Wall clock time and date at job start Mon Mar 30 2020 04:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45593 * 2 1 4 4 C 1.53035 * 109.46287 * 119.97353 * 2 1 3 5 5 C 1.53119 * 109.28189 * 179.19251 * 4 2 1 6 6 C 1.53119 * 109.15841 * 302.34384 * 5 4 2 7 7 H 1.08997 * 109.50486 * 297.71331 * 6 5 4 8 8 O 1.42898 * 109.53496 * 177.60702 * 6 5 4 9 9 C 1.53043 * 109.27690 * 57.65438 * 6 5 4 10 10 N 1.46846 * 109.52062 * 300.81727 * 9 6 5 11 11 C 1.46902 * 110.99642 * 185.83761 * 10 9 6 12 12 C 1.52998 * 109.46983 * 66.28457 * 11 10 9 13 13 C 1.50703 * 109.47227 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99992 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99793 * 180.02562 * 13 12 11 16 16 N 1.31507 * 120.00285 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99519 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47043 * 89.99878 * 17 15 13 19 19 H 1.48505 * 109.46691 * 209.99888 * 17 15 13 20 20 H 1.48493 * 109.47206 * 329.99706 * 17 15 13 21 21 H 1.08993 * 109.47142 * 172.47546 * 1 2 3 22 22 H 1.09003 * 109.46619 * 292.47086 * 1 2 3 23 23 H 1.08995 * 109.47269 * 52.46934 * 1 2 3 24 24 H 1.09006 * 109.50714 * 59.25085 * 4 2 1 25 25 H 1.09004 * 109.53417 * 299.15628 * 4 2 1 26 26 H 1.09003 * 109.52709 * 182.44100 * 5 4 2 27 27 H 1.09001 * 109.57120 * 62.28290 * 5 4 2 28 28 H 0.96703 * 113.99516 * 60.18332 * 8 6 5 29 29 H 1.09002 * 109.46426 * 180.79997 * 9 6 5 30 30 H 1.08999 * 109.46534 * 60.83482 * 9 6 5 31 31 H 1.09003 * 109.46857 * 186.28138 * 11 10 9 32 32 H 1.08997 * 109.47525 * 306.28614 * 11 10 9 33 33 H 1.09004 * 109.47423 * 299.99956 * 12 11 10 34 34 H 1.09004 * 109.47510 * 59.99904 * 12 11 10 35 35 H 0.97002 * 119.99940 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 3.5710 -0.7361 1.2356 6 6 4.0547 -1.4190 -0.0467 7 1 3.7124 -2.4537 -0.0594 8 8 5.4825 -1.3881 -0.0950 9 6 3.4864 -0.6778 -1.2591 10 7 2.0192 -0.6918 -1.1993 11 6 1.4373 -0.1106 -2.4165 12 6 1.7564 -1.0086 -3.6134 13 6 1.1588 -0.4127 -4.8620 14 1 0.6071 0.5141 -4.8074 15 6 1.3166 -1.0508 -6.0740 16 7 1.9889 -2.1790 -6.1407 17 14 0.5765 -0.3116 -7.6218 18 1 1.5624 0.6004 -8.2551 19 1 0.2269 -1.3988 -8.5711 20 1 -0.6481 0.4508 -7.2696 21 1 -0.3633 -1.0187 -0.1346 22 1 -0.3633 0.3928 0.9497 23 1 -0.3633 0.6260 -0.8149 24 1 1.6659 -1.7447 1.2577 25 1 1.6895 -0.1987 2.1403 26 1 3.9380 -1.2864 2.1020 27 1 3.9466 0.2866 1.2678 28 1 5.9109 -1.8402 0.6447 29 1 3.8174 -1.1700 -2.1736 30 1 3.8403 0.3531 -1.2533 31 1 0.3564 -0.0308 -2.3001 32 1 1.8590 0.8806 -2.5834 33 1 2.8372 -1.0885 -3.7298 34 1 1.3347 -1.9999 -3.4466 35 1 2.0995 -2.6281 -6.9933 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306510677.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:51 Heat of formation + Delta-G solvation = -64.296097 kcal Electronic energy + Delta-G solvation = -14805.491859 eV Core-core repulsion = 12416.672184 eV Total energy + Delta-G solvation = -2388.819676 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.24571 -36.38545 -33.82551 -32.29437 -31.30171 -29.13490 -26.36503 -24.84241 -23.15543 -21.21875 -20.22276 -19.39992 -17.08657 -16.41217 -15.47431 -14.76825 -14.46704 -14.41975 -13.93586 -13.54232 -13.13832 -12.70742 -12.38336 -12.11516 -11.95747 -11.58038 -11.28126 -11.14473 -10.92251 -10.70927 -10.59999 -10.48897 -10.14311 -9.76747 -9.62191 -9.25803 -9.07715 -8.29398 -7.71076 -5.96263 -3.98696 3.34249 3.40256 3.43414 4.03450 4.48382 4.75728 4.86425 4.98782 5.06898 5.34739 5.39508 5.54188 5.58708 5.74406 5.81772 5.85716 5.96186 6.04394 6.12350 6.20185 6.33023 6.34160 6.42415 6.57286 6.60263 7.01757 7.53293 7.60027 7.77957 7.84628 7.93877 8.11746 8.46777 9.08562 9.64717 11.15094 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038973 B = 0.007361 C = 0.006434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.276566 B = 3802.970505 C = 4350.652679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.076 3.924 3 H 0.033 0.967 4 C -0.107 4.107 5 C -0.151 4.151 6 C 0.106 3.894 7 H 0.064 0.936 8 O -0.568 6.568 9 C 0.063 3.937 10 N -0.530 5.530 11 C 0.061 3.939 12 C 0.027 3.973 13 C -0.522 4.522 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.066 0.934 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.374 0.626 29 H 0.093 0.907 30 H 0.031 0.969 31 H 0.070 0.930 32 H 0.019 0.981 33 H 0.017 0.983 34 H 0.024 0.976 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.354 2.341 14.774 15.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 H 0.051 0.949 4 C -0.145 4.145 5 C -0.189 4.189 6 C 0.047 3.953 7 H 0.082 0.918 8 O -0.373 6.373 9 C -0.065 4.065 10 N -0.257 5.257 11 C -0.066 4.066 12 C -0.010 4.010 13 C -0.561 4.561 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.085 0.915 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.220 0.780 29 H 0.112 0.888 30 H 0.050 0.950 31 H 0.088 0.912 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.043 0.957 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.138 2.060 14.128 14.323 hybrid contribution 0.022 0.908 -0.425 1.003 sum 1.159 2.968 13.704 14.069 Atomic orbital electron populations 1.21890 0.94445 1.02916 1.01071 1.21622 0.95500 0.95188 0.90987 0.94893 1.21561 0.94383 1.01675 0.96927 1.22316 0.96941 1.01539 0.98111 1.21818 0.79755 0.99111 0.94574 0.91829 1.86506 1.19257 1.80340 1.51148 1.21878 0.87860 0.98641 0.98081 1.61953 1.05682 1.55350 1.02706 1.22416 0.98618 0.96525 0.88993 1.19112 0.97001 0.95077 0.89820 1.21191 1.34267 1.08060 0.92571 0.92824 1.24991 0.95372 0.94926 0.99007 1.69973 1.41051 1.16658 1.25477 0.86604 0.79513 0.78772 0.83159 1.20724 1.21206 1.19910 0.91537 0.92875 0.92158 0.90983 0.91771 0.92066 0.91740 0.78021 0.88833 0.95047 0.91173 0.96303 0.96493 0.95711 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.53 37.16 0.32 -1.70 16 2 C 0.08 1.15 2.44 -67.72 -0.17 0.98 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.11 -1.34 5.37 -26.65 -0.14 -1.49 16 5 C -0.15 -1.86 5.63 -26.61 -0.15 -2.01 16 6 C 0.11 1.59 3.63 -26.65 -0.10 1.50 16 7 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 8 O -0.57 -8.17 13.32 -35.23 -0.47 -8.64 16 9 C 0.06 1.17 4.95 -3.83 -0.02 1.15 16 10 N -0.53 -9.90 4.49 -226.69 -1.02 -10.92 16 11 C 0.06 1.31 4.62 -3.82 -0.02 1.29 16 12 C 0.03 0.72 4.91 -27.88 -0.14 0.59 16 13 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -27.25 13.29 55.43 0.74 -26.52 16 17 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.05 0.60 8.13 -51.93 -0.42 0.18 16 23 H 0.06 0.88 6.56 -51.93 -0.34 0.54 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.37 3.43 9.08 45.56 0.41 3.84 16 29 H 0.09 1.99 6.23 -51.93 -0.32 1.66 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.47 5.80 -51.93 -0.30 1.17 16 32 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 33 H 0.02 0.48 6.44 -51.93 -0.33 0.14 16 34 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 276.31 15.07 4.16 4.16 Total: -1.00 -31.36 276.31 -7.51 -38.87 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -5.08 Total: -0.45 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -0.82 Total: -13.41 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.28 Total: -37.43 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.47 Total: -8.64 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.36 -7.51 -38.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306510677.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.426 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds