Wall clock time and date at job start Mon Mar 30 2020 04:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46363 * 2 1 4 4 C 1.53041 * 109.45128 * 119.97018 * 2 1 3 5 5 C 1.53120 * 109.27786 * 179.19273 * 4 2 1 6 6 C 1.53122 * 109.16068 * 302.34611 * 5 4 2 7 7 H 1.08998 * 109.49923 * 177.63583 * 6 5 4 8 8 O 1.42896 * 109.50019 * 297.71535 * 6 5 4 9 9 C 1.53035 * 109.27584 * 57.65636 * 6 5 4 10 10 N 1.46843 * 109.52382 * 300.81753 * 9 6 5 11 11 C 1.46902 * 111.00376 * 185.84140 * 10 9 6 12 12 C 1.53006 * 109.46626 * 45.79131 * 11 10 9 13 13 C 1.50699 * 109.46866 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47574 * 89.99780 * 17 15 13 19 19 H 1.48500 * 109.47346 * 209.99892 * 17 15 13 20 20 H 1.48499 * 109.47067 * 329.99541 * 17 15 13 21 21 H 1.08996 * 109.46956 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47317 * 299.98429 * 1 2 3 23 23 H 1.09007 * 109.46656 * 59.98267 * 1 2 3 24 24 H 1.09004 * 109.50365 * 299.13016 * 4 2 1 25 25 H 1.09002 * 109.50422 * 59.25247 * 4 2 1 26 26 H 1.09002 * 109.52153 * 62.25293 * 5 4 2 27 27 H 1.09003 * 109.52439 * 182.37651 * 5 4 2 28 28 H 0.96701 * 113.99968 * 299.99297 * 8 6 5 29 29 H 1.09004 * 109.46045 * 180.80575 * 9 6 5 30 30 H 1.08992 * 109.46721 * 60.83873 * 9 6 5 31 31 H 1.09000 * 109.47263 * 285.79438 * 11 10 9 32 32 H 1.09001 * 109.47582 * 165.78717 * 11 10 9 33 33 H 1.08993 * 109.46955 * 300.00347 * 12 11 10 34 34 H 1.09000 * 109.47050 * 60.00176 * 12 11 10 35 35 H 0.96992 * 120.00032 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2501 5 6 3.5707 -0.7362 1.2360 6 6 4.0546 -1.4191 -0.0463 7 1 5.1437 -1.3958 -0.0821 8 8 3.6056 -2.7756 -0.0629 9 6 3.4866 -0.6780 -1.2587 10 7 2.0194 -0.6918 -1.1992 11 6 1.4376 -0.1106 -2.4165 12 6 2.1502 -0.6807 -3.6446 13 6 1.5538 -0.0840 -4.8934 14 1 0.7469 0.6300 -4.8185 15 6 2.0374 -0.4504 -6.1314 16 7 3.0196 -1.3203 -6.2226 17 14 1.2987 0.2897 -7.6792 18 1 2.0340 1.5299 -8.0347 19 1 1.4053 -0.6857 -8.7939 20 1 -0.1307 0.6131 -7.4397 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5136 0.8901 23 1 -0.3633 0.5141 -0.8899 24 1 1.6892 -0.1980 2.1400 25 1 1.6655 -1.7447 1.2578 26 1 3.9455 0.2868 1.2676 27 1 3.9375 -1.2855 2.1031 28 1 3.9258 -3.3050 0.6803 29 1 3.8176 -1.1703 -2.1731 30 1 3.8406 0.3529 -1.2529 31 1 1.5592 0.9724 -2.3960 32 1 0.3768 -0.3564 -2.4653 33 1 3.2109 -0.4351 -3.5958 34 1 2.0286 -1.7637 -3.6651 35 1 3.3601 -1.5778 -7.0935 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306984100.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:55 Heat of formation + Delta-G solvation = -83.796542 kcal Electronic energy + Delta-G solvation = -14976.317217 eV Core-core repulsion = 12586.651938 eV Total energy + Delta-G solvation = -2389.665278 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.57232 -37.37544 -35.58024 -33.98048 -32.48054 -30.86437 -27.85196 -26.60937 -24.93326 -22.38802 -21.81154 -20.53107 -18.63107 -17.75588 -16.90534 -16.59024 -16.19238 -15.72150 -15.16594 -14.83745 -14.51112 -14.16800 -13.88878 -13.69419 -13.08913 -12.93999 -12.84318 -12.68084 -12.48180 -12.37376 -12.14557 -11.96491 -11.54730 -11.34641 -11.23382 -10.93830 -10.61751 -10.50534 -9.06235 -8.21272 -6.33526 1.38322 1.40642 1.51921 2.39123 3.03812 3.11357 3.46628 3.86288 3.88266 4.06461 4.20199 4.38159 4.45343 4.46894 4.56960 4.66905 4.79968 4.83792 4.90997 4.96317 4.99864 5.06268 5.08329 5.26848 5.32603 5.43599 5.49841 5.65066 5.78095 6.09982 6.34895 6.44355 6.83197 7.10595 7.35601 8.90836 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.043650 B = 0.007545 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.312758 B = 3709.964145 C = 4158.014417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.072 3.928 3 H 0.031 0.969 4 C -0.100 4.100 5 C -0.145 4.145 6 C 0.111 3.889 7 H 0.069 0.931 8 O -0.570 6.570 9 C 0.054 3.946 10 N -0.534 5.534 11 C 0.079 3.921 12 C 0.033 3.967 13 C -0.547 4.547 14 H 0.060 0.940 15 C 0.001 3.999 16 N -0.931 5.931 17 Si 0.969 3.031 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.263 1.263 21 H 0.054 0.946 22 H 0.082 0.918 23 H 0.043 0.957 24 H 0.087 0.913 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.385 0.615 29 H 0.055 0.945 30 H 0.040 0.960 31 H 0.016 0.984 32 H 0.063 0.937 33 H -0.002 1.002 34 H -0.014 1.014 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.236 2.374 16.279 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.036 4.036 3 H 0.049 0.951 4 C -0.137 4.137 5 C -0.183 4.183 6 C 0.052 3.948 7 H 0.087 0.913 8 O -0.377 6.377 9 C -0.075 4.075 10 N -0.260 5.260 11 C -0.048 4.048 12 C -0.004 4.004 13 C -0.585 4.585 14 H 0.078 0.922 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.793 3.207 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.187 1.187 21 H 0.073 0.927 22 H 0.101 0.899 23 H 0.063 0.937 24 H 0.106 0.894 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.112 0.888 28 H 0.233 0.767 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.016 0.984 34 H 0.005 0.995 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.114 2.004 15.659 15.787 hybrid contribution 0.443 0.796 -0.849 1.246 sum 0.329 2.800 14.809 15.075 Atomic orbital electron populations 1.21842 0.93859 1.02153 1.02035 1.21827 0.96202 0.94841 0.90751 0.95127 1.21510 0.95282 1.01140 0.95806 1.22273 0.96617 1.01811 0.97607 1.21839 0.96576 0.82335 0.94094 0.91305 1.86699 1.76892 1.21934 1.52165 1.22152 0.88657 0.97830 0.98828 1.61956 1.06525 1.55336 1.02146 1.21978 0.98726 0.94888 0.89204 1.19030 0.94651 0.94638 0.92087 1.21632 1.19012 1.25537 0.92353 0.92213 1.26004 0.95391 0.95387 1.02962 1.70123 1.27794 1.33828 1.25391 0.85391 0.79131 0.78169 0.78005 1.19576 1.20590 1.18711 0.92660 0.89878 0.93744 0.89411 0.91665 0.90769 0.88818 0.76658 0.92690 0.94229 0.96581 0.91890 0.98402 0.99528 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 8.78 71.98 0.63 -3.28 16 2 C 0.07 2.18 2.40 44.94 0.11 2.28 16 3 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.10 -2.35 5.22 30.65 0.16 -2.19 16 5 C -0.15 -3.07 5.70 30.68 0.17 -2.89 16 6 C 0.11 3.14 3.81 30.65 0.12 3.25 16 7 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 8 O -0.57 -17.41 12.65 -148.98 -1.88 -19.30 16 9 C 0.05 2.05 4.54 86.33 0.39 2.44 16 10 N -0.53 -21.11 4.52 -871.11 -3.94 -25.05 16 11 C 0.08 3.65 4.30 86.31 0.37 4.02 16 12 C 0.03 1.88 4.22 29.85 0.13 2.01 16 13 C -0.55 -32.64 9.11 25.60 0.23 -32.41 16 14 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 15 C 0.00 0.03 5.46 84.65 0.46 0.49 16 16 N -0.93 -58.69 13.29 21.45 0.28 -58.41 16 17 Si 0.97 45.50 29.54 68.60 2.03 47.53 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 21 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.04 1.34 6.55 -2.38 -0.02 1.33 16 24 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.06 1.70 7.80 -2.39 -0.02 1.68 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.39 7.35 9.08 -74.06 -0.67 6.67 16 29 H 0.05 2.56 5.81 -2.38 -0.01 2.55 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.02 0.73 8.08 -2.39 -0.02 0.71 16 32 H 0.06 2.88 6.84 -2.39 -0.02 2.86 16 33 H 0.00 -0.13 6.21 -2.39 -0.01 -0.15 16 34 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 35 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -71.17 274.56 -0.36 -71.52 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.38 Total: 9.98 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 2.78 Total: -26.27 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -3.66 Total: -83.46 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -1.88 Total: -19.30 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -71.17 -0.36 -71.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306984100.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.272 kcal (2) G-P(sol) polarization free energy of solvation -71.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds