Wall clock time and date at job start Mon Mar 30 2020 04:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46847 * 2 1 4 4 O 1.42897 * 109.47430 * 239.99806 * 2 1 3 5 5 C 1.42895 * 114.00195 * 221.36932 * 4 2 1 6 6 C 1.50699 * 110.27452 * 56.21190 * 5 4 2 7 7 H 1.08001 * 120.00475 * 238.09546 * 6 5 4 8 8 C 1.37874 * 119.99954 * 58.09909 * 6 5 4 9 9 N 1.31522 * 119.99868 * 4.96734 * 8 6 5 10 10 Si 1.86803 * 120.00320 * 184.97118 * 8 6 5 11 11 H 1.48495 * 109.46701 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47083 * 120.00000 * 10 8 6 13 13 H 1.48499 * 109.46963 * 239.99878 * 10 8 6 14 14 C 1.54601 * 110.30880 * 294.01909 * 5 4 2 15 15 C 1.54936 * 102.92152 * 219.12546 * 14 5 4 16 16 N 1.48533 * 103.22830 * 37.41502 * 15 14 5 17 17 C 1.46896 * 111.00087 * 200.27896 * 16 15 14 18 18 C 1.47903 * 105.81657 * 320.79312 * 16 15 14 19 19 H 1.09007 * 109.47144 * 60.00040 * 1 2 3 20 20 H 1.09000 * 109.47491 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47659 * 300.00065 * 1 2 3 22 22 H 1.09006 * 109.46954 * 119.99442 * 2 1 3 23 23 H 1.09000 * 109.47491 * 54.54218 * 3 2 1 24 24 H 1.09005 * 109.46770 * 174.53872 * 3 2 1 25 25 H 1.09001 * 109.46984 * 294.53884 * 3 2 1 26 26 H 0.97003 * 120.00015 * 180.02562 * 9 8 6 27 27 H 1.08997 * 110.72272 * 337.48281 * 14 5 4 28 28 H 1.08999 * 110.72081 * 100.76843 * 14 5 4 29 29 H 1.09008 * 110.66693 * 278.97958 * 15 14 5 30 30 H 1.08995 * 110.80997 * 155.91725 * 15 14 5 31 31 H 1.08999 * 109.47022 * 177.39289 * 17 16 15 32 32 H 1.08998 * 109.47073 * 297.39974 * 17 16 15 33 33 H 1.09007 * 109.47227 * 57.39336 * 17 16 15 34 34 H 1.09003 * 109.91479 * 265.97473 * 18 16 15 35 35 H 1.08997 * 109.91288 * 144.68779 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 3.1237 -1.5315 -0.9270 6 6 2.7868 -2.5424 0.1386 7 1 3.3831 -2.5989 1.0373 8 6 1.7175 -3.3955 -0.0339 9 7 1.0516 -3.3943 -1.1681 10 14 1.2142 -4.5528 1.3434 11 1 2.1175 -4.3605 2.5063 12 1 -0.1843 -4.2614 1.7486 13 1 1.3100 -5.9570 0.8697 14 6 4.3586 -0.7002 -0.5098 15 6 5.5221 -1.4186 -1.2382 16 7 4.9190 -1.8108 -2.5377 17 6 5.6829 -2.8967 -3.1663 18 6 3.5393 -2.2439 -2.2274 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8933 -0.5138 0.8901 23 1 1.5990 1.9839 0.8371 24 1 3.1255 1.4441 0.0978 25 1 1.7586 1.9273 -0.9349 26 1 0.2990 -3.9942 -1.2893 27 1 4.2649 0.3295 -0.8547 28 1 4.4999 -0.7350 0.5705 29 1 5.8400 -2.2995 -0.6802 30 1 6.3605 -0.7395 -1.3926 31 1 5.1937 -3.1957 -4.0933 32 1 6.6936 -2.5513 -3.3838 33 1 5.7283 -3.7489 -2.4881 34 1 3.5127 -3.3241 -2.0839 35 1 2.8692 -1.9578 -3.0381 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261330938.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:26 Heat of formation + Delta-G solvation = -63.776890 kcal Electronic energy + Delta-G solvation = -15663.385299 eV Core-core repulsion = 13274.588138 eV Total energy + Delta-G solvation = -2388.797161 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.22683 -37.71784 -34.67232 -33.14700 -31.76747 -29.16469 -27.89421 -27.42304 -25.38607 -22.18866 -21.56314 -21.10539 -18.66381 -17.21761 -16.69004 -16.15732 -15.59216 -15.32736 -15.05014 -14.93868 -14.09134 -13.88595 -13.58464 -13.25692 -13.01973 -12.88857 -12.86142 -12.71882 -12.42361 -12.27352 -12.20238 -12.12067 -11.98767 -11.26194 -11.21312 -10.79397 -10.49257 -9.70648 -9.23200 -8.07672 -6.27943 1.35172 1.39835 1.48130 2.39159 3.12477 3.28033 3.57736 4.12914 4.22253 4.35189 4.46334 4.51410 4.61974 4.66916 4.71305 4.82904 4.88348 4.91824 4.97436 5.05225 5.06449 5.14089 5.19292 5.31462 5.44634 5.50987 5.62923 5.67645 5.78216 5.95021 6.25340 6.31479 6.80674 7.25560 7.50963 8.94591 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.021721 B = 0.016284 C = 0.011071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.788220 B = 1719.014137 C = 2528.580626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.086 3.914 3 C -0.159 4.159 4 O -0.390 6.390 5 C 0.226 3.774 6 C -0.560 4.560 7 H 0.050 0.950 8 C 0.045 3.955 9 N -0.877 5.877 10 Si 0.934 3.066 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.283 1.283 14 C -0.141 4.141 15 C 0.046 3.954 16 N -0.538 5.538 17 C 0.021 3.979 18 C 0.090 3.910 19 H 0.049 0.951 20 H 0.029 0.971 21 H 0.076 0.924 22 H 0.049 0.951 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.258 0.742 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.018 0.982 34 H 0.027 0.973 35 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.559 4.399 1.688 6.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.028 3.972 3 C -0.217 4.217 4 O -0.309 6.309 5 C 0.188 3.812 6 C -0.598 4.598 7 H 0.068 0.932 8 C -0.159 4.159 9 N -0.513 5.513 10 Si 0.760 3.240 11 H -0.192 1.192 12 H -0.206 1.206 13 H -0.209 1.209 14 C -0.179 4.179 15 C -0.081 4.081 16 N -0.263 5.263 17 C -0.128 4.128 18 C -0.038 4.038 19 H 0.068 0.932 20 H 0.049 0.951 21 H 0.095 0.905 22 H 0.067 0.933 23 H 0.094 0.906 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.037 0.963 34 H 0.045 0.955 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.331 4.766 1.015 6.520 hybrid contribution -0.517 -1.759 1.288 2.240 sum 3.814 3.007 2.303 5.375 Atomic orbital electron populations 1.21782 0.95761 1.00549 1.01315 1.21707 0.93643 0.91823 0.90014 1.22293 1.01250 0.96216 1.01891 1.87830 1.50280 1.60390 1.32447 1.19814 0.82978 0.86852 0.91602 1.21666 1.14699 1.18998 1.04447 0.93194 1.25546 0.96181 0.97410 0.96749 1.70180 1.19665 1.36980 1.24511 0.85895 0.78314 0.79145 0.80662 1.19210 1.20604 1.20876 1.23166 0.96303 0.99235 0.99201 1.23077 0.97190 0.98707 0.89173 1.64790 1.02776 1.36198 1.22553 1.22491 0.99156 0.92274 0.98854 1.22300 0.87924 0.96653 0.96933 0.93218 0.95140 0.90505 0.93265 0.90625 0.92676 0.93002 0.93231 0.91322 0.92012 0.94571 0.88763 0.91813 0.89349 0.96350 0.95486 0.94348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.46 9.56 71.98 0.69 -4.77 16 2 C 0.09 3.71 2.70 30.59 0.08 3.79 16 3 C -0.16 -5.43 9.22 71.98 0.66 -4.76 16 4 O -0.39 -19.82 9.02 -148.98 -1.34 -21.16 16 5 C 0.23 11.18 0.54 -10.66 -0.01 11.17 16 6 C -0.56 -29.61 6.23 25.60 0.16 -29.45 16 7 H 0.05 2.64 7.54 -2.91 -0.02 2.62 16 8 C 0.05 2.42 5.11 84.65 0.43 2.85 16 9 N -0.88 -49.43 11.97 21.45 0.26 -49.18 16 10 Si 0.93 42.47 29.54 68.60 2.03 44.50 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 C -0.14 -5.84 5.16 31.80 0.16 -5.68 16 15 C 0.05 1.73 6.56 86.65 0.57 2.30 16 16 N -0.54 -22.11 5.55 -909.17 -5.05 -27.16 16 17 C 0.02 0.71 9.40 127.69 1.20 1.91 16 18 C 0.09 4.46 5.29 86.44 0.46 4.92 16 19 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 20 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 21 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 22 H 0.05 2.28 6.49 -2.38 -0.02 2.27 16 23 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.05 1.84 5.97 -2.38 -0.01 1.82 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 27 H 0.07 2.73 6.27 -2.39 -0.01 2.72 16 28 H 0.06 2.49 7.67 -2.39 -0.02 2.47 16 29 H 0.04 1.37 7.96 -2.38 -0.02 1.35 16 30 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.02 0.63 8.00 -2.38 -0.02 0.61 16 34 H 0.03 1.46 6.88 -2.39 -0.02 1.44 16 35 H 0.04 2.08 7.96 -2.39 -0.02 2.06 16 Total: -1.00 -59.62 275.35 1.34 -58.29 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 1.04 Total: 12.44 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 4.41 Total: -17.72 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: -4.79 Total: -76.34 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -1.34 Total: -21.16 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -59.62 1.34 -58.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261330938.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.491 kcal (2) G-P(sol) polarization free energy of solvation -59.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds