Wall clock time and date at job start Mon Mar 30 2020 04:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.45206 * 2 1 4 4 C 1.53040 * 109.46028 * 240.02989 * 2 1 3 5 5 C 1.53115 * 109.27691 * 180.80278 * 4 2 1 6 6 C 1.53119 * 109.16284 * 57.65464 * 5 4 2 7 7 H 1.09002 * 109.50244 * 62.28522 * 6 5 4 8 8 O 1.42905 * 109.50540 * 182.36532 * 6 5 4 9 9 C 1.53042 * 109.27696 * 302.34314 * 6 5 4 10 10 N 1.46843 * 109.46649 * 119.97495 * 2 1 3 11 11 C 1.46900 * 111.00190 * 305.85607 * 10 2 1 12 12 C 1.52993 * 109.47269 * 189.99625 * 11 10 2 13 13 C 1.50709 * 109.47048 * 179.97438 * 12 11 10 14 14 H 1.07993 * 119.99928 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99663 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00172 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99399 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47632 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46833 * 120.00448 * 17 15 13 20 20 H 1.48501 * 109.47085 * 240.00003 * 17 15 13 21 21 H 1.09010 * 109.47100 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46980 * 299.96717 * 1 2 3 23 23 H 1.08994 * 109.47628 * 59.96941 * 1 2 3 24 24 H 1.09001 * 109.50523 * 60.86053 * 4 2 1 25 25 H 1.09001 * 109.53683 * 300.76138 * 4 2 1 26 26 H 1.09003 * 109.52471 * 297.74888 * 5 4 2 27 27 H 1.08999 * 109.52634 * 177.56021 * 5 4 2 28 28 H 0.96699 * 113.99637 * 299.92257 * 8 6 5 29 29 H 1.08996 * 109.45914 * 179.19170 * 9 6 5 30 30 H 1.08991 * 109.46254 * 299.16496 * 9 6 5 31 31 H 1.09002 * 109.47123 * 310.00204 * 11 10 2 32 32 H 1.09008 * 109.46963 * 69.99652 * 11 10 2 33 33 H 1.09001 * 109.47482 * 299.99788 * 12 11 10 34 34 H 1.09001 * 109.47179 * 60.00455 * 12 11 10 35 35 H 0.97000 * 119.99536 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5709 -0.7360 -1.2357 6 6 4.0548 -1.4187 0.0465 7 1 3.7125 -2.4535 0.0592 8 8 5.4827 -1.3879 0.0938 9 6 3.4865 -0.6776 1.2590 10 7 2.0194 -0.6917 1.1993 11 6 1.4374 -0.1106 2.4165 12 6 2.1498 -0.6805 3.6447 13 6 1.5532 -0.0839 4.8934 14 1 0.7464 0.6300 4.8185 15 6 2.0369 -0.4503 6.1315 16 7 3.0191 -1.3201 6.2228 17 14 1.2968 0.2887 7.6793 18 1 0.2131 1.2334 7.3076 19 1 0.7388 -0.7951 8.5273 20 1 2.3500 1.0148 8.4335 21 1 -0.3634 -1.0278 -0.0005 22 1 -0.3633 0.5133 0.8903 23 1 -0.3634 0.5143 -0.8896 24 1 1.6894 -0.1981 -2.1400 25 1 1.6659 -1.7447 -1.2584 26 1 3.9456 0.2872 -1.2673 27 1 3.9379 -1.2861 -2.1021 28 1 5.9106 -1.8388 -0.6470 29 1 3.8176 -1.1699 2.1734 30 1 3.8403 0.3532 1.2531 31 1 1.5588 0.9724 2.3960 32 1 0.3765 -0.3565 2.4652 33 1 2.0284 -1.7636 3.6653 34 1 3.2106 -0.4347 3.5961 35 1 3.3595 -1.5775 7.0938 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306984098.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:53 Heat of formation + Delta-G solvation = -86.741191 kcal Electronic energy + Delta-G solvation = -14845.729749 eV Core-core repulsion = 12455.936782 eV Total energy + Delta-G solvation = -2389.792968 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.58637 -37.65120 -35.69866 -34.07688 -32.50558 -30.90846 -27.74771 -26.53778 -24.93378 -22.43871 -21.90296 -20.65122 -18.67072 -18.18634 -16.88150 -16.54269 -16.00286 -15.74705 -15.50873 -14.82228 -14.50876 -14.19070 -14.10384 -13.51042 -13.38743 -13.10693 -12.86631 -12.71673 -12.44791 -12.37128 -12.08529 -11.79282 -11.74894 -11.38871 -11.19494 -11.10197 -10.72736 -10.54930 -9.24667 -8.22054 -6.34110 1.38712 1.39513 1.52956 2.38459 2.74922 3.11063 3.58642 3.76468 3.86611 3.95592 4.16203 4.31395 4.42746 4.46162 4.53620 4.64710 4.75913 4.85651 4.87615 4.94921 5.00317 5.02979 5.09029 5.17924 5.30560 5.42726 5.45696 5.62209 5.76365 6.03919 6.28577 6.31225 6.82587 6.92606 7.35192 8.90297 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038123 B = 0.007589 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.289112 B = 3688.485320 C = 4310.442780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.068 3.932 3 H 0.028 0.972 4 C -0.102 4.102 5 C -0.143 4.143 6 C 0.112 3.888 7 H 0.063 0.937 8 O -0.587 6.587 9 C 0.060 3.940 10 N -0.535 5.535 11 C 0.081 3.919 12 C 0.029 3.971 13 C -0.545 4.545 14 H 0.061 0.939 15 C 0.000 4.000 16 N -0.932 5.932 17 Si 0.969 3.031 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.278 1.278 21 H 0.062 0.938 22 H 0.045 0.955 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.397 0.603 29 H 0.056 0.944 30 H 0.016 0.984 31 H 0.015 0.985 32 H 0.074 0.926 33 H -0.007 1.007 34 H -0.006 1.006 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.613 1.203 -16.407 16.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.040 4.040 3 H 0.046 0.954 4 C -0.139 4.139 5 C -0.180 4.180 6 C 0.053 3.947 7 H 0.081 0.919 8 O -0.395 6.395 9 C -0.068 4.068 10 N -0.261 5.261 11 C -0.046 4.046 12 C -0.008 4.008 13 C -0.584 4.584 14 H 0.079 0.921 15 C -0.198 4.198 16 N -0.572 5.572 17 Si 0.793 3.207 18 H -0.184 1.184 19 H -0.201 1.201 20 H -0.204 1.204 21 H 0.081 0.919 22 H 0.064 0.936 23 H 0.103 0.897 24 H 0.115 0.885 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.247 0.753 29 H 0.075 0.925 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.092 0.908 33 H 0.012 0.988 34 H 0.012 0.988 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.775 0.963 -15.796 15.924 hybrid contribution 0.403 0.727 0.879 1.210 sum -1.373 1.690 -14.916 15.074 Atomic orbital electron populations 1.21850 0.93071 1.02694 1.02260 1.21893 0.96667 0.95032 0.90402 0.95362 1.21572 0.94290 1.01758 0.96312 1.22264 0.96904 1.01455 0.97422 1.21678 0.80141 0.98654 0.94207 0.91914 1.86468 1.19094 1.81047 1.52878 1.21858 0.88287 0.98032 0.98613 1.61953 1.05585 1.55679 1.02907 1.21990 0.99025 0.94999 0.88578 1.19080 0.94550 0.95032 0.92185 1.21650 1.18969 1.25525 0.92245 0.92062 1.26008 0.95364 0.95423 1.03011 1.70127 1.27764 1.33934 1.25341 0.85341 0.78494 0.78420 0.78427 1.18450 1.20140 1.20390 0.91874 0.93635 0.89743 0.88542 0.90695 0.92116 0.88545 0.75264 0.92549 0.96523 0.96640 0.90781 0.98844 0.98798 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 8.78 71.98 0.63 -2.92 16 2 C 0.07 1.97 2.40 44.94 0.11 2.07 16 3 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.10 -2.21 5.37 30.65 0.16 -2.04 16 5 C -0.14 -3.15 5.63 30.67 0.17 -2.98 16 6 C 0.11 3.36 3.63 30.65 0.11 3.47 16 7 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 8 O -0.59 -17.08 13.33 -148.98 -1.99 -19.07 16 9 C 0.06 2.40 4.50 86.33 0.39 2.79 16 10 N -0.53 -20.32 4.64 -871.13 -4.04 -24.36 16 11 C 0.08 3.62 4.30 86.30 0.37 3.99 16 12 C 0.03 1.61 4.22 29.85 0.13 1.73 16 13 C -0.55 -32.19 9.11 25.60 0.23 -31.95 16 14 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 15 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 16 N -0.93 -58.49 13.29 21.45 0.28 -58.20 16 17 Si 0.97 45.30 29.54 68.60 2.03 47.32 16 18 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 22 H 0.04 1.27 6.55 -2.39 -0.02 1.26 16 23 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.40 6.84 9.08 -74.06 -0.67 6.17 16 29 H 0.06 2.70 5.81 -2.39 -0.01 2.69 16 30 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.02 0.69 8.08 -2.39 -0.02 0.67 16 32 H 0.07 3.18 6.84 -2.38 -0.02 3.17 16 33 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 34 H -0.01 -0.38 6.21 -2.39 -0.01 -0.39 16 35 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -69.95 275.57 -0.57 -70.52 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.38 Total: 9.17 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 2.77 Total: -25.38 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -3.76 Total: -82.56 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -1.99 Total: -19.07 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -69.95 -0.57 -70.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306984098.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.224 kcal (2) G-P(sol) polarization free energy of solvation -69.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds