Wall clock time and date at job start Mon Mar 30 2020 04:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45593 * 2 1 4 4 C 1.53035 * 109.46287 * 119.97353 * 2 1 3 5 5 C 1.53119 * 109.28189 * 179.19251 * 4 2 1 6 6 C 1.53119 * 109.15841 * 302.34384 * 5 4 2 7 7 H 1.08997 * 109.50486 * 297.71331 * 6 5 4 8 8 O 1.42898 * 109.53496 * 177.60702 * 6 5 4 9 9 C 1.53043 * 109.27690 * 57.65438 * 6 5 4 10 10 N 1.46846 * 109.52062 * 300.81727 * 9 6 5 11 11 C 1.46902 * 110.99642 * 185.83761 * 10 9 6 12 12 C 1.52998 * 109.46983 * 66.28457 * 11 10 9 13 13 C 1.50703 * 109.47227 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99992 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99793 * 180.02562 * 13 12 11 16 16 N 1.31507 * 120.00285 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99519 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47043 * 89.99878 * 17 15 13 19 19 H 1.48505 * 109.46691 * 209.99888 * 17 15 13 20 20 H 1.48493 * 109.47206 * 329.99706 * 17 15 13 21 21 H 1.08993 * 109.47142 * 172.47546 * 1 2 3 22 22 H 1.09003 * 109.46619 * 292.47086 * 1 2 3 23 23 H 1.08995 * 109.47269 * 52.46934 * 1 2 3 24 24 H 1.09006 * 109.50714 * 59.25085 * 4 2 1 25 25 H 1.09004 * 109.53417 * 299.15628 * 4 2 1 26 26 H 1.09003 * 109.52709 * 182.44100 * 5 4 2 27 27 H 1.09001 * 109.57120 * 62.28290 * 5 4 2 28 28 H 0.96703 * 113.99516 * 60.18332 * 8 6 5 29 29 H 1.09002 * 109.46426 * 180.79997 * 9 6 5 30 30 H 1.08999 * 109.46534 * 60.83482 * 9 6 5 31 31 H 1.09003 * 109.46857 * 186.28138 * 11 10 9 32 32 H 1.08997 * 109.47525 * 306.28614 * 11 10 9 33 33 H 1.09004 * 109.47423 * 299.99956 * 12 11 10 34 34 H 1.09004 * 109.47510 * 59.99904 * 12 11 10 35 35 H 0.97002 * 119.99940 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 3.5710 -0.7361 1.2356 6 6 4.0547 -1.4190 -0.0467 7 1 3.7124 -2.4537 -0.0594 8 8 5.4825 -1.3881 -0.0950 9 6 3.4864 -0.6778 -1.2591 10 7 2.0192 -0.6918 -1.1993 11 6 1.4373 -0.1106 -2.4165 12 6 1.7564 -1.0086 -3.6134 13 6 1.1588 -0.4127 -4.8620 14 1 0.6071 0.5141 -4.8074 15 6 1.3166 -1.0508 -6.0740 16 7 1.9889 -2.1790 -6.1407 17 14 0.5765 -0.3116 -7.6218 18 1 1.5624 0.6004 -8.2551 19 1 0.2269 -1.3988 -8.5711 20 1 -0.6481 0.4508 -7.2696 21 1 -0.3633 -1.0187 -0.1346 22 1 -0.3633 0.3928 0.9497 23 1 -0.3633 0.6260 -0.8149 24 1 1.6659 -1.7447 1.2577 25 1 1.6895 -0.1987 2.1403 26 1 3.9380 -1.2864 2.1020 27 1 3.9466 0.2866 1.2678 28 1 5.9109 -1.8402 0.6447 29 1 3.8174 -1.1700 -2.1736 30 1 3.8403 0.3531 -1.2533 31 1 0.3564 -0.0308 -2.3001 32 1 1.8590 0.8806 -2.5834 33 1 2.8372 -1.0885 -3.7298 34 1 1.3347 -1.9999 -3.4466 35 1 2.0995 -2.6281 -6.9933 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306510677.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:51 Heat of formation + Delta-G solvation = -87.953876 kcal Electronic energy + Delta-G solvation = -14806.517738 eV Core-core repulsion = 12416.672184 eV Total energy + Delta-G solvation = -2389.845554 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.54891 -37.64496 -35.64555 -34.04788 -32.50741 -31.00492 -27.72144 -26.55735 -24.74810 -22.52277 -21.90720 -20.69837 -18.63218 -18.18085 -16.92982 -16.55530 -16.04082 -15.63527 -15.38694 -14.98019 -14.49840 -14.14892 -14.09420 -13.53746 -13.38561 -13.15046 -12.83721 -12.69183 -12.46357 -12.39374 -11.97558 -11.79095 -11.76602 -11.38166 -11.27701 -11.05124 -10.74849 -10.52921 -9.23882 -8.20775 -6.32795 1.39102 1.41201 1.52344 2.39031 2.74805 3.12274 3.57609 3.76114 3.85775 3.95063 4.15395 4.29592 4.42416 4.45431 4.54130 4.63085 4.76681 4.86265 4.87962 4.92595 5.03205 5.04661 5.10287 5.16474 5.29523 5.44445 5.47300 5.64366 5.78225 6.07588 6.30194 6.32555 6.84207 6.91270 7.36387 8.91524 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038973 B = 0.007361 C = 0.006434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.276566 B = 3802.970505 C = 4350.652679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.069 3.931 3 H 0.032 0.968 4 C -0.103 4.103 5 C -0.142 4.142 6 C 0.113 3.887 7 H 0.060 0.940 8 O -0.586 6.586 9 C 0.063 3.937 10 N -0.538 5.538 11 C 0.077 3.923 12 C 0.037 3.963 13 C -0.546 4.546 14 H 0.061 0.939 15 C 0.000 4.000 16 N -0.932 5.932 17 Si 0.968 3.032 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.261 1.261 21 H 0.057 0.943 22 H 0.086 0.914 23 H 0.047 0.953 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.398 0.602 29 H 0.050 0.950 30 H 0.023 0.977 31 H 0.079 0.921 32 H 0.013 0.987 33 H -0.013 1.013 34 H -0.007 1.007 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.611 3.270 16.336 16.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.039 4.039 3 H 0.050 0.950 4 C -0.140 4.140 5 C -0.179 4.179 6 C 0.054 3.946 7 H 0.078 0.922 8 O -0.394 6.394 9 C -0.066 4.066 10 N -0.264 5.264 11 C -0.050 4.050 12 C -0.001 4.001 13 C -0.585 4.585 14 H 0.079 0.921 15 C -0.198 4.198 16 N -0.572 5.572 17 Si 0.792 3.208 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.185 1.185 21 H 0.076 0.924 22 H 0.105 0.895 23 H 0.066 0.934 24 H 0.090 0.910 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.082 0.918 28 H 0.248 0.752 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.097 0.903 32 H 0.031 0.969 33 H 0.005 0.995 34 H 0.012 0.988 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.402 2.988 15.730 16.016 hybrid contribution 0.310 0.589 -0.882 1.105 sum 0.712 3.577 14.847 15.289 Atomic orbital electron populations 1.21878 0.93338 1.02320 1.02461 1.21856 0.96471 0.95204 0.90358 0.94969 1.21579 0.94413 1.01673 0.96367 1.22252 0.96761 1.01569 0.97359 1.21649 0.80175 0.98569 0.94257 0.92226 1.86450 1.18964 1.80948 1.53021 1.21812 0.88105 0.98224 0.98411 1.61899 1.05672 1.55911 1.02922 1.22056 0.99261 0.94885 0.88821 1.18923 0.94675 0.94497 0.91975 1.21628 1.34596 1.08524 0.93707 0.92094 1.26001 0.95625 0.95245 1.02895 1.70120 1.42257 1.18179 1.26625 0.85403 0.79021 0.78074 0.78270 1.19872 1.20558 1.18492 0.92422 0.89490 0.93440 0.91015 0.88480 0.88643 0.91818 0.75227 0.93097 0.95858 0.90261 0.96904 0.99455 0.98832 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 8.53 71.98 0.61 -3.05 16 2 C 0.07 1.98 2.44 44.94 0.11 2.09 16 3 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.10 -2.22 5.37 30.65 0.16 -2.06 16 5 C -0.14 -3.04 5.63 30.67 0.17 -2.87 16 6 C 0.11 3.29 3.63 30.65 0.11 3.40 16 7 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 8 O -0.59 -16.31 13.32 -148.98 -1.98 -18.30 16 9 C 0.06 2.41 4.95 86.33 0.43 2.84 16 10 N -0.54 -20.39 4.49 -871.10 -3.91 -24.30 16 11 C 0.08 3.43 4.62 86.30 0.40 3.83 16 12 C 0.04 2.06 4.91 29.85 0.15 2.21 16 13 C -0.55 -32.25 9.11 25.60 0.23 -32.02 16 14 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 15 C 0.00 0.02 5.46 84.66 0.46 0.48 16 16 N -0.93 -58.57 13.29 21.45 0.28 -58.29 16 17 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 21 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.09 1.65 8.13 -2.39 -0.02 1.63 16 23 H 0.05 1.32 6.56 -2.39 -0.02 1.31 16 24 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.40 6.48 9.08 -74.06 -0.67 5.81 16 29 H 0.05 2.34 6.23 -2.39 -0.01 2.33 16 30 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 3.36 5.80 -2.39 -0.01 3.35 16 32 H 0.01 0.58 8.12 -2.39 -0.02 0.56 16 33 H -0.01 -0.79 6.44 -2.38 -0.02 -0.80 16 34 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -69.97 276.31 -0.36 -70.33 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 0.38 Total: 8.43 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 2.84 Total: -25.16 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -3.63 Total: -82.59 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -1.98 Total: -18.30 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -69.97 -0.36 -70.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306510677.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.620 kcal (2) G-P(sol) polarization free energy of solvation -69.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds