Wall clock time and date at job start Mon Mar 30 2020 04:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46363 * 2 1 4 4 C 1.53041 * 109.45128 * 119.97018 * 2 1 3 5 5 C 1.53120 * 109.27786 * 179.19273 * 4 2 1 6 6 C 1.53122 * 109.16068 * 302.34611 * 5 4 2 7 7 H 1.08998 * 109.49923 * 177.63583 * 6 5 4 8 8 O 1.42896 * 109.50019 * 297.71535 * 6 5 4 9 9 C 1.53035 * 109.27584 * 57.65636 * 6 5 4 10 10 N 1.46843 * 109.52382 * 300.81753 * 9 6 5 11 11 C 1.46902 * 111.00376 * 185.84140 * 10 9 6 12 12 C 1.53006 * 109.46626 * 45.79131 * 11 10 9 13 13 C 1.50699 * 109.46866 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47574 * 89.99780 * 17 15 13 19 19 H 1.48500 * 109.47346 * 209.99892 * 17 15 13 20 20 H 1.48499 * 109.47067 * 329.99541 * 17 15 13 21 21 H 1.08996 * 109.46956 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47317 * 299.98429 * 1 2 3 23 23 H 1.09007 * 109.46656 * 59.98267 * 1 2 3 24 24 H 1.09004 * 109.50365 * 299.13016 * 4 2 1 25 25 H 1.09002 * 109.50422 * 59.25247 * 4 2 1 26 26 H 1.09002 * 109.52153 * 62.25293 * 5 4 2 27 27 H 1.09003 * 109.52439 * 182.37651 * 5 4 2 28 28 H 0.96701 * 113.99968 * 299.99297 * 8 6 5 29 29 H 1.09004 * 109.46045 * 180.80575 * 9 6 5 30 30 H 1.08992 * 109.46721 * 60.83873 * 9 6 5 31 31 H 1.09000 * 109.47263 * 285.79438 * 11 10 9 32 32 H 1.09001 * 109.47582 * 165.78717 * 11 10 9 33 33 H 1.08993 * 109.46955 * 300.00347 * 12 11 10 34 34 H 1.09000 * 109.47050 * 60.00176 * 12 11 10 35 35 H 0.96992 * 120.00032 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2501 5 6 3.5707 -0.7362 1.2360 6 6 4.0546 -1.4191 -0.0463 7 1 5.1437 -1.3958 -0.0821 8 8 3.6056 -2.7756 -0.0629 9 6 3.4866 -0.6780 -1.2587 10 7 2.0194 -0.6918 -1.1992 11 6 1.4376 -0.1106 -2.4165 12 6 2.1502 -0.6807 -3.6446 13 6 1.5538 -0.0840 -4.8934 14 1 0.7469 0.6300 -4.8185 15 6 2.0374 -0.4504 -6.1314 16 7 3.0196 -1.3203 -6.2226 17 14 1.2987 0.2897 -7.6792 18 1 2.0340 1.5299 -8.0347 19 1 1.4053 -0.6857 -8.7939 20 1 -0.1307 0.6131 -7.4397 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5136 0.8901 23 1 -0.3633 0.5141 -0.8899 24 1 1.6892 -0.1980 2.1400 25 1 1.6655 -1.7447 1.2578 26 1 3.9455 0.2868 1.2676 27 1 3.9375 -1.2855 2.1031 28 1 3.9258 -3.3050 0.6803 29 1 3.8176 -1.1703 -2.1731 30 1 3.8406 0.3529 -1.2529 31 1 1.5592 0.9724 -2.3960 32 1 0.3768 -0.3564 -2.4653 33 1 3.2109 -0.4351 -3.5958 34 1 2.0286 -1.7637 -3.6651 35 1 3.3601 -1.5778 -7.0935 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306984100.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:56 Heat of formation + Delta-G solvation = -59.586560 kcal Electronic energy + Delta-G solvation = -14975.267393 eV Core-core repulsion = 12586.651938 eV Total energy + Delta-G solvation = -2388.615455 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.25087 -36.03095 -33.74965 -32.20822 -31.25520 -28.98589 -26.50902 -24.87191 -23.25858 -21.10171 -20.14000 -19.15496 -16.61069 -16.49180 -15.42291 -14.88993 -14.53263 -14.37713 -13.74554 -13.33503 -12.99974 -12.60869 -12.30020 -12.07416 -11.82674 -11.42819 -11.28289 -11.10875 -10.94579 -10.75908 -10.55923 -10.47436 -9.88442 -9.77082 -9.55374 -9.19757 -8.98760 -8.29369 -7.51708 -5.95659 -3.97912 3.34352 3.40505 3.44136 4.37632 4.51019 4.66874 4.93677 5.00279 5.15941 5.39788 5.42614 5.55816 5.66089 5.77209 5.89166 5.91541 5.98881 6.08004 6.18054 6.23792 6.42244 6.43751 6.45106 6.64661 6.67460 7.02974 7.62616 7.70008 7.88114 7.92971 8.04141 8.13452 8.48669 9.09078 9.65383 11.15668 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.043650 B = 0.007545 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.312758 B = 3709.964145 C = 4158.014417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.079 3.921 3 H 0.029 0.971 4 C -0.105 4.105 5 C -0.154 4.154 6 C 0.108 3.892 7 H 0.051 0.949 8 O -0.542 6.542 9 C 0.057 3.943 10 N -0.522 5.522 11 C 0.062 3.938 12 C 0.021 3.979 13 C -0.521 4.521 14 H 0.054 0.946 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.062 0.938 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.362 0.638 29 H 0.101 0.899 30 H 0.037 0.963 31 H 0.016 0.984 32 H 0.065 0.935 33 H 0.018 0.982 34 H 0.026 0.974 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.719 1.372 14.788 14.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.030 4.030 3 H 0.047 0.953 4 C -0.142 4.142 5 C -0.192 4.192 6 C 0.049 3.951 7 H 0.069 0.931 8 O -0.345 6.345 9 C -0.071 4.071 10 N -0.247 5.247 11 C -0.064 4.064 12 C -0.016 4.016 13 C -0.560 4.560 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.081 0.919 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.207 0.793 29 H 0.119 0.881 30 H 0.055 0.945 31 H 0.034 0.966 32 H 0.083 0.917 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.365 1.006 14.131 14.172 hybrid contribution 0.262 1.154 -0.417 1.254 sum 0.627 2.160 13.715 13.898 Atomic orbital electron populations 1.21852 0.94741 1.02423 1.01183 1.21599 0.95352 0.94701 0.91317 0.95328 1.21517 0.94507 1.01817 0.96402 1.22318 0.97470 1.01126 0.98243 1.21879 0.95863 0.82705 0.94660 0.93097 1.86764 1.76266 1.21171 1.50307 1.22182 0.88899 0.97464 0.98516 1.61975 1.06015 1.54736 1.02020 1.22343 0.99423 0.95297 0.89371 1.19242 0.95290 0.97147 0.89919 1.21202 1.18552 1.25060 0.91152 0.92812 1.24996 0.95129 0.95144 0.99076 1.69975 1.26452 1.32566 1.24244 0.86598 0.79593 0.78852 0.82971 1.20768 1.21204 1.19896 0.91863 0.93117 0.92199 0.92487 0.90622 0.91750 0.92117 0.79333 0.88122 0.94484 0.96591 0.91686 0.96372 0.95532 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.78 37.16 0.33 -1.79 16 2 C 0.08 1.26 2.40 -67.72 -0.16 1.10 16 3 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.10 -1.39 5.22 -26.65 -0.14 -1.53 16 5 C -0.15 -1.88 5.70 -26.61 -0.15 -2.04 16 6 C 0.11 1.60 3.81 -26.65 -0.10 1.50 16 7 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 8 O -0.54 -8.50 12.65 -35.23 -0.45 -8.94 16 9 C 0.06 1.07 4.54 -3.84 -0.02 1.05 16 10 N -0.52 -10.17 4.52 -226.69 -1.03 -11.19 16 11 C 0.06 1.38 4.30 -3.82 -0.02 1.37 16 12 C 0.02 0.57 4.22 -27.88 -0.12 0.45 16 13 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 14 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 17 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.93 6.55 -51.93 -0.34 0.59 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.08 1.09 7.80 -51.93 -0.40 0.68 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.36 3.79 9.08 45.56 0.41 4.21 16 29 H 0.10 2.19 5.81 -51.93 -0.30 1.88 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.02 0.35 8.08 -51.93 -0.42 -0.07 16 32 H 0.06 1.44 6.84 -51.93 -0.36 1.09 16 33 H 0.02 0.51 6.21 -51.93 -0.32 0.18 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 274.56 15.07 4.14 4.14 Total: -1.00 -31.91 274.56 -7.49 -39.40 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.08 Total: -0.08 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -0.79 Total: -13.73 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: -0.29 Total: -37.80 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.45 Total: -8.94 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.91 -7.49 -39.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306984100.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.189 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds