 0.88 20.51 29.54 -169.99 -5.02 15.49 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C -0.15 -3.17 5.16 -24.87 -0.13 -3.29 16 15 C 0.04 0.85 6.56 -1.90 -0.01 0.83 16 16 N -0.53 -11.25 5.55 -238.72 -1.33 -12.57 16 17 C 0.02 0.38 9.40 60.06 0.56 0.94 16 18 C 0.08 1.87 5.29 -2.76 -0.01 1.86 16 19 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 20 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 21 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.07 1.60 6.49 -51.93 -0.34 1.26 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.94 5.97 -51.93 -0.31 0.63 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.06 1.30 6.27 -51.93 -0.33 0.97 16 28 H 0.06 1.23 7.67 -51.93 -0.40 0.83 16 29 H 0.04 0.77 7.96 -51.92 -0.41 0.36 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.02 0.42 8.00 -51.93 -0.42 0.01 16 34 H 0.06 1.46 6.88 -51.93 -0.36 1.10 16 35 H 0.07 1.77 7.96 -51.93 -0.41 1.36 16 LS Contribution 275.35 15.07 4.15 4.15 Total: -1.00 -27.69 275.35 -7.05 -34.74 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.88 Total: 0.11 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 0.68 Total: -9.77 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: -0.66 Total: -35.25 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.32 Total: -9.48 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.69 -7.05 -34.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261330938.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.649 kcal (2) G-P(sol) polarization free energy of solvation -27.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds